scholarly journals Insights into AMS/PCAT transporters from biochemical and structural characterization of a double Glycine motif protease

eLife ◽  
2019 ◽  
Vol 8 ◽  
Author(s):  
Silvia C Bobeica ◽  
Shi-Hui Dong ◽  
Liujie Huo ◽  
Nuria Mazo ◽  
Martin I McLaughlin ◽  
...  
Keyword(s):  
Structural Data ◽  
Leader Peptide ◽  
Gram Negative Bacteria ◽  
Protease Domain ◽  
Peptide Recognition ◽  
Gram Positive Bacteria ◽  
Dual Functional ◽  
Signaling Peptides

The secretion of peptides and proteins is essential for survival and ecological adaptation of bacteria. Dual-functional ATP-binding cassette transporters export antimicrobial or quorum signaling peptides in Gram-positive bacteria. Their substrates contain a leader sequence that is excised by an N-terminal peptidase C39 domain at a double Gly motif. We characterized the protease domain (LahT150) of a transporter from a lanthipeptide biosynthetic operon in Lachnospiraceae and demonstrate that this protease can remove the leader peptide from a diverse set of peptides. The 2.0 Å resolution crystal structure of the protease domain in complex with a covalently bound leader peptide demonstrates the basis for substrate recognition across the entire class of such transporters. The structural data also provide a model for understanding the role of leader peptide recognition in the translocation cycle, and the function of degenerate, non-functional C39-like domains (CLD) in substrate recruitment in toxin exporters in Gram-negative bacteria.

scholarly journals SKRENING BAKTERI TOLERAN PESTISIDA DENGAN BAHAN AKTIF KLORANTRANILIPROL ASAL TANAH PERTANIAN BATURITI TABANAN BALI

2017 ◽  
Vol 21 (1) ◽  
pp. 1
Author(s):  
NI KADEK WIWIK SINTA DEWI ◽  
IDA BAGUS GEDE DARMAYASA ◽  
I KETUT SUNDRA
Keyword(s):  
Large Scale ◽  
Chemical Compounds ◽  
Mineral Medium ◽  
Gram Negative Bacteria ◽  
Soil Mineral ◽  
Gram Negative ◽  
Gram Positive Bacteria ◽  
Numerous Problem ◽  
Stage 1

In Indonesia agriculture practice often used the large scale pesticide application such as insecticide, herbicide, and fungicide. The wide use of toxic pesticide has created numerous problem in increasing environtmental hazard to human and to other animals. Many of soil bacteria had important role to degrading chemical compounds into simpler compounds as a bioremediation agent. The aim of this study was to screen the Chlorantraniliprole tolerant bacteria using soil mineral medium with Prevathon pesticide addition, also teo identificate the species of bacteria. This research was conducted at Microbiology Laboratory, Faculty of Mathematics and Natural Sciences, Udayana University. The research was done in three analysis, (1) bacteria test on Prevathon pesticide addition to mineral medium treatment, (2) characterization of bacteria, (3) Identification of pesticide tolerant bacteria with BD BBL Crystal Enteric/Non FermenterID Kit. The results showed that mineral medium with the addition of pesticides Prevathon treatment able to provide a significant different effect on the enrichment stage 1, stage 2 and stage 3 (P<0.05), there was 5 isolates pesticide tolerant bacteria that isolated from Baturiti Tabanan cultivated soil that was BSP 1, BSP 2, BSP 3 known as gram negative bacteria, and BSP 4, BSP 5 known as Gram positive bacteria, pesticide tolerant bacteria identified as Serratia marcescens which is a Gram negative bacteria group and may cause pathogenic.

scholarly journals The Recombination Genes addAB Are Not Restricted to Gram-Positive Bacteria: Genetic Analysis of the Recombination Initiation Enzymes RecF and AddAB in Rhizobium etli

2004 ◽  
Vol 186 (23) ◽  
pp. 7905-7913 ◽  
Author(s):  
Jacobo Zuñiga-Castillo ◽  
David Romero ◽  
Jaime M. Martínez-Salazar
Keyword(s):  
Recombination Frequency ◽  
Double Strand Breaks ◽  
Additive Effect ◽  
Gram Negative Bacteria ◽  
Rhizobium Etli ◽  
Gram Positive ◽  
Gram Negative ◽  
Strand Breaks ◽  
Gram Positive Bacteria

