scholarly journals The Cytogenetics of the Water Buffalo: A Review

Animals ◽  
2021 ◽  
Vol 11 (11) ◽  
pp. 3109
Author(s):  
Alessandra Iannuzzi ◽  
Pietro Parma ◽  
Leopoldo Iannuzzi

The water buffalo (Bubalus bubalis), also known as the Asian buffalo, is an essential domestic bovid. Indeed, although its world population (~209 million heads) is approximately one-ninth that of cattle, the management of this species involves a larger human population than that involved with raising cattle. Compared with cattle, water buffalo have been understudied for many years, but interest in this species has been increasing, especially considering that the world population of these bovids grows every year—particularly that of the river buffalo. There are two genera of buffalo worldwide: the Syncerus (from the African continent), and the Bubalus (from the southwest Asian continent, Mediterranean area, southern America, and Australia). All species belonging to these two genera have specific chromosome numbers and shapes. Because of such features, the study of chromosomes is a fascinating biological basis for differentiating various species (and hybrids) of buffaloes and characterizing their karyotypes in evolutionary, clinical, and molecular studies. In this review, we report an update on essential cytogenetic studies in which various buffalo species were described from evolutionary, clinical, and molecular perspectives—particularly considering the river buffalo (Bubalus bubalis 2n = 50). In addition, we show new data on swamp buffalo chromosomes.

2021 ◽  
Vol 53 (1) ◽  
Author(s):  
Nicolo P. P. Macciotta ◽  
Licia Colli ◽  
Alberto Cesarani ◽  
Paolo Ajmone-Marsan ◽  
Wai Y. Low ◽  
...  

Abstract Background Water buffalo is one of the most important livestock species in the world. Two types of water buffalo exist: river buffalo (Bubalus bubalis bubalis) and swamp buffalo (Bubalus bubalis carabanensis). The buffalo genome has been recently sequenced, and thus a new 90 K single nucleotide polymorphism (SNP) bead chip has been developed. In this study, we investigated the genomic population structure and the level of inbreeding of 185 river and 153 swamp buffaloes using runs of homozygosity (ROH). Analyses were carried out jointly and separately for the two buffalo types. Results The SNP bead chip detected in swamp about one-third of the SNPs identified in the river type. In total, 18,116 ROH were detected in the combined data set (17,784 SNPs), and 16,251 of these were unique. ROH were present in both buffalo types mostly detected (~ 59%) in swamp buffalo. The number of ROH per animal was larger and genomic inbreeding was higher in swamp than river buffalo. In the separated datasets (46,891 and 17,690 SNPs for river and swamp type, respectively), 19,760 and 10,581 ROH were found in river and swamp, respectively. The genes that map to the ROH islands are associated with the adaptation to the environment, fitness traits and reproduction. Conclusions Analysis of ROH features in the genome of the two water buffalo types allowed their genomic characterization and highlighted differences between buffalo types and between breeds. A large ROH island on chromosome 2 was shared between river and swamp buffaloes and contained genes that are involved in environmental adaptation and reproduction.


2020 ◽  
Vol 7 ◽  
Author(s):  
Antonio Humberto Hamad Minervino ◽  
Marco Zava ◽  
Domenico Vecchio ◽  
Antonio Borghese

The domestic buffalo (Bubalus bubalis), also known as water buffalo or Asian buffalo to prevent confusion with the American bison (Bison bison), wrongly named buffalo in North America, comprises two subspecies: the river buffalo (B. bubalis bubalis) and the swamp buffalo (B. bubalis kerebau). The swamp buffalo has a consistent phenotype and is considered as one type, even if many breeds are recognized within it; conversely, the river buffalo subspecies has many breeds. We found limited information available regarding the worldwide distribution of buffaloes. The best estimate is that 208,098,759 buffalo head are distributed in 77 countries in five continents. In this review, we presented the basic aspects of the water buffalo and unraveled the buffalo path followed from the origin of the species to its current global distribution. We reviewed several data sources to provide a better estimate of the world buffalo count and distribution.


1976 ◽  
Vol 18 (1) ◽  
pp. 101-104 ◽  
Author(s):  
G. L. Toll ◽  
C. R. E. Halnan

The karyotype of the Asian Swamp buffalo has previously been reported for beasts of Thailand and Malaysia. A diploid number of 48 was observed which was different to that found for the River buffalo (2n = 50). This report describes the karyotype of Australian Swamp buffalo, which has proved in agreement with that of the Asian Swamp buffalo. An hypothesis is advanced to account for movement of buffalo down the island chain from Malaya to Australia.


GigaScience ◽  
2020 ◽  
Vol 9 (2) ◽  
Author(s):  
Ting Sun ◽  
Jiafei Shen ◽  
Alessandro Achilli ◽  
Ningbo Chen ◽  
Qiuming Chen ◽  
...  

