scholarly journals Transcriptome Sequencing and Expression Analysis of Genes Related to Anthocyanin Biosynthesis in Leaves of Malus ‘Profusion’ Infected by Japanese Apple Rust

Forests ◽  
2019 ◽  
Vol 10 (8) ◽  
pp. 665
Author(s):  
Pengyuan Liu ◽  
Yilin Wang ◽  
Jiaxin Meng ◽  
Xian Zhang ◽  
Jing Zhou ◽  
...  
Keyword(s):  
Molecular Mechanisms ◽  
Color Change ◽  
Anthocyanin Biosynthesis ◽  
Fruit Production ◽  
Amino Acid Sequences ◽  
Anthocyanin Content ◽  
Color Changes ◽  
Apple Leaves ◽  
Bhlh Genes ◽  
Myb Genes

Anthocyanins play many roles in plants, including providing protection from biotic and abiotic stresses. Japanese apple rust (Gymnosporangium yamadae Miyabe ex G. Yamada) causes serious diseases in plants of the genus Malus and results in reduced fruit production and quality. However, few studies have been done to unravel the molecular mechanisms of anthocyanin formation in rust-infected apple leaves. To identify new regulatory genes in apple leaves that may be involved in regulating rust-induced anthocyanin biosynthesis, we measured anthocyanin content and sequenced the transcriptomes of rust-infected and uninfected tissues of Malus ‘Profusion’ leaves. Significant color changes and anthocyanin enrichment (especially cyanidin-3-galactoside chloride) occurred in infected tissues, whereas no significant color change and a low anthocyanin level were observed in uninfected tissue. We identified 10,045 differentially expressed genes (DEGs) in these two tissue types, including 6021 genes that were upregulated in the infected tissue and 4024 genes that were downregulated. We also identified five structural genes that are putative regulators of anthocyanin biosynthesis. In addition, 56 MYB genes, 36 bHLH genes, and one WD40 gene were identified among the obtained DEGs. According to the phylogeny of the amino acid sequences of transcription factors known to be involved in anthocyanin biosynthesis, one MYB gene (MYB114-like) and two bHLH genes (bHLH33 and bHLHA-like) may relate to anthocyanin biosynthesis in rust-infected apple leaves. These data will provide insights into the molecular mechanisms underlying anthocyanin accumulation upon rust infection.

scholarly journals Simultaneous changes in anthocyanin, chlorophyll, and carotenoid contents produce green variegation in pink–leaved ornamental kale

BMC Genomics ◽  
2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Yang Liu ◽  
Xin Feng ◽  
Yuting Zhang ◽  
Fuhui Zhou ◽  
Pengfang Zhu
Keyword(s):  
Molecular Mechanisms ◽  
Color Change ◽  
Anthocyanin Biosynthesis ◽  
Carotenoid Biosynthesis ◽  
Anthocyanin Content ◽  
Leaf Color ◽  
Chlorophyll Metabolism ◽  
Leaf Coloration ◽  
New Varieties ◽  
Ornamental Kale

Abstract Background Anthocyanin, chlorophyll, and carotenoid pigments are widely distributed in plants, producing various colors. Ornamental kale (Brassica oleracea var. acephala DC) which has colorful inner leaves is an ideal plant to explore how these three pigments contribute to leaf color. The molecular mechanisms of the coloration in ornamental kale could provide reference for exploring the mechanisms of pigmentation in other plants. Results In this study, we sequenced the transcriptome and determined the pigment contents of an unusual cultivar of ornamental kale with three different types of leaf coloration: pink (C3), light pink (C2), and variegated pink–green (C1). A total of 23,965 differentially expressed genes were detected in pairwise comparisons among the three types of leaves. The results indicate that Bo9g058630 coding dihydroflavonol 4–reductase (DFR) and Bo3g019080 coding shikimate O–hydroxycinnamoyltransferase (HCT) acted in anthocyanin biosynthesis in pink leaves. Bo1g053420 coding pheophorbidase (PPD) and Bo3g012430 coding 15–cis–phytoene synthase (crtB) were identified as candidate genes for chlorophyll metabolism and carotenoid biosynthesis, respectively. The transcription factors TT8, MYBL2, GATA21, GLK2, and RR1 might participate in triggering the leaf color change in ornamental kale. Anthocyanin content was highest in C3 and lowest in C1. Chlorophyll and carotenoid contents were lowest in C2 and highest in C1. Conclusions Based on these findings, we suspected that the decrease in anthocyanin biosynthesis and the increase in chlorophyll and carotenoid biosynthesis might be the reason for the leaf changing from pink to variegate pink–green in this unusual cultivar. Our research provides insight into the molecular mechanisms of leaf coloration in ornamental kale, contributing to a theoretical foundation for breeding new varieties.

