scholarly journals Functional Genomics Differentiate Inherent and Environmentally Influenced Traits in Dinoflagellate and Diatom Communities

2020 ◽  
Vol 8 (4) ◽  
pp. 567 ◽  
Author(s):  
Stephanie Elferink ◽  
Uwe John ◽  
Stefan Neuhaus ◽  
Sylke Wohlrab
Keyword(s):  
Signal Transduction ◽  
Functional Traits ◽  
Species Interactions ◽  
Marine Ecosystem ◽  
Biotic Interactions ◽  
Sulfur Cycle ◽  
Functional Responses ◽  
Physiological Importance ◽  
Metabolic Interactions ◽  
Lysine Degradation

Dinoflagellates and diatoms are among the most prominent microeukaryotic plankton groups, and they have evolved different functional traits reflecting their roles within ecosystems. However, links between their metabolic processes and functional traits within different environmental contexts warrant further study. The functional biodiversity of dinoflagellates and diatoms was accessed with metatranscriptomics using Pfam protein domains as proxies for functional processes. Despite the overall geographic similarity of functional responses, abiotic (i.e., temperature and salinity; ~800 Pfam domains) and biotic (i.e., taxonomic group; ~1500 Pfam domains) factors influencing particular functional responses were identified. Salinity and temperature were identified as the main drivers of community composition. Higher temperatures were associated with an increase of Pfam domains involved in energy metabolism and a decrease of processes associated with translation and the sulfur cycle. Salinity changes were correlated with the biosynthesis of secondary metabolites (e.g., terpenoids and polyketides) and signal transduction processes, indicating an overall strong effect on the biota. The abundance of dinoflagellates was positively correlated with nitrogen metabolism, vesicular transport and signal transduction, highlighting their link to biotic interactions (more so than diatoms) and suggesting the central role of species interactions in the evolution of dinoflagellates. Diatoms were associated with metabolites (e.g., isoprenoids and carotenoids), as well as lysine degradation, which highlights their ecological role as important primary producers and indicates the physiological importance of these metabolic pathways for diatoms in their natural environment. These approaches and gathered information will support ecological questions concerning the marine ecosystem state and metabolic interactions in the marine environment.

scholarly journals Functional traits shape small mammal-helminth network: patterns and processes in species interactions

Parasitology ◽  
2021 ◽  
pp. 1-36
Author(s):  
Thiago dos Santos Cardoso ◽  
Cecilia Siliansky de Andreazzi ◽  
Arnaldo Maldonado Junior ◽  
Rosana Gentile
Keyword(s):  
Functional Traits ◽  
Small Mammal ◽  
Species Interactions ◽  
Patterns And Processes ◽  
Network Patterns

scholarly journals Genotype-Species Interactions in Neighbourhoods of Forest Tree Communities

2007 ◽  
Vol 56 (1-6) ◽  
pp. 101-110 ◽  
Author(s):  
Chr. Wehenkel ◽  
F. Bergmann ◽  
H.-R. Gregorius
Keyword(s):  
Species Interactions ◽  
Species Coexistence ◽  
Biotic Interactions ◽  
Forest Tree ◽  
Target Species ◽  
Species Identity ◽  
Enzymatic Function ◽  
Genotype Frequencies ◽  
Tree Communities ◽  
Large Survey

Abstract Studies on plant communities of various annual species suggest that there are particular biotic interactions among individuals from different species which could be the basis for long-term species coexistence. In the course of a large survey on species-genetic diversity relationships in several forest tree communities, it was found that statistically significant differences exist among isozyme genotype frequencies of conspecific tree groups, which differ only by species identity of their neighbours. Based on a specific measure, the association of the neighbouring species with the genotypes of the target species or that of the genotypes with the neighbouring species was quantified. Since only AAT and HEK of the five analysed enzyme systems differed in their genotype frequencies among several tree groups of the same target species, a potential involvement of their enzymatic function in the observed differences was discussed. The results of this study demonstrate a fine-scale genetic differentiation within single tree species of forest communities, which may be the result of biotic interactions between the genetic structure of a species and the species composition of its community. This observation also suggests the importance of intraspecific genetic variation for interspecific adaptation.

