scholarly journals Functions of Jasmonic Acid in Plant Regulation and Response to Abiotic Stress

2020 ◽  
Vol 21 (4) ◽  
pp. 1446 ◽  
Author(s):  
Jia Wang ◽  
Li Song ◽  
Xue Gong ◽  
Jinfan Xu ◽  
Minhui Li
Keyword(s):  
Transcription Factors ◽  
Abiotic Stress ◽  
Jasmonic Acid ◽  
Signaling Pathways ◽  
Signaling Pathway ◽  
Large Scale ◽  
Higher Plants ◽  
Complex Signal ◽  
Ja Signaling ◽  
Signal Network

Jasmonic acid (JA) is an endogenous growth-regulating substance, initially identified as a stress-related hormone in higher plants. Similarly, the exogenous application of JA also has a regulatory effect on plants. Abiotic stress often causes large-scale plant damage. In this review, we focus on the JA signaling pathways in response to abiotic stresses, including cold, drought, salinity, heavy metals, and light. On the other hand, JA does not play an independent regulatory role, but works in a complex signal network with other phytohormone signaling pathways. In this review, we will discuss transcription factors and genes involved in the regulation of the JA signaling pathway in response to abiotic stress. In this process, the JAZ-MYC module plays a central role in the JA signaling pathway through integration of regulatory transcription factors and related genes. Simultaneously, JA has synergistic and antagonistic effects with abscisic acid (ABA), ethylene (ET), salicylic acid (SA), and other plant hormones in the process of resisting environmental stress.

Identification of transcription factors MYC and C/EBPβ mediated regulatory networks in heart failure based on GEO dataset

2020 ◽  
Author(s):  
Haiwei Wang ◽  
Xinrui Wang ◽  
Liangpu Xu ◽  
Hua Cao
Keyword(s):  
Heart Failure ◽  
Transcription Factors ◽  
Signaling Pathways ◽  
Signaling Pathway ◽  
Insulin Signaling ◽  
Regulatory Networks ◽  
Target Genes ◽  
Transcriptional Profiling ◽  
Insulin Signaling Pathway ◽  
Failing Heart

Abstract Background: Heart failure is one of leading cause of death worldwide. However, the transcriptional profiling of heart failure is unclear. Moreover, the signaling pathways and transcription factors involving the heart failure development also are largely unknown. Using published Gene Expression Omnibus (GEO) datasets, in the present study, we aim to comprehensively analyze the differentially expressed genes in failing heart tissues, and identified the critical signaling pathways and transcription factors involving heart failure development. Methods: The transcriptional profiling of heart failure was identified from previously published gene expression datasets deposited in GSE5406, GSE16499 and GSE68316. The enriched signaling pathways and transcription factors were analyzed using DAVID website and gene set enrichment analysis (GSEA) assay. The transcriptional networks were created by Cytoscape. Results: Compared with the normal heart tissues, 90 genes were particularly differentially expressed in failing heart tissues, and those genes were associated with multiple metabolism signaling pathways and insulin signaling pathway. Metabolism and insulin signaling pathway were both inactivated in failing heart tissues. Transcription factors MYC and C/EBPβ were both negatively associated with the expression profiling of failing heart tissues in GSEA assay. Moreover, compared with normal heart tissues, MYC and C/EBPβ were down regulated in failing heart tissues. Furthermore, MYC and C/EBPβ mediated downstream target genes were also decreased in failing heart tissues. MYC and C/EBPβ were positively correlated with each other. At last, we constructed MYC and C/EBPβ mediated regulatory networks in failing heart tissues, and identified the MYC and C/EBPβ target genes which had been reported involving the heart failure developmental progress. Conclusions: Our results suggested that metabolism pathways and insulin signaling pathway, transcription factors MYC and C/EBPβ played critical roles in heart failure developmental progress.

scholarly journals Jasmonic Acid-Induced VQ-Motif-Containing Protein OsVQ13 Influences the OsWRKY45 Signaling Pathway and Grain Size by Associating with OsMPK6 in Rice

2019 ◽  
Vol 20 (12) ◽  
pp. 2917 ◽  
Author(s):  
Yuya Uji ◽  
Keita Kashihara ◽  
Haruna Kiyama ◽  
Susumu Mochizuki ◽  
Kazuya Akimitsu ◽  
...  
Keyword(s):  
Grain Size ◽  
Jasmonic Acid ◽  
Signaling Pathway ◽  
Mitogen Activated Protein Kinase ◽  
Rice Plants ◽  
Rice Bacterial Blight ◽  
Expression Of Genes ◽  
Mitogen Activated Protein ◽  
Stable Growth ◽  
Ja Signaling