scholarly journals Survival Analysis to Predict How Color Influences the Shelf Life of Strawberry Leather

Foods ◽  
2022 ◽  
Vol 11 (2) ◽  
pp. 218
Author(s):  
Raquel da Silva Simão ◽  
Jaqueline Oliveira de de Moraes ◽  
Julia Beims Lopes ◽  
Ana Caroline Cichella Frabetti ◽  
Bruno Augusto Mattar Carciofi ◽  
...  
Keyword(s):  
Survival Analysis ◽  
Shelf Life ◽  
Color Change ◽  
Light Emitting Diode ◽  
Storage Conditions ◽  
Quality Parameter ◽  
Current Status ◽  
Anthocyanin Content ◽  
Total Anthocyanin ◽  
Color Changes

Color change of fruit-based products during storage is an important quality parameter to determine their shelf life. In this study, a combination of relative humidity (RH) and illumination was evaluated on the stability of strawberry leathers. Samples were conditioned at 25 °C, in chambers with RH of 22.5% and 52.3% and under two levels of illumination (no illumination and with a light-emitting diode (LED) illumination at 1010 lx). Samples were analyzed during storage by instrumental color measurements, total anthocyanin content, and consumers’ acceptance/rejection of the product color. Current-status survival analysis was performed to estimate the sensory-based shelf-life of the strawberry leather. The chromatic parameters (a* and ΔE* values) and anthocyanin content changed with increasing storage time and RH, fitting a first-order fractional conversion model. Samples conditioned at the higher RH showed a higher reduction of a* values and anthocyanins losses when stored under LED illumination than those without illumination. The increase of RH resulted in a faster increase of the consumer rejection probability and a shorter shelf life of the strawberry leather. For 50% of consumers’ rejection, the sensory shelf life of the strawberry leather equilibrated at 22.5% RH was estimated as at least 54 days, while it was reduced to approximately 2 days at 52.3% RH. The red chromatic parameter (a* value) strongly correlated to the percentage of consumer rejection in all storage conditions, suggesting that this analytical parameter can be useful as a predictor of strawberry leather’s shelf life. Therefore, the results of this study show the applicability of an approach that integrates instrumental and sensory data to acquire faster information on color changes during the storage of strawberry leather and product shelf-life prediction.

scholarly journals RNA-Seq-Based Profiling of pl Mutant Reveals Transcriptional Regulation of Anthocyanin Biosynthesis in Rice (Oryza sativa L.)

2021 ◽  
Vol 22 (18) ◽  
pp. 9787
Author(s):  
Ruonan Xu ◽  
Ronghui Pan ◽  
Yuchan Zhang ◽  
Yanlei Feng ◽  
Ujjal Kumar Nath ◽  
...  
Keyword(s):  
Molecular Mechanisms ◽  
Anthocyanin Biosynthesis ◽  
Oryza Sativa L ◽  
Transcriptional Profiling ◽  
Expression Patterns ◽  
Regulatory Gene ◽  
Leaf Color ◽  
Phenotypic Marker ◽  
Bhlh Genes ◽  
Purple Leaf

Purple-colored leaves in plants attain much interest for their important biological functions and could be a potential source of phenotypic marker in selecting individuals in breeding. The transcriptional profiling helps to precisely identify mechanisms of leaf pigmentation in crop plants. In this study, two genetically unlike rice genotypes, the mutant purple leaf (pl) and wild (WT) were selected for RNA-sequencing and identifying the differentially expressed genes (DEGs) that are regulating purple leaf color. In total, 609 DEGs were identified, of which 513 and 96 genes were up- and down-regulated, respectively. The identified DEGs are categorized into metabolic process, carboxylic acid biosynthesis, phenylpropanoids, and phenylpropanoid biosynthesis process enrichment by GO analysis. Kyoto Encyclopedia of Genes and Genomes (KEGG) confirmed their association with phenylpropanoid synthesis, flavonoid synthesis, and phenylalanine metabolism. To explore molecular mechanism of purple leaf color, a set of anthocyanin biosynthetic and regulatory gene expression patterns were checked by qPCR. We found that OsPAL (Os02g0626100, Os02g0626400, Os04g0518400, Os05g0427400 and Os02g0627100), OsF3H (Os03g0122300), OsC4HL (Os05g0320700), and Os4CL5 (Os08g0448000) are associated with anthocyanin biosynthesis, and they were up-regulated in pl leaves. Two members of regulatory MYB genes (OsMYB55; Os05g0553400 and Os08g0428200), two bHLH genes (Os01g0196300 and Os04g0300600), and two WD40 genes (Os11g0132700 and Os11g0610700) also showed up-regulation in pl mutant. These genes might have significant and vital roles in pl leaf coloration and could provide reference materials for further experimentation to confirm the molecular mechanisms of anthocyanin biosynthesis in rice.