Multiple feedbacks due to biotic interactions across trophic levels can lead to persistent novel conditions that hinder restoration.

2020 ◽  
pp. 402-420
Author(s):  
Stephanie G. Yelenik ◽  
Carla M. D'Antonio ◽  
Evan M. Rehm ◽  
Iain R. Caldwell
Keyword(s):  
Species Interactions ◽  
Native Species ◽  
Biotic Interactions ◽  
Terrestrial Ecosystems ◽  
Trophic Levels ◽  
Native Grasses ◽  
Positive Feedbacks ◽  
Mesic Forest ◽  
Management Context ◽  
Multiple Challenges

Abstract Unlike traditional successional theory, Alternate Stable Equilibrium (ASE) theory posits that more than one community state is possible in a single environment, depending on the order that species arrive. ASE theory is often invoked in management situations where initial stressors have been removed, but native-dominated communities are not returning to degraded areas. Fundamental to this theory is the assumption that equilibria are maintained by positive feedbacks between colonizers and their environment. While ASE has been relatively well studied in aquatic ecosystems, more complex terrestrial systems offer multiple challenges, including species interactions across trophic levels that can lead to multiple feedbacks. Here, we discuss ASE theory as it applies to terrestrial, invaded ecosystems, and detail a case study from Hawai'i that exemplifies how species interactions can favour the persistence of invaders, and how an understanding of interactions and feedbacks can be used to guide management. Our system includes intact native-dominated mesic forest and areas cleared for pasture, planted with non-native grasses, and later planted with a monoculture of a native nitrogen-fixing tree in an effort to restore forests. We discuss interactions between birds, understorey fruiting native species, understorey non-native grasses, soils and bryophytes in separate feedback mechanisms, and explain our efforts to identify which of these feedbacks is most important to address in a management context. Finally, we suggest that using models can help overcome some of the challenges that terrestrial ecosystems pose when studying ASE.

scholarly journals Biotic rescaling reveals importance of species interactions for variation in biodiversity responses to climate change

2020 ◽  
Vol 117 (37) ◽  
pp. 22858-22865 ◽  
Author(s):  
Vigdis Vandvik ◽  
Olav Skarpaas ◽  
Kari Klanderud ◽  
Richard J. Telford ◽  
Aud H. Halbritter ◽  
...  
Keyword(s):  
Climate Change ◽  
Species Interactions ◽  
Community Dynamics ◽  
Biotic Interactions ◽  
Plant Interactions ◽  
Climate Gradients ◽  
Climate Change Responses ◽  
Local Extinctions ◽  
Future Work ◽  
Underlying Processes

Generality in understanding biodiversity responses to climate change has been hampered by substantial variation in the rates and even directions of response to a given change in climate. We propose that such context dependencies can be clarified by rescaling climate gradients in terms of the underlying biological processes, with biotic interactions as a particularly important process. We tested this rescaling approach in a replicated field experiment where entire montane grassland communities were transplanted in the direction of expected temperature and/or precipitation change. In line with earlier work, we found considerable variation across sites in community dynamics in response to climate change. However, these complex context dependencies could be substantially reduced or eliminated by rescaling climate drivers in terms of proxies of plant−plant interactions. Specifically, bryophytes limited colonization by new species into local communities, whereas the cover of those colonists, along with bryophytes, were the primary drivers of local extinctions. These specific interactions are relatively understudied, suggesting important directions for future work in similar systems. More generally, the success of our approach in explaining and simplifying landscape-level variation in climate change responses suggests that developing and testing proxies for relevant underlying processes could be a fruitful direction for building more general models of biodiversity response to climate change.