ABSTRACT Single-strand gaps (SSGs) and double-strand breaks (DSBs) are the major initiation sites for recombination. In bacteria, the SSGs are repaired by RecFOR, while the DSBs are processed by RecBCD in gram-negative bacteria and AddAB in gram-positive bacteria. Unexpectedly, instead of recBCD genes, the addAB genes were found in members of the α-proteobacteria group (gram negative). Taking Rhizobium etli as a model, the role of recF and addAB genes in homologous recombination and repair of damaged DNA was evaluated. Inactivation of either recF or addA provoked strong sensitivity to UV radiation and mitomycin C, while an additive effect was observed in the recF-addA mutant. The DSBs generated by nalidixic acid caused low viability only in the addA mutant. The recombination frequency of large and small plasmids was reduced in the recF mutant (24- and 36-fold, respectively), whereas a slight decrease (threefold) in the addA mutant was observed. Moreover, an additive effect (47- and 90-fold, respectively) was observed in the double mutant, but it was not as dramatic as that in a recA mutant. Interestingly, the frequency of deletion and Campbell-type recombination was slightly affected in either single or double mutants. These results suggest that another pathway exists that allows plasmid and Campbell-type recombination in the absence of recF and addA genes.

Synthesis, Characterization, and Antibacterial Evaluation of Curcumin-Sulfanilamide Compound

2020 ◽  
Vol 840 ◽  
pp. 265-269
Author(s):  
Nurjanah Nurjanah ◽  
Endang Saepudin
Keyword(s):  
Antibacterial Activity ◽  
Functional Group ◽  
Biological Activities ◽  
Curcuma Longa ◽  
Gram Negative Bacteria ◽  
Gram Negative ◽  
E Coli ◽  
Gram Positive Bacteria ◽  
Ftir Spectrophotometry

Curcumin, a diarylheptanoids compound which isolated primary from Curcuma longa, exhibits a variety of exciting biological activities, including as an antibacterial agent. In the present study, a sulfanilamide-contained curcumin compound was synthesized and characterized to investigate the antibacterial activity against gram-positive bacteria S. aureus, B. subtilis and gram-negative bacteria E. coli. The characterization of the synthesized compound was determined by analysing peak absorbance, functional group, and molecular weight using mass spectroscopy, UV/Vis and FTIR spectrophotometry. Curcumin-sulfanilamide compound exhibited the best antibacterial activity against gram-negative bacteria compared to curcumin and the curcumin-derived compound containing isoxazole with inhibitory zone of 11 mm.

scholarly journals Molecular Characterization of Zinc (Zn) Resistant Bacteria in Banger River, Pekalongan, Indonesia

2018 ◽  
Vol 10 (3) ◽  
pp. 622-628
Author(s):  
Fitri Arum Sasi ◽  
Hermin Pancasakti Kusumaningrum ◽  
Anto Budiharjo
Keyword(s):  
Bacterial Species ◽  
Selective Medium ◽  
Resistant Bacteria ◽  
Gram Negative Bacteria ◽  
Gram Positive ◽  
Gram Negative ◽  
Indigenous Bacteria ◽  
Gram Positive Bacteria ◽  
Sequences Analysis

Indigenous bacteria are able to remove the metals contamination in environment. This study aimed to assess the resistance of bacterial species to Zinc (Zn) in Banger River, Pekalongan City. The bacteria from three different parts of Banger River were isolated and inoculated in Zn-selective medium. Then, molecular identification to determine the bacteria species was conducted using polymerase chain reaction (PCR) by applying forward-reverse 16SrRNA gene primers. The sequences analysis was conducted using MUSCLE and MEGA6. There were seven dominant species that possibly resistant to Zn. Approximately, every isolate could reach more than 95 % from 2000 ppm of Zn in the medium. The higher absorption of Zn was found in Z5 isolate. The seven bacteria species were clustered into nine genera i.e. Klebsiela, Xenorhabdus, Cronobacter, Enterobacter, Escherichia, Shigella and Sporomusa known as Gram Negative bacteria and Clostridium and Bacillus as Gram Positive bacteria. In Gram Positive bacteria, especially Bacillus sp, carboxyl group in peptidoglycan play a role as metal binder. In Gram-negative bacteria, lipopolysaccharide (LPS) which is highly anionic component on the outer membrane, able to catch the Zn. Besides that, Enterobacter activates endogen antioxidants such as glutathione peroxidase (GSHPx), glutathione reductase (GR), catalase (CAT) and superoxide dismutase (SOD). The research found there was possible seven novel indigenous bacteria species in Banger that able to remove Zn from the sediment extremely. This finding can be developed as an eco-friendly approach to reduce metals pollution using local microorganisms.

scholarly journals Biological characterization of fungal endophytes isolated from agarwood tree Aquilaria crassna Pierre ex Lecomte