Abstract Background The domestic buffalo (Bubalus bubalis) is an essential farm animal in tropical and subtropical regions, whose genomic diversity is yet to be fully discovered. Results In this study, we describe the demographic events and selective pressures of buffalo by analyzing 121 whole genomes (98 newly reported) from 25 swamp and river buffalo breeds. Both uniparental and biparental markers were investigated to provide the final scenario. The ancestors of swamp and river buffalo diverged ∼0.23 million years ago and then experienced independent demographic histories. They were domesticated in different regions, the swamp buffalo at the border between southwest China and southeast Asia, while the river buffalo in south Asia. The domestic stocks migrated to other regions and further differentiated, as testified by (at least) 2 ancestral components identified in each subspecies. Different signals of selective pressures were also detected in these 2 types of buffalo. The swamp buffalo, historically used as a draft animal, shows selection signatures in genes associated with the nervous system, while in river dairy breeds, genes under selection are related to heat stress and immunity. Conclusions Our findings substantially expand the catalogue of genetic variants in buffalo and reveal new insights into the evolutionary history and distinct selective pressures in river and swamp buffalo.


Genome ◽  
1989 ◽  
Vol 32 (6) ◽  
pp. 999-1002 ◽  
Author(s):  
M. Harisah ◽  
T. I. Azmi ◽  
M. Hilmi ◽  
M. K. Vidyadaran ◽  
T. A. Bongso ◽  
...  

Chromosome analysis on different breed types of water buffaloes (Bubalus bubalis) was undertaken to identify their karyotypes and to determine the pattern of chromosome segregation in crossbred water buffaloes. Altogether, 75 purebred and 198 crossbred buffaloes including 118 from Malaysia and 80 from the Philippines, were analyzed in this study. The diploid chromosome number of the swamp buffalo from both countries was 48 and.that of the river buffalo was 50, while all F1 hybrids exhibited 49 chromosomes. The F2 hybrids consisted of three different karyotype categories (2n = 48, 2n = 49, and 2n = 50), whereas the backcrosses included two different karyotype categories each, with 2n = 48 and 2n = 49 in the three quarters swamp types and 2n = 49 and 2n = 50 in the three quarters river types. Chi-square tests on pooled data from Malaysia and the Philippines indicated that the distribution of different karyotype categories of F2 animals did not deviate significantly from the 1:2:1 ratio expected if only balanced gametes with 24 and 25 chromosomes were produced by the F1 hybrids. In the three quarters swamp and three quarters river types, the respective karyotypic categories were in ratios approximating 1:1. The distribution of chromosome categories among the F2 hybrids and backcrosses suggests that only genetically balanced gametes of the F1 hybrids are capable of producing viable F2 and backcross generations.Key words: buffaloes, chromosome segregation, genotype, buffalo hybrids.


2018 ◽  
Vol 51 ◽  
pp. 276-283 ◽  
Author(s):  
Yu. V. Guseev ◽  
О. V. Мelnyk ◽  
E. A. Gladyr ◽  
N. A. Zinovieva