Jasmonic acid (JA) is a plant hormone that plays an important role in the defense response and stable growth of rice. In this study, we investigated the role of the JA-responsive valine-glutamine (VQ)-motif-containing protein OsVQ13 in JA signaling in rice. OsVQ13 was primarily located in the nucleus and cytoplasm. The transgenic rice plants overexpressing OsVQ13 exhibited a JA-hypersensitive phenotype and increased JA-induced resistance to Xanthomonas oryzae pv. oryzae (Xoo), which is the bacteria that causes rice bacterial blight, one of the most serious diseases in rice. Furthermore, we identified a mitogen-activated protein kinase, OsMPK6, as an OsVQ13-associating protein. The expression of genes regulated by OsWRKY45, an important WRKY-type transcription factor for Xoo resistance that is known to be regulated by OsMPK6, was upregulated in OsVQ13-overexpressing rice plants. The grain size of OsVQ13-overexpressing rice plants was also larger than that of the wild type. These results indicated that OsVQ13 positively regulated JA signaling by activating the OsMPK6–OsWRKY45 signaling pathway in rice.

scholarly journals Tomato Susceptibility to Root-Knot Nematodes Requires an Intact Jasmonic Acid Signaling Pathway

2008 ◽  
Vol 21 (9) ◽  
pp. 1205-1214 ◽  
Author(s):  
Kishor K. Bhattarai ◽  
Qi-Guang Xie ◽  
Sophie Mantelin ◽  
Usha Bishnoi ◽  
Thomas Girke ◽  
...  
Keyword(s):  
Jasmonic Acid ◽  
Signaling Pathway ◽  
Array Analysis ◽  
Root Knot Nematodes ◽  
Tomato Roots ◽  
Meloidogyne Spp ◽  
Low Levels ◽  
Transcript Profiles ◽  
Ja Signaling ◽  
Compatible Interactions

Responses of resistant (Mi-1/Mi-1) and susceptible (mi-1/ mi-1) tomato (Solanum lycopersicum) to root-knot nematodes (RKNs; Meloidogyne spp.) infection were monitored using cDNA microarrays, and the roles of salicylic acid (SA) and jasmonic acid (JA) defense signaling were evaluated in these interactions. Array analysis was used to compare transcript profiles in incompatible and compatible interactions of tomato roots 24 h after RKN infestation. The jai1 and def1 tomato mutant, altered in JA signaling, and tomato transgenic line NahG, altered in SA signaling, in the presence or absence of the RKN resistance gene Mi-1, were evaluated. The array analysis identified 1,497 and 750 genes differentially regulated in the incompatible and compatible interactions, respectively. Of the differentially regulated genes, 37% were specific to the incompatible interactions. NahG affected neither Mi-1 resistance nor basal defenses to RKNs. However, jai1 reduced tomato susceptibility to RKNs while not affecting Mi-1 resistance. In contrast, the def1 mutant did not affect RKN susceptibility. These results indicate that JA-dependent signaling does not play a role in Mi-1-mediated defense; however, an intact JA signaling pathway is required for tomato susceptibility to RKNs. In addition, low levels of SA might be sufficient for basal and Mi-1 resistance to RKNs.

scholarly journals The Cotton Ghplp2 Positively Regulates Plant Defense against Verticillium Dahliae by Modulating Fatty Acid Accumulation and Jasmonic Acid Signaling Pathway

2021 ◽  
Author(s):  
Yutao Zhu ◽  
Xiaoqian Hu ◽  
Yujiao Jia ◽  
Linying Gao ◽  
Yakun Pei ◽  
...  
Keyword(s):  
Fatty Acid ◽  
Linoleic Acid ◽  
Jasmonic Acid ◽  
Plant Defense ◽  
Signaling Pathway ◽  
Linolenic Acid ◽  
Verticillium Dahliae ◽  
Transgenic Arabidopsis ◽  
Cotton Plants ◽  
Ja Signaling

Abstract Patatin-like proteins (PLPs) have nonspecific lipid acyl hydrolyze (LAH) activity, which can hydrolyze membrane lipids into fatty acids and lysophospholipids. The vital role of PLPs in plant growth and abiotic stress has been well elucidated. However, the function of PLPs in plant defense response against pathogens is still poorly understood. Here, we isolated and identified a novel cotton (Gossypium hirsutum) patatin-like protein gene GhPLP2. GhPLP2 expression was induced upon treatment with pathogens Verticillium dahliae, Fusarium xysporum, and signaling molecules jasmonic acid (JA), ethylene in cotton plants. Subcellular localization revealed that GhPLP2 was localized in the cell wall and plasma membrane. GhPLP2-silenced cotton plants showed reduced resistance to V. dahliae infection, while overexpression of GhPLP2 in Arabidopsis enhanced the resistance to V. dahliae, with mild symptoms, decreased disease index, and fungal biomass. Hypersensitive response, callose deposition, and H2O2 accumulation triggered by V. dahlia elicitor were reduced in silenced cotton plants. GhPLP2-transgenic Arabidopsis had more accumulation of JA and JA synthesis precursor linoleic acid (LA, 18:2) and α-linolenic acid (ALA, 18:3) than control plants. Consistently, linoleic acid, α-linolenic acid, and jasmonic acid have decreased in GhPLP2-silenced cotton plants. Further, the gene expression of the JA signaling pathway is up-regulated in transgenic Arabidopsis and down-regulated in silenced cotton plants, respectively. These results showed that GhPLP2 is involved in plants' resistance to V. dahliae by maintaining fatty acid metabolism pools for JA biosynthesis and activation of the JA signaling pathway.

