scholarly journals A Molecule of the Viridomycin Family Originating from a Streptomyces griseus-Related Strain Has the Ability to Solubilize Rock Phosphate and to Inhibit Microbial Growth

Antibiotics ◽  
2021 ◽  
Vol 10 (1) ◽  
pp. 72
Author(s):  
Hanane Hamdali ◽  
Ahmed Lebrihi ◽  
Marie Carmen Monje ◽  
Ahmed Benharref ◽  
Mohamed Hafidi ◽  
...  
Keyword(s):  
Microbial Growth ◽  
Plant Pathogens ◽  
Rock Phosphate ◽  
Streptomyces Griseus ◽  
Phosphate Fertilizer ◽  
Gram Positive Bacteria ◽  
Counter Ions ◽  
Common Plant ◽  
Growth Of Fungi

Some soil-borne microorganisms are known to have the ability to solubilize insoluble rock phosphate and this process often involves the excretion of organic acids. In this issue, we describe the characterization of a novel solubilizing mechanism used by a Streptomyces strain related to Streptomyces griseus isolated from Moroccan phosphate mines. This process involves the excretion of a compound belonging to the viridomycin family that was shown to play a major role in the rock phosphate bio weathering process. We propose that the chelation of the positively charged counter ions of phosphate constitutive of rock phosphate by this molecule leads to the destabilization of the structure of rock phosphate. This would result in the solubilization of the negatively charged phosphates, making them available for plant nutrition. Furthermore, this compound was shown to inhibit growth of fungi and Gram positive bacteria, and this antibiotic activity might be due to its strong ability to chelate iron, a metallic ion indispensable for microbial growth. Considering its interesting properties, this metabolite or strains producing it could contribute to the development of sustainable agriculture acting as a novel type of slow release bio-phosphate fertilizer that has also the interesting ability to limit the growth of some common plant pathogens.

4-(Piperidin-1-yl)pyridinium hexafluorophosphate at 150 K

2003 ◽  
Vol 59 (11) ◽  
pp. o622-o624 ◽  
Author(s):  
Bruce D. James ◽  
Siti Mutrofin ◽  
Brian W. Skelton ◽  
Allan H. White
Keyword(s):  
Hydrogen Bonds ◽  
Structural Characterization ◽  
Title Compound ◽  
Ion Pairs ◽  
Piperidine Ring ◽  
Torsion Angles ◽  
Compound C ◽  
Counter Ions

Structural characterization of the title compound, C10H15N2 +·PF6 −, shows it to be ionic, with the pyridine rather than the piperidine N atom being protonated and forming hydrogen bonds to the counter-ions, resulting in two independent ion pairs. A number of unusual features are noted, in particular the remarkably close inter-ring hydrogen contacts [1.97 (3)–2.00 (3) Å] and the considerable differences in the pair of cations, in respect of the torsion angles within the piperidine ring involving the bonds to either side of the N atom.

scholarly journals SKRENING BAKTERI TOLERAN PESTISIDA DENGAN BAHAN AKTIF KLORANTRANILIPROL ASAL TANAH PERTANIAN BATURITI TABANAN BALI

2017 ◽  
Vol 21 (1) ◽  
pp. 1
Author(s):  
NI KADEK WIWIK SINTA DEWI ◽  
IDA BAGUS GEDE DARMAYASA ◽  
I KETUT SUNDRA
Keyword(s):  
Large Scale ◽  
Chemical Compounds ◽  
Mineral Medium ◽  
Gram Negative Bacteria ◽  
Soil Mineral ◽  
Gram Negative ◽  
Gram Positive Bacteria ◽  
Numerous Problem ◽  
Stage 1

In Indonesia agriculture practice often used the large scale pesticide application such as insecticide, herbicide, and fungicide. The wide use of toxic pesticide has created numerous problem in increasing environtmental hazard to human and to other animals. Many of soil bacteria had important role to degrading chemical compounds into simpler compounds as a bioremediation agent. The aim of this study was to screen the Chlorantraniliprole tolerant bacteria using soil mineral medium with Prevathon pesticide addition, also teo identificate the species of bacteria. This research was conducted at Microbiology Laboratory, Faculty of Mathematics and Natural Sciences, Udayana University. The research was done in three analysis, (1) bacteria test on Prevathon pesticide addition to mineral medium treatment, (2) characterization of bacteria, (3) Identification of pesticide tolerant bacteria with BD BBL Crystal Enteric/Non FermenterID Kit. The results showed that mineral medium with the addition of pesticides Prevathon treatment able to provide a significant different effect on the enrichment stage 1, stage 2 and stage 3 (P<0.05), there was 5 isolates pesticide tolerant bacteria that isolated from Baturiti Tabanan cultivated soil that was BSP 1, BSP 2, BSP 3 known as gram negative bacteria, and BSP 4, BSP 5 known as Gram positive bacteria, pesticide tolerant bacteria identified as Serratia marcescens which is a Gram negative bacteria group and may cause pathogenic.

