scholarly journals A Novel Marine Pathogen Isolated from Wild Cunners (Tautogolabrus adspersus): Comparative Genomics and Transcriptome Profiling of Pseudomonas sp. Strain J380

2021 ◽  
Vol 9 (4) ◽  
pp. 812
Author(s):  
Navaneethaiyer Umasuthan ◽  
Katherinne Valderrama ◽  
Ignacio Vasquez ◽  
Cristopher Segovia ◽  
Ahmed Hossain ◽  
...  
Keyword(s):  
Atlantic Salmon ◽  
Iron Homeostasis ◽  
Gc Content ◽  
Transcriptome Profiling ◽  
Opportunistic Pathogen ◽  
Redox Balance ◽  
Iron Limitation ◽  
Pseudomonas Sp ◽  
Tautogolabrus Adspersus ◽  
The North

Cunner (Tautogolabrus adspersus) is a cleaner fish being considered for utilized in the North Atlantic salmon (Salmo salar) aquaculture industry to biocontrol sea lice infestations. However, bacterial diseases due to natural infections in wild cunners have yet to be described. This study reports the isolation of Pseudomonas sp. J380 from infected wild cunners and its phenotypic, genomic, and transcriptomic characterization. This Gram-negative motile rod-shaped bacterium showed a mesophilic (428 °C) and halotolerant growth. Under iron-limited conditions, Pseudomonas sp. J380 produced pyoverdine-type fluorescent siderophore. Koch’s postulates were verified in wild cunners by intraperitoneally (i.p.) injecting Pseudomonas sp. J380 at 4 × 103, 4 × 105, and 4 × 107 colony forming units (CFU)/dose. Host-range and comparative virulence were also investigated in lumpfish and Atlantic salmon i.p. injected with ~106 CFU/dose. Lumpfish were more susceptible compared to cunners, and Atlantic salmon was resistant to Pseudomonas sp. J380 infection. Cunner tissues were heavily colonized by Pseudomonas sp. J380 compared to lumpfish and Atlantic salmon suggesting that it might be an opportunistic pathogen in cunners. The genome of Pseudomonas sp. J380 was 6.26 megabases (Mb) with a guanine-cytosine (GC) content of 59.7%. Biochemical profiles, as well as comparative and phylogenomic analyses, suggested that Pseudomonas sp. J380 belongs to the P. fluorescens species complex. Transcriptome profiling under iron-limited vs. iron-enriched conditions identified 1159 differentially expressed genes (DEGs). Cellular metabolic processes, such as ribosomal and energy production, and protein synthesis, were impeded by iron limitation. In contrast, genes involved in environmental adaptation mechanisms including two-component systems, histidine catabolism, and redox balance were transcriptionally up-regulated. Furthermore, iron limitation triggered the differential expression of genes encoding proteins associated with iron homeostasis. As the first report on a bacterial infection in cunners, the current study provides an overview of a new marine pathogen, Pseudomonas sp. J380.

Present Status of the Salmonids Atlantic Salmon and Sea-Trout in the Dutch Part of the River Rhine

1994 ◽  
Vol 29 (3) ◽  
pp. 37-41 ◽  
Author(s):  
W. G. Cazemier
Keyword(s):  
Atlantic Salmon ◽  
Salmo Trutta ◽  
Natural Populations ◽  
River Rhine ◽  
Sea Trout ◽  
The Past ◽  
The North ◽  
Trout Population ◽  
The North Sea ◽  
Heavy Pollution

In the past, the anadromous salmonids, Atlantic salmon (Salmo salar) and sea-trout (Salmo trutta), have formed natural populations in the river Rhine. From the beginning of the nineteenth century onwards, the greater part of the drainage area of the river has been gradually altered from a more or less rural and agricultural area, into a highly industrialised one with subsequent industrialisation, river-engineering and heavy pollution. These developments are considered to be the major cause for the disappearance of the populations of anadromous salmonid fish in the 1950s. The water quality has recovered significantly during the past 25 years. From about 1975 onwards, this process gave rise to a recovery of the anadromous trout population. Results of recent studies of the sea-trout migration pattern are presented. They reveal that nowadays these salmonids can complete their up- and downstream migrations from the North Sea to places, situated at hundreds of kilometres upward the river and vica versa. The numbers of recorded Atlantic salmon and catch locations in inland waters are presented. They show a significant increase since 1989. These phenomena can be understood as promising signs of the recovery of the Rhine aquatic ecosystem.