2016 ◽  
Vol 14 (1) ◽  
pp. 149-156 ◽  
Author(s):  
Hoang Kim Chi ◽  
Le Huu Cuong ◽  
Tran Thi Nhu Hang ◽  
Nguyen Dinh Luyen ◽  
Tran Thi Hong Ha ◽  
...  
Keyword(s):  
Antimicrobial Activity ◽  
Endophytic Fungi ◽  
Fusarium Verticillioides ◽  
Fungal Endophytes ◽  
Morphological Identification ◽  
Gram Positive Bacteria ◽  
Aquilaria Crassna ◽  
Fruity Odor

In recent years, a considerable number of studies on the role of microbes in agarwood production have been carried out in plants of the species Aquilaria. Based on the fact that there is a relationship between the microorganisms residing inside the plant and the agarwood formation, we isolated and characterized endophytic fungi associated with A. crassna samples collected from Southern Vietnam. Morphological identification and DNA barcoding analysis of the fungal endophytic isolates indicated that they were classified at least into three groups of diverse genera: Geotrichum, Fusarium and Colletotrichum belonging to families Dipodascaceae, Nectriaceae and Glomerellaceae, respectively.  Noteworthy, Geotrichum candium strain SHTr1 isolated from a dark colored woody sample of agarwood was able to produce a fruity odor and exhibited a slight antimicrobial activity against the test bacterium Staphylococcus aureus. Another fungal isolate, Fusarium verticillioides SHTr3’s, showed a moderate antimicrobial activity against a test Gram positive bacteria Bacillus subtillis and S. aureus with MIC values at 50 μg.mL-1. At 200 μg.mL-1, the ethyl acetate extracts of fungal isolates F. verticillioides SHTr3 and Colletotrichum truncatum SHTrHc7 were found to have comparable scavenging abilities on DPPH-free radicals with 53.87 and 71.82%, respectively. The present results contribute to a depiction of a diverse fungal endophytic community in Vietnamese agarwood plant A. crassna and provide important information for further understanding of the role of endophytic fungi in agarwood formation and therapeutic applications of host plants in general.

The role of biosynthesized silver nanoparticles in antimicrobial mechanisms

2021 ◽  
Vol 22 ◽  
Author(s):  
Bianca PizzornoBackx ◽  
Mayara Santana dos Santos ◽  
Otávio Augusto Leitão dos Santos ◽  
Sérgio Antunes Filho
Keyword(s):  
Silver Nanoparticles ◽  
Green Synthesis ◽  
Antimicrobial Properties ◽  
New Drugs ◽  
Gram Negative Bacteria ◽  
New Materials ◽  
Gram Negative ◽  
Gram Positive Bacteria ◽  
Emergence Of Resistance

: Nanotechnology is an area of science able to develop new materials. The relation between nanotechnology and microbiology is essential for the development of new drugs and vaccines. The main advantage of blend in both areas is to associate the latest technology to obtain new ways to solve problems related to microorganisms. This review seeks to investigate nanoparticle formation's antimicrobial properties, primarily when connected to the green synthesis of silver nanoparticles. The development of new sustainable methods for nanoparticle production has been instrumental in designing alternative, non-toxic, energy-friendly, and environmentally friendly routes. In this sense, it is necessary to study silver nanoparticles' green synthesis concerning their antimicrobial properties. Antimicrobial mechanisms of silver nanoparticles demonstrate efficiency to gram-positive bacteria, gram-negative bacteria, fungi, viruses, and parasites. However, attention is needed with the emergence of resistance to these antimicrobials. This article seeks to relate the parameters of green silver-based nanosystems with the efficiency of antimicrobial activity.

scholarly journals Characterization of the ςB Regulon inStaphylococcus aureus

2000 ◽  
Vol 182 (24) ◽  
pp. 6983-6991 ◽  
Author(s):  
Silke Gertz ◽  
Susanne Engelmann ◽  
Roland Schmid ◽  
Anne-Kathrin Ziebandt ◽  
Karsten Tischer ◽  
...  
Keyword(s):  
Protein Pattern ◽  
Physiological Role ◽  
Positive Control ◽  
Homologous Gene ◽  
Gram Negative Bacteria ◽  
Transport Mechanisms ◽  
Stress Genes ◽  
Gram Positive Bacteria ◽  
Cytoplasmic Proteins