scholarly journals Isolasi dan Karakterisasi Bakteri Penghasil Etanol dari Lingkungan Industri Arak Bali di Desa Merita dan Tri Eka Buana, Karangasem-Bali

2020 ◽  
Vol 8 (2) ◽  
pp. 279
Author(s):  
Azis Akbar Hakim ◽  
I M. Mahaputra Wijaya ◽  
Ida Bagus Wayan Gunam
Keyword(s):  
Fermentation Process ◽  
Visible Spectrophotometry ◽  
Gram Positive Bacteria ◽  
Production Location ◽  
Coconut Tree ◽  
Isolation And Characterization ◽  
Exposure Method ◽  
Sucrose Medium ◽  
Uv Visible

The purpose of this research is isolation and characterization to find potential bacteria which can produce the most optimal ethanol from the Arak Bali industry in Karangasem Regency, Bali. Bacteria were isolated by exposure method in open air using selective media Zymomonas Sucrose Medium (ZSMA) with the addition of nystatin as much as 0.18 g / L as an antifungal then samples were taken at three different points in one Arak Bali production location, namely the distillation place, the fermentation room for roomie, and the place of taking coconut juice under the coconut tree and the variation of time is 15, 30, and 60 minutes of exposure. Gas checking is done on the bacteria obtained to select its ability to produce ethanol. The results of the scanning of 11 best isolates using UV-visible spectrophotometry were fermented on 500 mL ZSM media for 10 days. BM1-CP14 is the best isolate to produce total ethanol of 15.33 mL through the fermentation process. The results of the characterization of BM1-CP14 isolates were Gram-positive bacteria in the form of bacilli, anaerobic and non-motile bacteria. The results showed that bacteria isolated from open-air also can produce ethanol. Keyword: ethanol, Arak Bali, airborne bacterial exposure, isolation, characterization, UV-Visible spectrophotometry

scholarly journals Purification and Characterization of Antibacterial Activity against Phytopathogenic Bacteria in Culture Fluids from Ganoderma lucidum

Molecules ◽  
2021 ◽  
Vol 26 (18) ◽  
pp. 5553
Author(s):  
Loreto Robles-Hernández ◽  
Nora A. Salas-Salazar ◽  
Ana C. Gonzalez-Franco
Keyword(s):  
Antibacterial Activity ◽  
Ganoderma Lucidum ◽  
Pathogenic Bacteria ◽  
Plant Pathogens ◽  
Heat Stability ◽  
Limited Information ◽  
Dialysis Tubing ◽  
Molecular Weights ◽  
Exclusion Chromatography

Previous studies of Ganoderma lucidum have focused on its medicinal applications. Limited information is available about its antibacterial activity against plant pathogens. Thus, the goal of this study was to purify and characterize the antibacterial activity against plant pathogenic bacteria from culture fluids of G. lucidum. The nature of the bioactive components was determined using heat boiling, organic solvents, dialysis tubing, gel exclusion chromatography (GEC), proteinase sensitivity, HPLC, HPLC-APCI-MS, and GC-MS. The bioactive compounds were neither lipid, based on their solubility, nor proteic in nature, based on proteinase digestion and heat stability. The putative-bioactive polysaccharides have molecular weights that range from 3500 to 4500 Daltons as determined by dialysis tubing, GEC and APCI-MS analysis. The composition of the antibacterial compounds was determined by GC-MS. This is the first report of small polysaccharides produced by G. lucidum with activity against bacterial plant pathogens.

scholarly journals Genomic characterization of 99 viruses from the bunyavirus families Nairoviridae, Peribunyaviridae, and Phenuiviridae, including 35 previously unsequenced viruses

2021 ◽  
Vol 17 (3) ◽  
pp. e1009315
Author(s):  
Marylee L. Kapuscinski ◽  
Nicholas A. Bergren ◽  
Brandy J. Russell ◽  
Justin S. Lee ◽  
Erin M. Borland ◽  
...  
Keyword(s):  
Plant Pathogens ◽  
Reference Sequence ◽  
Large Sample Size ◽  
Emerging Pathogens ◽  
Genome Sequences ◽  
Pathogenic Potential ◽  
Genomic Characterization ◽  
Response Decisions ◽  
Rapid Characterization