scholarly journals Lipopolysaccharide Stimulates p62-Dependent Autophagy-Like Aggregate Clearance in Hepatocytes

2014 ◽  
Vol 2014 ◽  
pp. 1-13 ◽  
Author(s):  
Christine Chen ◽  
Meihong Deng ◽  
Qian Sun ◽  
Patricia Loughran ◽  
Timothy R. Billiar ◽  
...  
Keyword(s):  
Transcription Factors ◽  
Liver Injury ◽  
Signaling Pathways ◽  
Signaling Pathway ◽  
Energy Homeostasis ◽  
Misfolded Proteins ◽  
Wild Type ◽  
Cell Lysates ◽  
Lc3 Puncta ◽  
Tlr4 Activation

Impairment of autophagy has been associated with liver injury. TLR4-stimulation by LPS upregulates autophagy in hepatocytes, although the signaling pathways involved remain elusive. The objective of this study was to determine the signaling pathway leading to LPS-stimulated autophagy in hepatocytes. Cell lysates from livers of wild type (WT; C57BL/6) mice given LPS (5 mg/kg-IP) and hepatocytes from WT, TLR4ko, and MyD88ko mice treated with LPS (100 ng/mL) up to 24 h were collected. LC3II, p62/SQSTM1, Nrf2, and beclin1 levels were determined by immunoblot, immunofluorescence, and qPCR. Autophagy-like activation was measured by GFP-LC3-puncta formation and LC3II-expression. Beclin1, Nrf2, p62, MyD88, and TIRAP were knocked-down using siRNA. LC3II-expression increased in both liver and hepatocytes after LPS and was dependent on TLR4. Beclin1 expression did not increase after LPS in hepatocytes and beclin1-knockdown did not affect LC3II levels. In hepatocytes given LPS, expression of p62 increased and p62 colocalized with LC3. p62-knockdown prevented LC3II puncta formation. LPS-induced LC3II/p62-puncta also required MyD88/TIRAP signaling and localization of both Nrf2 and NFκB transcription factors to the nucleus to upregulate p62-expression. Therefore, TLR4-activation by LPS in hepatocytes induces a p62-mediated, not beclin1-mediated, autophagy-like clearance pathway that is hepatoprotective by clearing aggregate-prone or misfolded proteins from the cytosol and preserving energy homeostasis under stress.

scholarly journals Jasmonic Acid-dependent MYC Transcription Factors Bind to a Tandem G-box Motif in the YUCCA8 and YUCCA9 Promoters to Regulate Biotic Stress Responses

2021 ◽  
Author(s):  
Marta-Marina Pérez-Alonso ◽  
Betriz Sánchez-Parra ◽  
Paloma Ortiz-García ◽  
Estrella Santamaría ◽  
Isabel Díaz ◽  
...  
Keyword(s):  
Transcription Factors ◽  
Jasmonic Acid ◽  
Stress Responses ◽  
Pyruvic Acid ◽  
Biotic Stress ◽  
De Novo ◽  
Higher Plants ◽  
Plant Responses ◽  
Mechanical Wounding ◽  
Promoter Regions

The indole-3-pyruvic acid pathway is the major route for auxin biosynthesis in higher plants. Tryptophan aminotransferases (TAA1/TAR) and members of the YUCCA family of flavin-containing monooxygenases catalyze the conversion of L-tryptophan via indole-3-pyruvic acid into indole-3-acetic acid (IAA). It has been described that locally produced jasmonic acid (JA) in response to mechanical wounding, triggers de novo-formation of IAA through the induction of two YUCCA genes, YUC8 and YUC9. Here, we report the direct involvement of a small number of basic helix-loop-helix transcription factors of the MYC family in this process. We show that the JA-mediated regulation of YUC8 and YUC9 gene expression depends on the abundance of MYC2, MYC3, and MYC4. In support of this observation, seedlings of myc knockout mutants displayed a strongly reduced response to JA-mediated IAA formation. In addition, transactivation assays provided experimental evidence for the binding of the MYC transcription factors to a particular tandem G-box motif abundant in the promoter regions of YUC8 and YUC9, but not in those of the other YUCCA genes. Moreover, we clearly demonstrate that YUC8ox and YUC9ox overexpressing plants show less damage after spider mite infestation, thereby underlining a role of auxin in plant responses toward biotic stress cues.

