scholarly journals Breed, Diet, and Interaction Effects on Adipose Tissue Transcriptome in Iberian and Duroc Pigs Fed Different Energy Sources

Genes ◽  
2019 ◽  
Vol 10 (8) ◽  
pp. 589 ◽  
Author(s):  
Rita Benítez ◽  
Nares Trakooljul ◽  
Yolanda Núñez ◽  
Beatriz Isabel ◽  
Eduard Murani ◽  
...  

In this study, we analyzed the effects of breed, diet energy source, and their interaction on adipose tissue transcriptome in growing Iberian and Duroc pigs. The study comprised 29 Iberian and 19 Duroc males, which were kept under identical management conditions except the nutritional treatment. Two isoenergetic diets were used with 6% high oleic sunflower oil (HO) or carbohydrates (CH) as energy sources. All animals were slaughtered after 47 days of treatment at an average live weight of 51.2 kg. Twelve animals from each breed (six fed each diet) were employed for ham subcutaneous adipose tissue RNA-Seq analysis. The data analysis was performed using two different bioinformatic pipelines. We detected 837 and 1456 differentially expressed genes (DEGs) according to breed, depending on the pipeline. Due to the strong effect of breed on transcriptome, the effect of the diet was separately evaluated in the two breeds. We identified 207 and 57 DEGs depending on diet in Iberian and Duroc pigs, respectively. A joint analysis of both effects allowed the detection of some breed–diet interactions on transcriptome, which were inferred from RNA-Seq and quantitative PCR data. The functional analysis showed the enrichment of functions related to growth and tissue development, inflammatory response, immune cell trafficking, and carbohydrate and lipid metabolism, and allowed the identification of potential regulators. The results indicate different effects of diet on adipose tissue gene expression between breeds, affecting relevant biological pathways.

Animals ◽  
2021 ◽  
Vol 11 (12) ◽  
pp. 3505
Author(s):  
Rita Benítez ◽  
Yolanda Núñez ◽  
Miriam Ayuso ◽  
Beatriz Isabel ◽  
Miguel A. Fernández-Barroso ◽  
...  

This experiment was conducted to investigate the effects of developmental stage, breed, and diet energy source on the genome-wide expression, meat quality traits, and tissue composition of biceps femoris muscle in growing pure Iberian and Duroc pigs. The study comprised 59 Iberian (IB) and 19 Duroc (DU) animals, who started the treatment at an average live weight (LW) of 19.9 kg. The animals were kept under identical management conditions and fed two diets with different energy sources (6% high oleic sunflower oil or carbohydrates). Twenty-nine IB animals were slaughtered after seven days of treatment at an average LW of 24.1 kg, and 30 IB animals plus all the DU animals were slaughtered after 47 days at an average LW of 50.7 kg. The main factors affecting the muscle transcriptome were age, with 1832 differentially expressed genes (DEGs), and breed (1055 DEGs), while the effect of diet on the transcriptome was very small. The results indicated transcriptome changes along time in Iberian animals, being especially related to growth and tissue development, extracellular matrix (ECM) composition, and cytoskeleton organization, with DEGs affecting relevant functions and biological pathways, such as myogenesis. The breed also affected functions related to muscle development and cytoskeleton organization, as well as functions related to solute transport and lipid and carbohydrate metabolism. Taking into account the results of the two main comparisons (age and breed effects), we can postulate that the Iberian breed is more precocious than the Duroc breed, regarding myogenesis and muscle development, in the studied growing stage.


1983 ◽  
Vol 36 (3) ◽  
pp. 435-443 ◽  
Author(s):  
R. G. Campbell ◽  
A. C. Dunkin