ABSTRACT The ςB-dependent stress regulon in gram-positive bacteria might fulfill a physiological role in stress response and virulence similar to that of the ςS regulon inEscherichia coli and other gram-negative bacteria. In order to obtain evidence for the function of the ςB regulon ofStaphylococcus aureus, especially in virulence control, ςB-dependent stress genes were identified. The two-dimensional protein pattern of wild-type cells of S. aureus COL was compared with that of an isogenic sigBmutant. By this approach, we found that the synthesis of about 27 cytoplasmic proteins seemed to be under the positive control of ςB. N-terminal sequencing of 18 proteins allowed the identification of their genes on the almost finished genome sequence ofS. aureus COL and the analysis of the promoter structure. Transcriptional analyses of 11 of these genes confirmed their ςB dependency, and moreover, about 7 additional ςB-dependent genes were found which are cotranscribed with the newly detected genes, forming operons. Altogether, we identified 23 ςB-dependent genes and their corresponding proteins. Among them are proteins probably involved in the generation of NADH or in membrane transport mechanisms. Furthermore, at least oneclpC-homologous gene was localized on the S. aureus sequence solely transcribed by ςB. In contrast, a second clpC-homologous gene in S. aureus forming an operon with ctsR, yacH, and yacI was ςB independently expressed.

scholarly journals Analysis of the Role of RsbV, RsbW, and RsbY in Regulating σB Activity in Bacillus cereus

2005 ◽  
Vol 187 (16) ◽  
pp. 5846-5851 ◽  
Author(s):  
Willem van Schaik ◽  
Marcel H. Tempelaars ◽  
Marcel H. Zwietering ◽  
Willem M. de Vos ◽  
Tjakko Abee
Keyword(s):  
Bacillus Cereus ◽  
Sigma Factor ◽  
Functional Characterization ◽  
Regulatory Proteins ◽  
Stress Exposure ◽  
Gram Positive Bacteria ◽  
Important Regulator ◽  
Factor Antagonist

ABSTRACT The alternative sigma factor σB is an important regulator of the stress response of Bacillus cereus. Here, the role of the regulatory proteins RsbV, RsbW, and RsbY in regulating σB activity in B. cereus is analyzed. Functional characterization of RsbV and RsbW showed that they act as an anti-sigma factor antagonist and an anti-sigma factor, respectively. RsbW can also act as a kinase on RsbV. These data are in line with earlier functional characterizations of RsbV and RsbW homologs in B. subtilis. The rsbY gene is unique to B. cereus and its closest relatives and is predicted to encode a protein with an N-terminal CheY domain and a C-terminal PP2C domain. In an rsbY deletion mutant, the σB response upon stress exposure was almost completely abolished, but the response could be restored by complementation with full-length rsbY. Expression analysis showed that rsbY is transcribed from both a σA-dependent promoter and a σB-dependent promoter. The central role of RsbY in regulating the activity of σB indicates that in B. cereus, the σB activation pathway is markedly different from that in other gram-positive bacteria.

scholarly journals Preparation characterization and biological activity of some new tetra - azo compounds

2008 ◽  
pp. 35-44
Keyword(s):  
Ph Value ◽  
Chemical Properties ◽  
Azo Compounds ◽  
Gram Negative Bacteria ◽  
Gram Positive Bacteria ◽  
Phenol Derivatives ◽  
Visible Spectra ◽  
Physical And Chemical ◽  
And Chemical Properties

In this paper , preparation and characterization of some tetra azo compounds .Azo coupling of 3`,3,4`,4- tetra amino biphenyl with phenol and some phenol derivatives in alkaline solution gave azo dyes. I.R and U.V. visible spectra were recorded to identify the three azo compounds prepared . Some physical and chemical properties such as molar absorption coefficient in different pH value and maximum absorption λ maxwere investigated. The biological effect of these dye against two gram positive Bacteria (S.aureuse) and other two gram negative Bacteria (P.aeruginosa) is presented .

scholarly journals Synthesis and Characterization of Some New Pyrazoline and Isoxazoline Derivatives as Antibacterial Agents

2016 ◽  
Vol 13 (3) ◽  
pp. 568-577
Author(s):  
Baghdad Science Journal
Keyword(s):  
Sodium Hydroxide ◽  
Antibacterial Agents ◽  
Amine Hydrochloride ◽  
Gram Negative Bacteria ◽  
Gram Positive Bacteria ◽  
In Vitro Antibacterial Activity ◽  
Derivatives Of ◽  
Number Of Bacteria

In this paper some chalcones (C1-C8) are prepared based on the reaction of one mole of substituted acetophenone with one mole of substituted benzaldehydes in the presence of (40%) sodium hydroxide as a base. Pyrazolines (P1–P8) are prepared from the reaction of chalcones (C1-C8) with hydrazine hydrate. Isoxazoline (I1-I8) is prepared from the reaction of chalcones (C1-C8) with hydroxyl amine hydrochloride in the presence of (10%) sodium hydroxide as a base. These compounds are characterized by using various physical and spectral methods. The compounds are screened for their in vitro antibacterial activity using gram-positive bacteria and gram-negative bacteria. Several derivatives of pyrazolines and isoxazolines are produced well to moderate activities against number of bacteria.

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