According to the zoological classification Asian water buffaloes (Bubalus bubalis) are divided into two subspecies i.e. river buffalo and swamp buffalo. The river buffalo is bred in Ukraine. The water buffalo is a kind of farm animals, which has been used by the mankind as draft-cattle and for obtaining milk and meat for food since ancient times. Buffaloes have adapted to living in countries with hot humid climate, they are bred around the world, from tropical to temperate regions and even in highland areas. In many Asian countries they are used as financial guarantors for loans and as a financial asset that can be sold if necessary. The breeding of water buffaloes of Asian origin in livestock production does not compete with mankind in the food chain, because these farm animals are undemanding to fodder; they efficiently convert poor quality fodder, such as reed, sedge, shrub vegetation, straw of rice, of rye, of triticale, and of flax etc., and waste products of food and sugar industries caused by processing in foods with high biological value and production of biofertilizers for improving soil fertility and structure. Buffaloes are resistant to pyroplasmosis, anaplasmosis, tuberculosis, brucellosis, hoofed rot, diseases of the reproductive system and other diseases distributed within the species Bos Taurus taurus. Nowadays there are more than 182 million head of the buffalo in the world. Most of their population is concentrated in Asia and is 96.99% (174 mil. head) of the world number; the number in Egypt is 2.24% (3.7 mil. head), in America – 0.64% (4.3 mil. head) and in Europe – 0.15% (459 tsd. head). In Australia, the swamp buffalo is mainly bred, its number is from 70 tsd. to 200 tsd. head. Regardless of the geographical location of countries the buffalo population is intensively increasing in all the continents. During the period of 1961 – 2007 the number of buffalo increased by 54.05% or 85.84 mil. head in Asia, by 37.69% (2.48 mil. head) in Africa, by 6.14% (1.07 mil. head) in America. In Europe, the number of buffalo has declined from 0.73 to 0.25 mil. head or by 270.37%. Unfortunately, the trend of growth of the species Bubalus bubalis in North America and Europe is not observed, the main reason for that is still excessive enthusiasm to the breeding of Holstein cattle. The number of buffaloes in these two continents is less than 1% of the global number of the buffaloes, but thanks to the Italian breeders the reduction of the buffalo population in Europe could be stopped. Developed European countries, the USA, Canada, Israel etc. are gradually increasing buffalo herd and forming a new branch of cattle husbandry i.e. buffalo-breeding. In Ukraine, the number of buffaloes is not significant, but on the total amount of derived milk it is not inferior to the "supermilk" Holstein breed. Milk and meat derived from buffalo may be the basic foundation of organic products for the Ukrainian population. Therefore, the study of genetic diversity of buffaloes is particularly important. One way to study it is to use molecular genetic markers, including sequences of DNA polymorphism of which is caused by differences in the nucleotide sequences of different alleles at one locus. One of these types of genetic markers is microsatellite loci of the DNA. In recent years genetic characteristics of buffaloes with using microsatellites has acquired special distribution. This is confirmed by numerous studies of foreign authors. Despite a number of existing microsatellite loci used for research, genetic analysis with using buffalo microsatellite loci for cattle is very efficient. This paper presents the results of studies of genetic diversity of domestic buffalo population (Bubalus bubalis), the number of which decreased significantly in the recent decades in Ukraine. The material for these studies was 64 buffalo head, which are bred in «Golosеevo» farm, Kyiv region, and private households of residents of the Transcarpathian region. Genomic DNA was isolated from cartilage tissues from ears. Genetic analysis was performed using 11 microsatellite loci (BM1818, BM2113, BM1824, INRA023, ILST006, ETH10, ETH185, ETH225, SPS115, TGLA126, TGLA227), which are recommended by ISAG for genotyping of cattle. The results of studies showed that the average number of alleles per locus was 6.55. The value of observed heterozygosity ranged from 0.260 to 0.980, expected one ranged from 0.291 (BM2113) to 0.753 (TGLA227). All microsatellite loci except BM1818, ETH185 and BM2113 showed high level of polymorphism. The most polymorphic locus was TGLA227. Despite the limited number of buffaloes, in the studied population an excess of heterozygous genotypes at the level of 5.5% was established. It indicates the existence of high genetic variability of population. For TGLA126 was determined the largest excess of heterozygous genotypes – 34.2%, while for BM1818 was fixed maximum deficit of heterozygotes – 27.3%. Despite the use of microsatellite loci, which are recommended for cattle genotyping, the efficiency of their use for genetic analysis of buffaloes was very high (more than 99.99%). It indicates the ability and efficiency of use of selected microsatellite loci for allele pool evaluation and genetic diversity characterization of Ukrainian buffalo population.


2014 ◽  
Vol 8 (1) ◽  
Author(s):  
Gian Dina Febriani ◽  
Hamdan Hamdan ◽  
Juli Melia

This research aims to know the influence of the equilibration to the quality of the swamp buffalo (Bubalus bubalis) cement after thawing including: motility, and percentage of live spermatozoa. This research used the fresh cement from a 4 years old water buffalo was collected using an artificial vagina,and evaluation cement for macroscopic and microskopic to see if cement was worthy or not worthy to frozen. Good quality cement was diluted by adding Andromed, then semen were incorporated into the straw using the machine filling sealing followed by equilibrated with 3 treatment groups. Group I (n = 3 straw) with equilibration time of 3 hours, the Group II (n = 3 straw) with a time of equilibration was 5 hours, and group III (n = 3 straw) with equilibration a time of 7 hours. After equilibrated, straw frozen and stored in liquid N2 (BIBD Tuah Sakato procedures). The results show that the length of time the real equilibration effect (P 0.05) on the motility and percentage life of swamp buffalo spermatozoa. Equilibration 5 hours of time differs markedly with equilibration time 3 and 7 hours, motility, and percentage of live spermatozoa (44.15±1.70; 46.50±1.36 vs 14,55±1,58; 1.42±37.38 vs. 15.37±1.58; and 37.50±1.25). In conclusion, equilibration time is showed on the cement of swmp buffalo after 5 hours thawing.Key words: equilibration, swamp buffalo, thawing


2021 ◽  
Vol 6 (1) ◽  
pp. 145-147
Author(s):  
Nouran Adel Youssef ◽  
Manon Curaudeau ◽  
Soheir Mohamed El Nahas ◽  
Amal Ahmed Mohamed Hassan ◽  
Alexandre Hassanin

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