ABSTRACT1. Forty-two piglets were used to study the effects of a low, medium or high level of energy intake (1·0, 1·4 and 1·9 MJ gross energy per kg W0·75 per day respectively) from 1·8 to 10 kg live weight and a low or high level of energy intake (1·4 and 1·8 MJ digestible energy per kg W075 per day respectively) subsequent to 10 kg live weight on growth performance, body composition and the cellularity of muscle and subcutaneous adipose tissue to 30 kg live weight. During both live-weight periods all pigs received the same daily intake of crude protein.2. Raising energy intake in the period prior to 10 kg live weight increased (P < 0·-05) growth rate, body fat content and fat cell size but reduced food conversion efficiency, body protein and water (P < 0·05) and muscle deoxyribonucleic acid. These effects on body composition and muscle deoxyribonucleic acid at 10 kg live weight were still evident at 30 kg live weight.3. Subsequent to 10 kg live weight, pigs previously given the lowest energy intake deposited protein and fat at a faster rate and exhibited more rapid and efficient growth (P < 0·05) than pigs previously given the high energy intake.4. At 30 kg live weight pigs given the two higher levels of energy intake before 10 kg live weight contained less deoxyribonucleic acid (P < 0·05) in subcutaneous adipose tissue and had larger (P < 0·05) fat cells than those given the lowest energy intake before 10 kg live weight.5. The effects of energy intake subsequent to 10 kg live weight on growth performance, body composition and the cellularity of muscle and adipose tissue were qualitatively the same as those for the period 1·8 to 10 kg live weight.


2021 ◽  
Vol 12 ◽  
Author(s):  
Prasad Srikakulapu ◽  
Aditi Upadhye ◽  
Fabrizio Drago ◽  
Heather M. Perry ◽  
Sai Vineela Bontha ◽  
...  

Chemokine receptor-6 (CCR6) mediates immune cell recruitment to inflammatory sites and has cell type-specific effects on diet-induced atherosclerosis in mice. Previously we showed that loss of CCR6 in B cells resulted in loss of B cell-mediated atheroprotection, although the B cell subtype mediating this effect was unknown. Perivascular adipose tissue (PVAT) harbors high numbers of B cells including atheroprotective IgM secreting B-1 cells. Production of IgM antibodies is a major mechanism whereby B-1 cells limit atherosclerosis development. Yet whether CCR6 regulates B-1 cell number and production of IgM in the PVAT is unknown. In this present study, flow cytometry experiments demonstrated that both B-1 and B-2 cells express CCR6, albeit at a higher frequency in B-2 cells in both humans and mice. Nevertheless, B-2 cell numbers in peritoneal cavity (PerC), spleen, bone marrow and PVAT were no different in ApoE−/−CCR6−/− compared to ApoE−/−CCR6+/+ mice. In contrast, the numbers of atheroprotective IgM secreting B-1 cells were significantly lower in the PVAT of ApoE−/−CCR6−/− compared to ApoE−/−CCR6+/+ mice. Surprisingly, adoptive transfer (AT) of CD43− splenic B cells into B cell-deficient μMT−/−ApoE−/− mice repopulated the PerC with B-1 and B-2 cells and reduced atherosclerosis when transferred into ApoE−/−CCR6+/+sIgM−/− mice only when those cells expressed both CCR6 and sIgM. CCR6 expression on circulating human B cells in subjects with a high level of atherosclerosis in their coronary arteries was lower only in the putative human B-1 cells. These results provide evidence that B-1 cell CCR6 expression enhances B-1 cell number and IgM secretion in PVAT to provide atheroprotection in mice and suggest potential human relevance to our murine findings.


Data in Brief ◽  
2021 ◽  
pp. 107647
Author(s):  
Letizia Messa ◽  
Federica Rey ◽  
Cecilia Pandini ◽  
Bianca Barzaghini ◽  
Giancarlo Micheletto ◽  
...  

1982 ◽  
Vol 35 (2) ◽  
pp. 185-192 ◽  
Author(s):  
R. G. Campbell ◽  
A. C. Dunkin

ABSTRACTForty-two piglets were used to study the effects of heavy and light birth weight, and of four levels of feeding, ranging from 37 to 91 g dry matter per kg M0 75 per day, on growth between 5 days of age and 6·5kg live weight, and on body composition, and the cellularity of muscle and subcutaneous adipose tissue, at the latter weight. The effects of birth weight and level of feeding to 6·5 kg on performance between 6·5 and 11 -5 kg, and on body composition at 11·5 kg, were also investigated.Light birth weight piglets grew more slowly to 6·5 kg than those of heavy birth weight (P < 0·05). However, birth weight had no effect on food conversion efficiency or on body composition.Each increment in feeding level resulted in increases in growth rate (P < 0·01), body fat content (P < 0·01) and average fat-cell diameter (P < 0·01) at 6·5 kg, but in decreases in body protein and water (P < 0·01).The weight of the m. semitendinosus at 6·5 kg was unaffected by either birth weight or level of feeding. However, the deoxyribonucleic acid content of the muscle at both 6·5 and 11·5 kg was less in light birth weight piglets fed at the lowest level prior to 6·5 kg (P < 0·05). These piglets also exhibited poorer growth performance subsequent to 6·5 kg than their heavier birth weight counterparts.Nevertheless, piglets of both light and heavy birth weight, fed at the lowest level to 6·5 kg, grew faster and more effficiently between 6·5 and 11·5kg (P < 0·05), and were leaner at 11·5kg than those previously fed at the highest level (P < 0·01). Average fat-cell diameter at 11·5kg was also less in pigs fed at the lowest level prior to 6·5kg (P < 0·01). Total deoxyribonucleic acid in subcutaneous adipose tissue at 11·5kg was unaffected by either birth weight or level of feeding prior to 6·5 kg.