scholarly journals Tailoring a Global Iron Regulon to a Uropathogen

mBio ◽  
2020 ◽  
Vol 11 (2) ◽  
Author(s):  
Rajdeep Banerjee ◽  
Erin Weisenhorn ◽  
Kevin J. Schwartz ◽  
Kevin S. Myers ◽  
Jeremy D. Glasner ◽  
...  
Keyword(s):  
Amino Acids ◽  
Urinary Tract ◽  
Amino Acid ◽  
Regulatory Network ◽  
Iron Homeostasis ◽  
Iron Limitation ◽  
Content Type ◽  
E Coli ◽  
General Stress ◽  
K 12

ABSTRACT Pathogenicity islands and plasmids bear genes for pathogenesis of various Escherichia coli pathotypes. Although there is a basic understanding of the contribution of these virulence factors to disease, less is known about variation in regulatory networks in determining disease phenotypes. Here, we dissected a regulatory network directed by the conserved iron homeostasis regulator, ferric uptake regulator (Fur), in uropathogenic E. coli (UPEC) strain CFT073. Comparing anaerobic genome-scale Fur DNA binding with Fur-dependent transcript expression and protein levels of the uropathogen to that of commensal E. coli K-12 strain MG1655 showed that the Fur regulon of the core genome is conserved but also includes genes within the pathogenicity/genetic islands. Unexpectedly, regulons indicative of amino acid limitation and the general stress response were also indirectly activated in the uropathogen fur mutant, suggesting that induction of the Fur regulon increases amino acid demand. Using RpoS levels as a proxy, addition of amino acids mitigated the stress. In addition, iron chelation increased RpoS to the same levels as in the fur mutant. The increased amino acid demand of the fur mutant or iron chelated cells was exacerbated by aerobic conditions, which could be partly explained by the O2-dependent synthesis of the siderophore aerobactin, encoded by an operon within a pathogenicity island. Taken together, these data suggest that in the iron-poor environment of the urinary tract, amino acid availability could play a role in the proliferation of this uropathogen, particularly if there is sufficient O2 to produce aerobactin. IMPORTANCE Host iron restriction is a common mechanism for limiting the growth of pathogens. We compared the regulatory network controlled by Fur in uropathogenic E. coli (UPEC) to that of nonpathogenic E. coli K-12 to uncover strategies that pathogenic bacteria use to overcome iron limitation. Although iron homeostasis functions were regulated by Fur in the uropathogen as expected, a surprising finding was the activation of the stringent and general stress responses in the uropathogen fur mutant, which was rescued by amino acid addition. This coordinated global response could be important in controlling growth and survival under nutrient-limiting conditions and during transitions from the nutrient-rich environment of the lower gastrointestinal (GI) tract to the more restrictive environment of the urinary tract. The coupling of the response of iron limitation to increased demand for amino acids could be a critical attribute that sets UPEC apart from other E. coli pathotypes.

Transcriptome Profiling of Long Non-coding RNAs During the Atlantic Salmon Smoltification Process

2021 ◽  
Vol 23 (2) ◽  
pp. 308-320
Author(s):  
Valentina Valenzuela-Muñoz ◽  
Juan Antonio Váldes ◽  
Cristian Gallardo-Escárate
Keyword(s):  
Atlantic Salmon ◽  
Transcriptome Profiling ◽  
Non Coding Rnas

scholarly journals The early marine distribution of Atlantic salmon in the North‐east Atlantic: A genetically informed stock‐specific synthesis

2021 ◽  
Author(s):  
John Gilbey ◽  
Kjell Rong Utne ◽  
Vidar Wennevik ◽  
Alexander Christian Beck ◽  
Kyrre Kausrud ◽  
...  
Keyword(s):  
Atlantic Salmon ◽  
East Atlantic ◽  
North East ◽  
The North ◽  
Specific Synthesis

Transcriptome profiling the gills of amoebic gill disease (AGD)-affected Atlantic salmon (Salmo salarL.): a role for tumor suppressor p53 in AGD pathogenesis?