Bunyaviruses (Negarnaviricota: Bunyavirales) are a large and diverse group of viruses that include important human, veterinary, and plant pathogens. The rapid characterization of known and new emerging pathogens depends on the availability of comprehensive reference sequence databases that can be used to match unknowns, infer evolutionary and pathogenic potential, and make response decisions in an evidence-based manner. In this study, we determined the coding-complete genome sequences of 99 bunyaviruses in the Centers for Disease Control and Prevention’s Arbovirus Reference Collection, focusing on orthonairoviruses (family Nairoviridae), orthobunyaviruses (Peribunyaviridae), and phleboviruses (Phenuiviridae) that either completely or partially lacked genome sequences. These viruses had been collected over 66 years from 27 countries from vertebrates and arthropods representing 37 genera. Many of the viruses had been characterized serologically and through experimental infection of animals but were isolated in the pre-sequencing era. We took advantage of our unusually large sample size to systematically evaluate genomic characteristics of these viruses, including reassortment, and co-infection. We corroborated our findings using several independent molecular and virologic approaches, including Sanger sequencing of 197 genome segments, and plaque isolation of viruses from putative co-infected virus stocks. This study contributes to the described genetic diversity of bunyaviruses and will enhance the capacity to characterize emerging human pathogenic bunyaviruses.

scholarly journals Insights into AMS/PCAT transporters from biochemical and structural characterization of a double Glycine motif protease

eLife ◽  
2019 ◽  
Vol 8 ◽  
Author(s):  
Silvia C Bobeica ◽  
Shi-Hui Dong ◽  
Liujie Huo ◽  
Nuria Mazo ◽  
Martin I McLaughlin ◽  
...  
Keyword(s):  
Structural Data ◽  
Leader Peptide ◽  
Gram Negative Bacteria ◽  
Protease Domain ◽  
Peptide Recognition ◽  
Gram Positive Bacteria ◽  
Dual Functional ◽  
Signaling Peptides

The secretion of peptides and proteins is essential for survival and ecological adaptation of bacteria. Dual-functional ATP-binding cassette transporters export antimicrobial or quorum signaling peptides in Gram-positive bacteria. Their substrates contain a leader sequence that is excised by an N-terminal peptidase C39 domain at a double Gly motif. We characterized the protease domain (LahT150) of a transporter from a lanthipeptide biosynthetic operon in Lachnospiraceae and demonstrate that this protease can remove the leader peptide from a diverse set of peptides. The 2.0 Å resolution crystal structure of the protease domain in complex with a covalently bound leader peptide demonstrates the basis for substrate recognition across the entire class of such transporters. The structural data also provide a model for understanding the role of leader peptide recognition in the translocation cycle, and the function of degenerate, non-functional C39-like domains (CLD) in substrate recruitment in toxin exporters in Gram-negative bacteria.

scholarly journals NOVEL COMPOSITE OF SILVER-BACTERIAL CELLULOSE (Ag-BC) FROM SIWALAN SAP (Borassus flabellifer) AND ITS ANTIBACTERIAL ACTIVITY

2020 ◽  
Vol 83 (1) ◽  
pp. 19-25
Author(s):  
Suntini Suntini ◽  
Anastasia Wheni Indrianingsih ◽  
Harjono Harjono
Keyword(s):  
Antibacterial Activity ◽  
Bacterial Cellulose ◽  
Antibacterial Properties ◽  
Reduction Process ◽  
Diffusion Method ◽  
Natural Material ◽  
Gram Positive Bacteria ◽  
Antibacterial Assay ◽  
Natural Composite

Recently, a wound healing from natural composite with excellent properties is in a high demand. In this study, a novel composite of bacterial cellulose made from Siwalan sap (Borassus flabellifer) was achieved. Siwalan is a common plant in Java Island of Indonesia and the application is very limited for beverage only. This study aims to determine the effect of the AgNO3/NaBH4 concentration ratio in the development of Ag-BC composites and its antibacterial properties from Siwalan sap. Ag-BC composites were prepared by impregnating the silver solution into the BC matrix through the reduction process with NaBH4. Characterization of Ag-BC composites conducted using Fourier Transform Infrared Spectroscopy (FTIR), Scanning Electron Microscopy (SEM), and Energy Dispersive X-ray (EDX). Antibacterial assay was performed using disc diffusion method against Salmonella typhimurium (Gram-negative) and Staphylococcus aureus (Gram-positive) bacteria. The characterization of Ag-BC composite shows the nanostructure of BC with a length of fiber around 35-60 nm in width. The SEM-EDX micrograph showed that silver particles were impregnated into the BC matrix. Antibacterial activity test results showed that the Ag-BC composite had the ability to inhibit the bacteria S. typhimurium and S. aureus with good inhibition. This result showed the potential application of Ag-BC composite from Siwalan plant as a natural material for medical and pharmaceutical purpose, especially as an antibacterial agent.

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