scholarly journals Color changes of blackberry as affected by freezing rate

2008 ◽  
pp. 63-68 ◽  
Author(s):  
Dobrila Randjelovic ◽  
Ljubo Vracar ◽  
Aleksandra Tepic
Keyword(s):  
Chemical Analysis ◽  
Sensory Evaluation ◽  
Color Change ◽  
Ph Value ◽  
Market Value ◽  
Anthocyanin Content ◽  
Preparation Process ◽  
Surface Color ◽  
Color Changes ◽  
Reference Parameters

Fast frozen blackberry partially change its surface color from characteristic black to copper-redish color. This change decreases the market value, especially when the product is intended for export. For these reasons classic tunnels for slow freezing are being more widely used nowadays. In order to clarify mentioned phenomena, a detailed monitoring of preparation process and freezing, as well as changes of frozen blackberry fruits in industrial conditions was carried out. Along with sensory evaluation of surface color changes, chemical analysis of reference parameters of fresh and frozen fruits were performed. The results of sensory evaluation confirmed evident color change of fruits frozen by slow (and fast) treatment; the chemical analysis confirmed unchanged total solids and anthocyanin content, as well as changes in pH value and vitamin C, in comparison to fresh blackberry fruits.

scholarly journals Transcriptome profiling of anthocyanin-related genes reveals effects of light intensity on anthocyanin biosynthesis in red leaf lettuce

PeerJ ◽  
2018 ◽  
Vol 6 ◽  
pp. e4607 ◽  
Author(s):  
Yanzhao Zhang ◽  
Shuzhen Xu ◽  
Yanwei Cheng ◽  
Zhengfeng Peng ◽  
Jianming Han
Keyword(s):  
Light Intensity ◽  
Molecular Mechanisms ◽  
De Novo ◽  
Anthocyanin Biosynthesis ◽  
Gene Annotation ◽  
High Irradiance ◽  
High Light ◽  
Anthocyanin Content ◽  
Structural Genes ◽  
Leaf Lettuce

Red leaf lettuce (Lactuca sativaL.) is popular due to its high anthocyanin content, but poor leaf coloring often occurs under low light intensity. In order to reveal the mechanisms of anthocyanins affected by light intensity, we compared the transcriptome ofL. sativaL. var.capitataunder light intensities of 40 and 100 μmol m−2s−1. A total of 62,111 unigenes were de novo assembled with an N50 of 1,681 bp, and 48,435 unigenes were functionally annotated in public databases. A total of 3,899 differentially expressed genes (DEGs) were detected, of which 1,377 unigenes were up-regulated and 2,552 unigenes were down-regulated in the high light samples. By Kyoto Encyclopedia of Genes and Genomes enrichment analysis, the DEGs were significantly enriched in 14 pathways. Using gene annotation and phylogenetic analysis, we identified seven anthocyanin structural genes, includingCHS,CHI,F3H,F3′H,DFR,ANS, and3GT, and two anthocyanin transport genes,GSTandMATE. In terms of anthocyanin regulatory genes, five MYBs and one bHLH gene were identified. AnHY5gene was discovered, which may respond to light-signaling and regulate anthocyanin structural genes. These genes showed a log2FC of 2.7–9.0 under high irradiance, and were validated using quantitative real-time-PCR. In conclusion, our results indicated transcriptome variance in red leaf lettuce under low and high light intensity, and observed a anthocyanin biosynthesis and regulation pattern. The data should further help to unravel the molecular mechanisms of anthocyanins influenced by light intensity.

scholarly journals Molecular and Metabolic Insights into Anthocyanin Biosynthesis for Leaf Color Change in Chokecherry (Padus virginiana)

2021 ◽  
Vol 22 (19) ◽  
pp. 10697
Author(s):  
Xiang Li ◽  
Yan Li ◽  
Minghui Zhao ◽  
Yanbo Hu ◽  
Fanjuan Meng ◽  
...  
Keyword(s):  
Biosynthetic Pathway ◽  
Color Change ◽  
Anthocyanin Biosynthesis ◽  
Transcriptional Regulators ◽  
Anthocyanin Content ◽  
Leaf Color ◽  
Red Color ◽  
Genes Encoding ◽  
Selection For ◽  
The Difference

