scholarly journals Development of SNP Markers for White Immature Fruit Skin Color in Cucumber (Cucumis sativus L.) Using QTL-seq and Marker Analyses

Plants ◽  
2021 ◽  
Vol 10 (11) ◽  
pp. 2341
Author(s):  
D. S. Kishor ◽  
Hemasundar Alavilli ◽  
Sang-Choon Lee ◽  
Jeong-Gu Kim ◽  
Kihwan Song
Keyword(s):  
Skin Color ◽  
Genetic Basis ◽  
Recessive Gene ◽  
Genomic Region ◽  
Chromosome 3 ◽  
Missense Mutations ◽  
Cucumis Sativus L ◽  
Immature Fruit ◽  
Fruit Skin ◽  
Light Green

Despite various efforts in identifying the genes governing the white immature fruit skin color in cucumber, the genetic basis of the white immature fruit skin color is not well known. In the present study, genetic analysis showed that a recessive gene confers the white immature fruit skin-color phenotype over the light-green color of a Korean slicer cucumber. High-throughput QTL-seq combined with bulked segregation analysis of two pools with the extreme phenotypes (white and light-green fruit skin color) in an F2 population identified two significant genomic regions harboring QTLs for white fruit skin color within the genomic region between 34.1 and 41.67 Mb on chromosome 3, and the genomic region between 12.2 and 12.7 Mb on chromosome 5. Further, nonsynonymous SNPs were identified with a significance of p < 0.05 within the QTL regions, resulting in eight homozygous variants within the QTL region on chromosome 3. SNP marker analysis uncovered the novel missense mutations in Chr3CG52930 and Chr3CG53640 genes and showed consistent results with the phenotype of light-green and white fruit skin-colored F2 plants. These two genes were located 0.5 Mb apart on chromosome 3, which are considered strong candidate genes. Altogether, this study laid a solid foundation for understanding the genetic basis and marker-assisted breeding of immature fruit skin color in cucumber.

scholarly journals Inheritance of warty fruit texture and fruit color in bottle gourd [Lagenaria siceraria (Molina) Standl.]

Genetika ◽  
2013 ◽  
Vol 45 (2) ◽  
pp. 427-432 ◽  
Author(s):  
Emina Mladenovic ◽  
Janos Berenji ◽  
Ksenija Hiel ◽  
Marija Kraljevic-Balalic ◽  
Vladislav Ognjanov ◽  
...  
Keyword(s):  
Skin Color ◽  
Fruit Color ◽  
Bottle Gourd ◽  
Lagenaria Siceraria ◽  
Fruit Type ◽  
Fruit Skin ◽  
Dark Green ◽  
F2 Generation ◽  
Light Green ◽  
Mode Of Inheritance

Bottle gourd [Lagenaria siceraria (Molina) Standl.] is one of the most interesting species in the plant kingdom, due to the diversity of fruit shapes, sizes and ways of use. Warty genotypes are rare compared to non warty genotypes. Considering unusual external appearance of warty fruits, we focused our research on the investigation of its inheritance patterns. By crossing different bottle gourd phenotypes, we studied the mode of inheritance and identified and verified genes responsible for the fruit skin color and warty phenotype segregation. Two parental lines, LAG 70 (with warty fruit of light green color) and LAG 71 (smooth fruit, variegated), F1, F2 and backcrosses populations along with both parents were evaluated. Genetic analysis indicated that warty fruit type is a result of monogenic inheritance, whereby the warty fruit type is dominant (Wt) trait over to the non-warty fruit type (wt). The mode of inheritance of fruit color was controlled by recessive epistasis, with a ratio of 9 variegated (A-, B-), 3 dark green colored (aaB-) and 4 light green colored (aabb) fruits in the F2 generation.

scholarly journals Low temperature seed germination of cucumber: genetic basis of the tolerance trait

2013 ◽  
Vol 21 (2) ◽  
pp. 125-130 ◽  
Author(s):  
Urszula Kłosińska ◽  
Elżbieta U. Kozik ◽  
Marcin Nowicki ◽  
Todd C. Wehner
Keyword(s):  
Low Temperature ◽  
Genetic Basis ◽  
Recessive Gene ◽  
Temperature Tolerance ◽  
Gene Model ◽  
Cucumis Sativus L ◽  
F2 Population ◽  
Low Temperature Tolerance ◽  
Germination Ability ◽  
Cold Tolerant