Ecological Interactions and Macroevolution: A New Field with Old Roots

2020 ◽  
Vol 51 (1) ◽  
pp. 215-243 ◽  
Author(s):  
David H. Hembry ◽  
Marjorie G. Weber
Keyword(s):  
Species Interactions ◽  
Interspecific Interactions ◽  
Biotic Interactions ◽  
Evolutionary Change ◽  
Future Research ◽  
Ecological Interactions ◽  
Open Questions ◽  
Work Done ◽  
Lineage Diversification

Linking interspecific interactions (e.g., mutualism, competition, predation, parasitism) to macroevolution (evolutionary change on deep timescales) is a key goal in biology. The role of species interactions in shaping macroevolutionary trajectories has been studied for centuries and remains a cutting-edge topic of current research. However, despite its deep historical roots, classic and current approaches to this topic are highly diverse. Here, we combine historical and contemporary perspectives on the study of ecological interactions in macroevolution, synthesizing ideas across eras to build a zoomed-out picture of the big questions at the nexus of ecology and macroevolution. We discuss the trajectory of this important and challenging field, dividing research into work done before the 1970s, research between 1970 and 2005, and work done since 2005. We argue that in response to long-standing questions in paleobiology, evidence accumulated to date has demonstrated that biotic interactions (including mutualism) can influence lineage diversification and trait evolution over macroevolutionary timescales, and we outline major open questions for future research in the field.

Habitat use, interspecific competition and phylogenetic history shape the evolution of claw and toepad morphology in Lesser Antillean anoles

2020 ◽  
Vol 129 (3) ◽  
pp. 630-643 ◽  
Author(s):  
Michael L Yuan ◽  
Catherine Jung ◽  
Marvalee H Wake ◽  
Ian J Wang
Keyword(s):  
Interspecific Competition ◽  
Functional Traits ◽  
Functional Morphology ◽  
Biotic Interactions ◽  
Single Species ◽  
Morphometric Data ◽  
Opposite Pattern ◽  
Geometric Morphometric ◽  
Vegetation Use ◽  
Selective Forces

Abstract Ecologically functional traits are the product of several, at times opposing, selective forces. Thus, ecomorphological patterns can be disrupted locally by biotic interactions, such as competition, and may not be consistent across lineages. Here, we studied the evolution of claws and toepads in relationship to macrohabitat (vegetation), use of structural microhabitat (perch height) and congeneric competition for two distantly related Lesser Antillean anole clades: the Anolis bimaculatus and Anolis roquet series. We collected univariate and geometric morphometric data from 254 individuals across 22 species to test the hypotheses that functional morphology should covary with both vegetation and perch height and that the presence of a competitor may disrupt such covariation. Our data showed predictable associations between morphology and macrohabitat on single-species islands but not when a congeneric competitor was present. The outcomes of competition differed between series, however. In the A. bimaculatus series, species with a sympatric congener diverged in claw and toepad traits consistent with functional predictions, whereas A. roquet series anoles showed either no association between habitat and morphology or the opposite pattern. Our results demonstrated that ecomorphological patterns across macrohabitats can be disrupted by competition-driven microhabitat partitioning and that specific morphological responses to similar ecological pressures can vary between lineages.

scholarly journals Spatial Turing-type Pattern Formation in a Model of Signal Transduction Involving Membrane-based Receptors Coupled by G Proteins

2006 ◽  
Vol 2 ◽  
pp. 117693510600200
Author(s):  
Chontita Rattanakul ◽  
Yongwimon Lenbury ◽  
Jonathan Bell ◽  
Varanuj Chatsudthipong ◽  
Wannapong Triampo ◽  
...  
Keyword(s):  
Signal Transduction ◽  
Cell Membrane ◽  
G Proteins ◽  
Surface Membrane ◽  
Reaction Diffusion ◽  
Nonlinear Stability Analysis ◽  
Functional Responses ◽  
Weakly Nonlinear ◽  
Messenger Molecules ◽  
Type Pattern