2014 ◽  
Vol 46 (9) ◽  
pp. 328-337 ◽  
Author(s):  
S. Selim ◽  
S. Salin ◽  
J. Taponen ◽  
A. Vanhatalo ◽  
T. Kokkonen ◽  
...  

Overfeeding during the dry period may predispose cows to increased insulin resistance (IR) with enhanced postpartum lipolysis. We studied gene expression in the liver and subcutaneous adipose tissue (SAT) of 16 Finnish Ayrshire dairy cows fed either a controlled energy diet [Con, 99 MJ/day metabolizable energy (ME)] during the last 6 wk of the dry period or high-energy diet (High, 141 MJ/day ME) for the first 3 wk and then gradually decreasing energy allowance during 3 wk to 99 MJ/day ME before the expected parturition. Tissue biopsies were collected at −10, 1, and 9 days, and blood samples at −10, 1, and 7 days relative to parturition. Overfed cows had greater dry matter, crude protein, and ME intakes and ME balance before parturition. Daily milk yield, live weight, and body condition score were not different between treatments. The High cows tended to have greater plasma insulin and lower glucagon/insulin ratio compared with Con cows. No differences in circulating glucose, glucagon, nonesterified fatty acids and β-hydroxybutyrate concentrations, and hepatic triglyceride contents were observed between treatments. Overfeeding compared with Con resulted in lower CPT1A and PCK1 and a tendency for lower G6PC and PC expression in the liver. The High group tended to have lower RETN expression in SAT than Con. No other effects of overfeeding on the expression of genes related to IR in SAT were observed. In conclusion, overfeeding energy prepartum may have compromised hepatic gluconeogenic capacity and slightly affected IR in SAT based on gene expression.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Aditya Saxena ◽  
Nitish Mathur ◽  
Pradeep Tiwari ◽  
Sandeep Kumar Mathur

AbstractThe prevalence of Type 2 Diabetes has reached an epidemic proportion particularly in south Asian countries. We have earlier shown that the anatomical fat distribution, termed ‘thin fat phenotype’ in this population indeed plays a major role for their T2D-predisposition it is indeed the sick fat or adiposopathy, which is the root cause of metabolic syndrome and diabetes and affects both—peripheral, as well as visceral adipose tissue compartments. In present study, we have attempted to unravel the altered regulatory mechanisms at the level of transcription factors, and miRNAs those may likely accounts to T2D pathophysiology in femoral subcutaneous adipose tissue. We prioritized transcription factors and protein kinases as likely upstream regulators of obtained differentially expressed genes in this RNA-seq study. An inferred network of these upstream regulators was then derived and the role of TFs and miRNAs in T2D pathophysiology was explored. In conclusions, this RNS-Seq study finds that peripheral subcutaneous adipose tissue among Asian Indians show pathology characterized by altered lipid, glucose and protein metabolism, adipogenesis defect and inflammation. A network of regulatory transcription factors, protein kinases and microRNAs have been imputed which converge on the process of adipogenesis. As the majority of these genes also showed altered expression in diabetics and some of them are also circulatory, therefore they deserve further investigation for potential clinical diagnostic and therapeutic applications.


Blood ◽  
2018 ◽  
Vol 132 (Supplement 1) ◽  
pp. 102-102
Author(s):  
Linda Resar ◽  
Donna Marie Williams ◽  
Lingling Xian ◽  
Wenyan Lu ◽  
Briyana Chisholm ◽  
...  