Chokecherry (Padus virginiana L.) is an important landscaping tree with high ornamental value because of its colorful purplish-red leaves (PRL). The quantifications of anthocyanins and the mechanisms of leaf color change in this species remain unknown. The potential biosynthetic and regulatory mechanisms and the accumulation patterns of anthocyanins in P. virginiana that determine three leaf colors were investigated by combined analysis of the transcriptome and the metabolome. The difference of chlorophyll, carotenoid and anthocyanin content correlated with the formation of P. virginiana leaf color. Using enrichment and correlation network analysis, we found that anthocyanin accumulation differed in different colored leaves and that the accumulation of malvidin 3-O-glucoside (violet) and pelargonidin 3-O-glucoside (orange-red) significantly correlated with the leaf color change from green to purple-red. The flavonoid biosynthesis genes (PAL, CHS and CHI) and their transcriptional regulators (MYB, HD-Zip and bHLH) exhibited specific increased expression during the purple-red periods. Two genes encoding enzymes in the anthocyanin biosynthetic pathway, UDP glucose-flavonoid 3-O-glucosyl-transferase (UFGT) and anthocyanidin 3-O-glucosyltransferase (BZ1), seem to be critical for suppressing the formation of the aforesaid anthocyanins. In PRL, the expression of the genes encoding for UGFT and BZ1 enzymes was substantially higher than in leaves of other colors and may be related with the purple-red color change. These results may facilitate genetic modification or selection for further improvement in ornamental qualities of P. virginiana.

scholarly journals Light- and Temperature-Induced Expression of an R2R3-MYB Gene Regulates Anthocyanin Biosynthesis in Red-Fleshed Kiwifruit

2019 ◽  
Vol 20 (20) ◽  
pp. 5228 ◽  
Author(s):  
Min Yu ◽  
Yuping Man ◽  
Yanchang Wang
Keyword(s):  
Transcriptional Activation ◽  
Anthocyanin Biosynthesis ◽  
Physiological Role ◽  
Regulatory Function ◽  
Anthocyanin Content ◽  
Anthocyanin Accumulation ◽  
Virus Induced Gene Silencing ◽  
Highly Correlated ◽  
Myb Genes ◽  
R2r3 Myb

The R2R3 MYB genes associated with the flavonoid/anthocyanidin pathway feature two repeats, and represent the most abundant classes of MYB genes in plants; however, the physiological role and regulatory function of most R2R3 MYBs remain poorly understood in kiwifruit (Actinidia). Here, genome-wide analysis identified 155 R2R3-MYBs in the ‘Red 5′ version of the Actinidia chinensis genome. Out of 36 anthocyanin-related AccR2R3-MYBs, AcMYB10 was the most highly expressed in inner pericarp of red-fleshed kiwifruit. The expression of AcMYB10 was highly correlated with anthocyanin accumulation in natural pigmentation during fruit ripening and light-/temperature-induced pigmentation in the callus. AcMYB10 is localized in the nuclei and has transcriptional activation activity. Overexpression of AcMYB10 elevates anthocyanin accumulation in transgenic A. chinensis. In comparison, A. chinensis fruit infiltrated with virus-induced gene silencing showed delayed red coloration, lower anthocyanin content, and lower expression of AcMYB10. The transient expression experiment in Nicotiana tabacum leaves and Actinidia arguta fruit indicated the interaction of AcMYB10 with AcbHLH42 might strongly activate anthocyanin biosynthesis by activating the transcription of AcLDOX and AcF3GT. In conclusion, this study provides novel molecular information about R2R3-MYBs in kiwifruit, advances our understanding of light- and temperature-induced anthocyanin accumulation, and demonstrates the important function of AcMYB10 in the biosynthesis of anthocyanin in kiwifruit.

scholarly journals Development of Aroma Volatiles and Color during Postharvest Ripening of `Kent' Strawberries

1995 ◽  
Vol 120 (4) ◽  
pp. 650-655 ◽  
Author(s):  
Artur Miszczak ◽  
Charles F. Forney ◽  
Robert K. Prange
Keyword(s):  
Weight Loss ◽  
Color Change ◽  
Anthocyanin Content ◽  
Fresh Weight ◽  
Surface Color ◽  
Aroma Volatiles ◽  
Color Changes ◽  
Relative Production ◽  
Postharvest Ripening ◽  
Volatile Production