2006 ◽  
Vol 26 (1) ◽  
pp. 15-34 ◽  
Author(s):  
Richard N. Morrison ◽  
Glenn A. Cooper ◽  
Ben F. Koop ◽  
Matthew L. Rise ◽  
Andrew R. Bridle ◽  
...  
Keyword(s):  
Tumor Suppressor ◽  
Atlantic Salmon ◽  
Gill Tissue ◽  
Transcriptome Profiling ◽  
Global Gene Expression ◽  
Nuclear Antigen ◽  
Independent Experiment ◽  
Gill Disease ◽  
P53 Tumor Suppressor Protein ◽  
Microarray Analyses

Neoparamoeba spp. are amphizoic amoebae with the capacity to colonize the gills of some marine fish, causing AGD. Here, the gill tissue transcriptome response of Atlantic salmon ( Salmo salar L.) to AGD is described. Tanks housing Atlantic salmon were inoculated with Neoparamoeba spp. and fish sampled at time points up to 8 days postinoculation (pi.). Gill tissues were taken from AGD-affected fish, and a DNA microarray was used to compare global gene expression against tissues from AGD-unaffected fish. A total of 206 genes, representing 190 unique transcripts, were reproducibly identified as up- or downregulated in response to Neoparamoeba spp. infection. Informative transcripts having GO biological process identifiers were grouped according to function. Although a number of genes were placed into each category, no distinct patterns were observed. One Atlantic salmon cDNA that was upregulated in infected gill relative to noninfected gill at 114 and 189 h pi. showed significant identity with the Xenopus, mouse, and human anterior gradient-2 (AG-2) homologs. Two Atlantic salmon AG-2 mRNA transcripts, designated asAG-2/1 and asAG-2/2, were cloned, sequenced, and shown to be predominantly expressed in the gill, intestine, and brain of a healthy fish. In AGD-affected fish, differential asAG-2 expression was confirmed in samples used for microarray analyses as well as in AGD-affected gill tissue taken from fish in an independent experiment. The asAG-2 upregulation was restricted to AGD lesions relative to unaffected tissue from the same gill arch, while p53 tumor suppressor protein mRNA was concurrently downregulated in AGD lesions. Differential expression of p53-regulated transcripts, proliferating cell nuclear antigen and growth arrest and DNA damage-inducible gene-45β (GADD45β) in AGD lesions, suggests a role for p53 in AGD pathogenesis. Thus AGD may represent a novel model for comparative analysis of p53 and p53-regulated pathways.

Long-term changes in migration timing of adult Atlantic salmon (Salmo salar) at the southern edge of the species distribution

2004 ◽  
Vol 61 (12) ◽  
pp. 2392-2400 ◽  
Author(s):  
Francis Juanes ◽  
Stephen Gephard ◽  
Kenneth F Beland
Keyword(s):  
Atlantic Salmon ◽  
Salmo Salar ◽  
Global Climate ◽  
Life History Trait ◽  
Connecticut River ◽  
Migration Timing ◽  
Atlantic Salmon Salmo Salar ◽  
The North ◽  
Long Term Changes

The Connecticut River historically represented the southernmost extent of the North American range of Atlantic salmon (Salmo salar), but the native population was extirpated 200 years ago by dam construction. An extensive restoration effort has relied upon stock transfers from more northerly rivers, especially the Penobscot River (Maine). Recent work has shown differences in age structure between donor and derivative populations. Here we focus on a related life-history trait, the timing of the adult migration. We examined 23 years of migration timing data collected at two capture locations in the Connecticut River drainage. We found that both dates of first capture and median capture dates have shifted significantly earlier by about 0.5 days·year–1. To conclude whether this is a consequence of local adaptation or a coast-wide effect, we also quantified changes in migration timing of more northerly stocks (in Maine and Canada). We found that the changes in migration timing were not unique to the Connecticut River stock and instead observed coherent patterns in the shift towards earlier peak migration dates across systems. These consistent shifts are correlated with long-term changes in temperature and flow and may represent a response to global climate change.

scholarly journals Dietary inclusion of Antarctic krill meal during the finishing feed period improves health and fillet quality of Atlantic salmon (Salmo salar L.)

2020 ◽  
Vol 124 (4) ◽  
pp. 418-431
Author(s):  
Turid Mørkøre ◽  
Helena M. Moreno ◽  
Javier Borderías ◽  
Thomas Larsson ◽  
Hege Hellberg ◽  
...  
Keyword(s):  
Skeletal Muscle ◽  
Atlantic Salmon ◽  
Antarctic Krill ◽  
Transcriptome Profiling ◽  
Gut Health ◽  
Muscle Properties ◽  
Final Body Weight ◽  
Immune Genes ◽  
Genes Encoding ◽  
Fourier Transform Ir