scholarly journals Architecture and dynamics of the jasmonic acid gene regulatory network

2016 ◽  
Author(s):  
Richard J. Hickman ◽  
Marcel C. Van Verk ◽  
Anja J.H. Van Dijken ◽  
Marciel Pereira Mendes ◽  
Irene A. Vos ◽  
...  
Keyword(s):  
Transcription Factors ◽  
Jasmonic Acid ◽  
Gene Regulatory Network ◽  
Regulatory Network ◽  
Network Modules ◽  
Time Series Analyses ◽  
Gene Regulatory ◽  
Ja Signaling ◽  
Signaling Components

ABSTRACTThe phytohormone jasmonic acid (JA) is a critical regulator of plant growth and defense. To significantly advance our understanding of the architecture and dynamics of the JA gene regulatory network, we performed high-resolution RNA-Seq time series analyses of methyl JA-treated Arabidopsis thaliana. Computational analysis unraveled in detail the chronology of events that occur during the early and later phases of the JA response. Several transcription factors, including ERF16 and bHLH27, were uncovered as early components of the JA gene regulatory network with a role in pathogen and insect resistance. Moreover, analysis of subnetworks surrounding the JA-induced transcription factors ORA47, RAP2.6L, and ANAC055 provided novel insights into their regulatory role of defined JA network modules. Collectively, our work illuminates the complexity of the JA gene regulatory network, pinpoints to novel regulators, and provides a valuable resource for future studies on the function of JA signaling components in plant defense and development.

scholarly journals The PathLinker app: Connect the dots in protein interaction networks

F1000Research ◽  
2017 ◽  
Vol 6 ◽  
pp. 58 ◽  
Author(s):  
Daniel P. Gil ◽  
Jeffrey N. Law ◽  
T. M. Murali
Keyword(s):  
Transcription Factors ◽  
Signaling Pathways ◽  
Signaling Pathway ◽  
Protein Interaction ◽  
Protein Interaction Network ◽  
Interaction Network ◽  
Protein Interaction Networks ◽  
Interaction Networks ◽  
Graph Theoretic ◽  
Manual Curation

PathLinker is a graph-theoretic algorithm for reconstructing the interactions in a signaling pathway of interest. It efficiently computes multiple short paths within a background protein interaction network from the receptors to transcription factors (TFs) in a pathway. We originally developed PathLinker to complement manual curation of signaling pathways, which is slow and painstaking. The method can be used in general to connect any set of sources to any set of targets in an interaction network. The app presented here makes the PathLinker functionality available to Cytoscape users. We present an example where we used PathLinker to compute and analyze the network of interactions connecting proteins that are perturbed by the drug lovastatin.

scholarly journals Novel Crosstalks between Circadian Clock and Jasmonic Acid Pathway Finely Coordinate the Tradeoff among Plant Growth, Senescence and Defense

2019 ◽  
Vol 20 (21) ◽  
pp. 5254 ◽  
Author(s):  
Yuanyuan Zhang ◽  
Cunpei Bo ◽  
Lei Wang
Keyword(s):  
Plant Growth ◽  
Jasmonic Acid ◽  
Circadian Clock ◽  
Higher Plants ◽  
Plant Fitness ◽  
The Novel ◽  
Key Factor ◽  
Acid Pathway ◽  
Ja Signaling ◽  
Herbivory Resistance

Circadian clock not only functions as a cellular time-keeping mechanism, but also acts as a master regulator to coordinate the tradeoff between plant growth and defense in higher plants by timing a few kinds of phytohormone biosynthesis and signaling, including jasmonic acid (JA). Notably, circadian clock and JA pathway have recently been shown to intertwine with each other to ensure and optimize the plant fitness in an ever-changing environment. It has clearly demonstrated that there are multiple crosstalk pathways between circadian clock and JA at both transcriptional and post-transcriptional levels. In this scenario, circadian clock temporally modulates JA-mediated plant development events, herbivory resistance and susceptibility to pathogen. By contrast, the JA signaling regulates clock activity in a feedback manner. In this review, we summarized the cross networks between circadian clock and JA pathway at both transcriptional and post-transcriptional levels. We proposed that the novel crosstalks between circadian clock and JA pathway not only benefit for the understanding the JA-associated circadian outputs including leaf senescence, biotic, and abiotic defenses, but also put timing as a new key factor to investigate JA pathway in the future.

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