`Kent' strawberries were harvested at red, pink, and white stages of development, and stored at 15C in the light. Fruit were sampled over a 10-day period and evaluated for volatile production and surface color. Volatile production by red and pink fruit peaked after 4 days of storage. Maximum volatile production by red fruit was 8- and 25-fold greater than maximum production by pink and white fruit, respectively. Aroma volatiles were not detected in the headspace over white berries until 4 days following harvest after which volatile production increased through the tenth day of storage. Changes in the surface color of white berries during postharvest ripening coincided with the production of volatiles. In another experiment, red, pink, and white `Kent' strawberries were stored for 3 days at 10 or 20C in the dark or light. Fruit were then evaluated for volatile production, weight loss, anthocyanin content, and surface color changes. White berries produced volatile esters after 3 days of storage at 20C in the light. Both light and temperature influenced the relative production of the volatiles produced by pink fruit. Fresh weight loss, color change, and anthocyanin content were temperature and light dependent.

scholarly journals The Light-Induced WD40-Repeat Transcription Factor DcTTG1 Regulates Anthocyanin Biosynthesis in Dendrobium candidum

2021 ◽  
Vol 12 ◽  
Author(s):  
Ning Jia ◽  
Jingjing Wang ◽  
Yajuan Wang ◽  
Wei Ye ◽  
Jiameng Liu ◽  
...  
Keyword(s):  
Transcription Factor ◽  
Molecular Mechanisms ◽  
Anthocyanin Biosynthesis ◽  
Raw Material ◽  
Anthocyanin Synthesis ◽  
Anthocyanin Content ◽  
Anthocyanin Accumulation ◽  
Wd40 Repeat ◽  
Strong Light ◽  
Dendrobium Candidum

Dendrobium candidum is used as a traditional Chinese medicine and as a raw material in functional foods. D. candidum stems are green or red, and red stems are richer in anthocyanins. Light is an important environmental factor that induces anthocyanin accumulation in D. candidum. However, the underlying molecular mechanisms have not been fully unraveled. In this study, we exposed D. candidum seedlings to two different light intensities and found that strong light increased the anthocyanin content and the expression of genes involved in anthocyanin biosynthesis. Through transcriptome profiling and expression analysis, we identified a WD40-repeat transcription factor, DcTTG1, whose expression is induced by light. Yeast one-hybrid assays showed that DcTTG1 binds to the promoters of DcCHS2, DcCHI, DcF3H, and DcF3′H, and a transient GUS activity assay indicated that DcTTG1 can induce their expression. In addition, DcTTG1 complemented the anthocyanin deficiency phenotype of the Arabidopsis thaliana ttg1-13 mutant. Collectively, our results suggest that light promotes anthocyanin accumulation in D. candidum seedlings via the upregulation of DcTTG1, which induces anthocyanin synthesis-related gene expression.

Transcriptomic analysis reveals anthocyanin biosynthesis regulation in blueberry (Vaccinium ashei) fruit

2021 ◽  
Author(s):  
Xuan Gao ◽  
Qiang Chen ◽  
Yan Yang ◽  
Bo Zhu ◽  
Jiaxin Xiao
Keyword(s):  
Fruit Ripening ◽  
Fruit Development ◽  
Late Stage ◽  
Molecular Mechanisms ◽  
De Novo ◽  
Anthocyanin Biosynthesis ◽  
Anthocyanin Content ◽  
Vaccinium Ashei ◽  
Late Stages ◽  
Biosynthesis Regulation

Blueberry (Vaccinium ashei) is a popular fruit due to its high anthocyanin content. This study aimed to analyze the transcriptome profile of V. ashei cv. ‘Brightwell’ fruits at different stages of development. A total of 314.26 GB of clean data were obtained and de novo assembled into 254,196 unigenes. In comparisons between the early and late stages of fruit ripening, 27 genes (including PAL, CHS, F3H, F3ʹH, F3ʹ5ʹH, LDOX, etc.) were found to cover the main steps in the anthocyanin biosynthesis pathway. Most of these genes were highly expressed in the late stage of fruit development, suggesting that anthocyanin mainly accumulate in the late stage. During the late stage of fruit development, most structural and regulatory genes such as F3ʹ5ʹH and F3ʹH, which are involved in the anthocyanin biosynthetic pathway, were upregulated, causing the fruit to turn blue. Decreased expression of a large number of chloroplast-related genes during the fruit ripening period could explain why the green fruit color fades over time. Additionally, abscisic acid and ethylene may play positive roles in promoting fruit ripening and anthocyanin accumulation. This research reveals the transcriptomic characteristics of immature and mature fruits and enhances our understanding of the molecular mechanisms of anthocyanin biosynthesis and accumulation in blueberry fruit.

Sign in / Sign up

Export Citation Format

Share Document