In this paper, a model of signaling pathways involving G proteins is investigated. The model incorporates reaction-diffusion mechanisms in which various reactants participate inside and on the extra-cellular surface membrane. The messenger molecules may diffuse over the surface of the cell membrane and signal transduction across the cell membrane is mediated by membrane receptor bound proteins which connect the genetically controlled biochemical intra-cellular reactions to the production of the second messenger, leading to desired functional responses. Dynamic and steady-state properties of the model are then investigated through weakly nonlinear stability analysis. Turing-type patterns are shown to form robustly under different delineating conditions on the system parameters. The theoretical predictions are then discussed in the context of some recently reported experimental evidence.

Dimerization quality control ensures neuronal development and survival

Science ◽  
2018 ◽  
Vol 362 (6411) ◽  
pp. eaap8236 ◽  
Author(s):  
Elijah L. Mena ◽  
Rachel A. S. Kjolby ◽  
Robert A. Saxton ◽  
Achim Werner ◽  
Brandon G. Lew ◽  
...  
Keyword(s):  
Signal Transduction ◽  
Quality Control ◽  
Complex Formation ◽  
Neural Crest ◽  
Neuronal Development ◽  
Coiled Coils ◽  
Leucine Zippers ◽  
E3 Ligases ◽  
Physiological Importance ◽  
Control Complex

Aberrant complex formation by recurrent interaction modules, such as BTB domains, leucine zippers, or coiled coils, can disrupt signal transduction, yet whether cells detect and eliminate complexes of irregular composition is unknown. By searching for regulators of the BTB family, we discovered a quality control pathway that ensures functional dimerization [dimerization quality control (DQC)]. Key to this network is the E3 ligase SCFFBXL17, which selectively binds and ubiquitylates BTB dimers of aberrant composition to trigger their clearance by proteasomal degradation. Underscoring the physiological importance of DQC, SCFFBXL17 is required for the differentiation, function, and survival of neural crest and neuronal cells. We conclude that metazoan organisms actively monitor BTB dimerization, and we predict that distinct E3 ligases similarly control complex formation by other recurrent domains.

scholarly journals The Coupled Influence of Thermal Physiology and Biotic Interactions on the Distribution and Density of Ant Species along an Elevational Gradient

Diversity ◽  
2020 ◽  
Vol 12 (12) ◽  
pp. 456
Author(s):  
Lacy D. Chick ◽  
Jean-Philippe Lessard ◽  
Robert R. Dunn ◽  
Nathan J. Sanders
Keyword(s):  
Observational Data ◽  
Species Interactions ◽  
Phylogenetic Signal ◽  
Environmental Filtering ◽  
Null Model ◽  
Biotic Interactions ◽  
Elevational Gradient ◽  
High Elevation ◽  
Elevational Range ◽  
Stressful Environments

A fundamental tenet of biogeography is that abiotic and biotic factors interact to shape the distributions of species and the organization of communities, with interactions being more important in benign environments, and environmental filtering more important in stressful environments. This pattern is often inferred using large databases or phylogenetic signal, but physiological mechanisms underlying such patterns are rarely examined. We focused on 18 ant species at 29 sites along an extensive elevational gradient, coupling experimental data on critical thermal limits, null model analyses, and observational data of density and abundance to elucidate factors governing species’ elevational range limits. Thermal tolerance data showed that environmental conditions were likely to be more important in colder, more stressful environments, where physiology was the most important constraint on the distribution and density of ant species. Conversely, the evidence for species interactions was strongest in warmer, more benign conditions, as indicated by our observational data and null model analyses. Our results provide a strong test that biotic interactions drive the distributions and density of species in warm climates, but that environmental filtering predominates at colder, high-elevation sites. Such a pattern suggests that the responses of species to climate change are likely to be context-dependent and more specifically, geographically-dependent.

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