AbstractThere is an urgent need to find alternative feed resources that can further substitute fishmeal in Atlantic salmon diets without compromising health and food quality, in particular during the finishing feeding period when the feed demand is highest and flesh quality effects are most significant. This study investigates efficacy of substituting a isoprotein (35 %) and isolipid (35 %) low fishmeal diet (FM, 15 %) with Antarctic krill meal (KM, 12 %) during 3 months with growing finishing 2·3 kg salmon (quadruplicate sea cages/diet). Final body weight (3·9 (se 0·04) kg) was similar in the dietary groups, but the KM group had more voluminous body shape, leaner hearts and improved fillet integrity, firmness and colour. Ectopic epithelial cells and focal Ca deposits in intestine were only detected in the FM group. Transcriptome profiling by microarray of livers showed dietary effects on several immune genes, and a panel of structural genes were up-regulated in the KM group, including cadherin and connexin. Up-regulation of genes encoding myosin heavy chain proteins was the main finding in skeletal muscle. Morphology examination by scanning electron microscopy and secondary structure by Fourier transform IR spectroscopy revealed more ordered and stable collagen architecture of the KM group. NEFA composition of skeletal muscle indicated altered metabolism of n-3, n-6 and SFA of the KM group. The results demonstrated that improved health and meat quality in Atlantic salmon fed krill meal were associated with up-regulation of immune genes, proteins defining muscle properties and genes involved in cell contacts and adhesion, altered fatty acid metabolism and fat deposition, and improved gut health and collagen structure.

scholarly journals Stable isotopes suggest the location of marine feeding grounds of South European Atlantic salmon in Greenland

2020 ◽  
Vol 77 (2) ◽  
pp. 593-603 ◽  
Author(s):  
Ana Almodóvar ◽  
Graciela G Nicola ◽  
Daniel Ayllón ◽  
Clive N Trueman ◽  
Ian Davidson ◽  
...  
Keyword(s):  
Atlantic Salmon ◽  
Population Decline ◽  
Migration Route ◽  
North Atlantic Current ◽  
Migration Routes ◽  
Δ13c And Δ15n ◽  
Δ13c Values ◽  
The North ◽  
Salmon Population ◽  
And Migration

Abstract Historical data on the oceanic distribution and migration routes of southernmost Atlantic salmon Salmo salar populations from Europe are almost non-existent, as no rigorous tagging initiatives have been conducted. Here, we used stable isotope data (δ13C and δ15N) of historic scale collections to identify the potential marine feeding areas of the largest salmon population in the Iberian Peninsula. Data were compared with published datasets from Northern Ireland, Wales, south England, and northeast UK coast, which correspond to series between 15- and 33-year long within the time period from 1958 to 2009. Temporal covariation in sea surface temperature, primary productivity, and δ13C values suggests that feeding areas of Iberian salmon are located around Greenland, both in the Labrador and the Irminger seas. Furthermore, δ13C values of Atlantic salmon from Canadian rivers reported in the literature are similar to those found in individuals from Spanish rivers. Our results suggest that Iberian salmon follow a westerly migration route towards Greenland instead of following the easterly branch of the North Atlantic current into the Norwegian Sea. Characterization of feeding patterns and migration routes might help to understand the causes of ongoing population decline and establish targeted conservation programmes for threatened Iberian salmon.

scholarly journals Exploring the Use of Dimethyl Fumarate as Microglia Modulator for Neurodegenerative Diseases Treatment

Antioxidants ◽  
2020 ◽  
Vol 9 (8) ◽  
pp. 700
Author(s):  
Maria Rosito ◽  
Claudia Testi ◽  
Giacomo Parisi ◽  
Barbara Cortese ◽  
Paola Baiocco ◽  
...  
Keyword(s):  
Neurodegenerative Diseases ◽  
Iron Homeostasis ◽  
Brain Injuries ◽  
Neuroprotective Effect ◽  
Redox Homeostasis ◽  
Dimethyl Fumarate ◽  
Redox Balance ◽  
Fumaric Acid Ester ◽  
The Central Nervous System

The maintenance of redox homeostasis in the brain is critical for the prevention of the development of neurodegenerative diseases. Drugs acting on brain redox balance can be promising for the treatment of neurodegeneration. For more than four decades, dimethyl fumarate (DMF) and other derivatives of fumaric acid ester compounds have been shown to mitigate a number of pathological mechanisms associated with psoriasis and relapsing forms of multiple sclerosis (MS). Recently, DMF has been shown to exert a neuroprotective effect on the central nervous system (CNS), possibly through the modulation of microglia detrimental actions, observed also in multiple brain injuries. In addition to the hypothesis that DMF is linked to the activation of NRF2 and NF-kB transcription factors, the neuroprotective action of DMF may be mediated by the activation of the glutathione (GSH) antioxidant pathway and the regulation of brain iron homeostasis. This review will focus on the role of DMF as an antioxidant modulator in microglia processes and on its mechanisms of action in the modulation of different pathways to attenuate neurodegenerative disease progression.

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