Abstract Introduction: Myeloproliferative neoplasms (MPN) are clonal hematopoietic stem cell (HSC) disorders characterized by overproduction of mature blood cells and increased risk of transformation to myelofibrosis (MF) and acute myeloid leukemia (AML), although molecular mechanisms driving disease progression remain elusive. While most patients who acquire a JAK2V617F mutation in CD34+ cells present with chronic, indolent Polycythemia Vera (PV), ~25% will progress to MF or AML. High Mobility Group A1/2 (HMGA1/2) genes encode oncogenic chromatin remodeling proteins which are overexpressed in aggressive leukemia where they portend adverse outcomes. In murine models, Hmga1/2 overexpression drives clonal expansion and uncontrolled proliferation. HMGA1/2 genes are also overexpressed in MPN with disease progression. We therefore sought to: 1) test the hypothesis that HMGA proteins are required for leukemic transformation and rational therapeutic targets in MPN progression, and, 2) identify mechanisms mediated by HMGA1/2 during disease progression. Methods: We measured HMGA1/2 in JAK2V617F mutant human AML cell lines from MPN patients (DAMI, SET-2), CD34+ cells from PV patients during chronic and transformation phases, and JAK2V617F transgenic murine models of PV (transgenic JAK2V617F) and PV-AML (transgenic JAK2V617F/MPLSV; Blood 2015;126:484). To elucidate HMGA1/2 function, we silenced HMGA1 or HMGA2 via short hairpin RNA in human MPN-AML cell lines (DAMI, SET-2) and assessed proliferation, colony formation, and leukemic engraftment in immunodeficient mice. To further assess Hmga1 function in vivo, we crossed mice with heterozygous Hmga1 deficiency onto murine models of PV and PV-AML. Finally, to dissect molecular mechanisms underlying HMGA1, we compared RNA-Seq from MPN-AML cell lines (DAMI, SET-2) after silencing HMGA1/2 to that of controls and applied Ingenuity Pathway Analysis. Results: HMGA1/2 mRNA are up-regulated in all JAK2V617F-positive contexts, including primary human PV CD34+ cells and total bone marrow from JAK2V617F mouse models for PV compared to controls. Further, there is a marked up-regulation in both HMGA1/2 in CD34+ cells from PV patients after transformation to MF or AML and in leukemic blasts from our PV-AML mouse model compared to PV mice. Overexpression of HMGA1/2 also correlates with clonal dominance of human JAK2V617F-homozygous stem cells and additional mutations of epigenetic regulators (EZH2, SETBP1). Silencing HMGA1 or HMGA2 in human MPN-AML cell lines (DAMI, SET-2) dramatically halts proliferation, disrupts clonogenicity, and prevents leukemic engraftment in mice. Further, heterozygous Hmga1 deficiency decreases splenic enlargement in PV mouse models with advancing age. Moreover, heterozygous Hmga1 deficiency prolongs survival in the transgenic PV-AML murine model with fulminant leukemia and early mortality. PV-AML mice survived a median of 5 weeks whereas PV-AML mice with heterozygous Hmga1 deficiency survive a median of 12 weeks (P< 0.002). The leukemic burden was also decreased in mice with Hmga1 deficiency. Preliminary RNA-Seq analyses from DAMI and SET-2 cells show that HMGA1 drives pathways involved in Th1/Th2 activation, chemotaxis, cell-cell signaling, myeloid cell accumulation and other immune cell trafficking, inflammation, and injury, suggesting that HMGA1 co-opts immune and inflammatory networks to drive tumor progression. Surprisingly, atherosclerosis pathways are also induced by HMGA1. Conclusions: HMGA1/2 genes are overexpressed in MPN with highest levels in more advanced disease (MF, AML) both in primary human tumors and murine models. Strikingly, silencing HMGA1 or HMGA2 halts proliferation and clonogenicity in vitro and prevents leukemic engraftment in vivo. Further, heterozygous Hmga1 deficiency prolongs survival in a murine model of fulminant MPN AML and decreases tumor burdens. Finally, preliminary RNA-Seq analyses suggest that HMGA1 amplifies transcriptional networks involved in immune cell trafficking and inflammation to drive tumor progression. Unexpectedly, HMGA1 also regulates pathways involved in atherosclerosis, implicating HMGA1 as a novel link between clonal hematopoiesis and cardiovascular disease. Our findings further highlight HMGA1/2 as a key molecular switch for leukemic transformation in MPN and opens the door to novel therapeutic approaches to prevent disease progression. Disclosures No relevant conflicts of interest to declare.


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