ABSTRACT Cucumber (Cucumis sativus L.) germinates in an optimal temperature ranging from 24 to 28 °C. In order to develop cultivars with low temperature germination ability, knowledge regarding its genetic basis is needed. In our earlier study, we identified the accession PI 390953 as chilling tolerant and a good cold germinator. The objective of our present study was to compare cold germinability of cold tolerant breeding line B 5669 with PI 390953, and to measure the inheritance of this trait. At 13 °C, both tested cultigens (B 5669, PI 390953) showed the highest germinability and we found no significant differences between them regarding the rate of germination, days to germination (DTG), or germination index (GI). We also observed differences in the germination ability at 13 °C among seven hybrid populations of cucumber, derived from the cross between good cold germinator B 5669 (P1) and B 6115 (P2) lacking cold-germination ability. The fastest low temperature germination and the highest low temperature germination percentages were observed in B 5669 (P1) with germination of 78 and 100% on the 6th and 10th day of the test, respectively. In addition, the cultigen B 5669 exhibited the fastest germination, reaching on average of DTG = 5.7. B 6115 (P2) and BC1P2 proved unable to germinate at 13 °C even within 21 days. The seed germinability of F2 population fits a three-recessive gene model. Cucumber cultigens B 5669, PI 390953, and PI 246903 showed low temperature tolerance, but of them B 5669 may become the most desirable to breeders since it exhibits cold germinability combined with good fruit quality traits.

scholarly journals Fine Mapping and Candidate Gene Prediction for White Immature Fruit Skin in Cucumber (Cucumis sativus L.)

2018 ◽  
Vol 19 (5) ◽  
pp. 1493 ◽  
Author(s):  
Hong-Yu Tang ◽  
Xu Dong ◽  
Jian-Ke Wang ◽  
Jun-Hui Xia ◽  
Fei Xie ◽  
...  
Keyword(s):  
Candidate Gene ◽  
Cucumis Sativus ◽  
Fine Mapping ◽  
Gene Prediction ◽  
Cucumis Sativus L ◽  
Immature Fruit ◽  
Fruit Skin

scholarly journals Genome-wide Association Analysis Reveals a Novel QTL CsFS1 for Fruit Skin Color in Cucumber

2021 ◽  
Author(s):  
Hongyu Huang ◽  
Qinqin Yang ◽  
Lidong Zhang ◽  
Weiliang Kong ◽  
Huizhe Wang ◽  
...  
Keyword(s):  
Skin Color ◽  
Consumer Preference ◽  
Inbred Lines ◽  
Green Fruit ◽  
Genome Wide ◽  
Gata Transcription Factor ◽  
Fruit Skin ◽  
Dark Green ◽  
Light Green ◽  
Novel Allele

Abstract Fruit skin color is a crucial external trait that affects consumer preference in cucumber. In this study, an F2 population was constructed from a cross between the inbred lines G35 (with light-green fruit skin) and Q51 (with dark-green fruit skin) and used to investigate the inheritance patterns of fruit skin color in cucumber. Genetic analysis showed that dark-green fruit skin was dominant to light-green skin. A major QTL, Fruit skin 1 (CsFS1), was identified between 36.62 Mb and 39.77 Mb on chromosome 3 by BSA-seq and GWAS. We further narrowed down the CsFS1 locus to a 94-kb interval containing 15 candidate genes in three F2 recombinant individuals with light-green skin color and one BC4F2 recombinant individual with dark-green skin color. Among these genes, Csa3G912920, which encodes a GATA transcription factor, was expressed at a higher level in the pericarp of the NIL-1334 line (with light-green fruit skin) than in that of the NIL-1325 line (with dark-green fruit skin). This study provides a novel allele for the improvement of fruit skin color in cucumber breeding.

Anti-Myelin Oligodendrocyte Glycoprotein Encephalomyelitis and Extensive Longitudinal Transverse Myelitis Associated with Compound Heterozygous NLRP3 Missense Mutations in a Young Child

2020 ◽  
Author(s):  
Deirdre O'Sullivan ◽  
Michael Moore ◽  
Susan Byrne ◽  
Andreas O. Reiff ◽  
Susanna Felsenstein
Keyword(s):  
Young Child ◽  
Genetic Basis ◽  
Transverse Myelitis ◽  
Acute Disseminated Encephalomyelitis ◽  
Myelin Oligodendrocyte Glycoprotein ◽  
Compound Heterozygous ◽  
Missense Mutations ◽  
Childhood Onset

AbstractAcute disseminated encephalomyelitis in association with extensive longitudinal transverse myelitis is reported in a young child with positive anti-myelin oligodendrocyte glycoprotein (MOG) antibody with heterozygous NLRP3 missense mutations; p.(Arg488Lys) and p.(Ser159Ile). This case may well present an exceptional coincidence, but may describe a yet unrecognized feature of the spectrum of childhood onset cryopyrinopathies that contribute to the understanding of the genetic basis for anti-MOG antibody positive encephalomyelitis. Based on this observation, a larger scale study investigating the role of NLRP3 and other inflammasomes in this entity would provide important pathophysiological insights and potentially novel avenues for treatment.

scholarly journals A mutation in LacDWARF1 results in a GA-deficient dwarf phenotype in sponge gourd (Luffa acutangula)

2021 ◽  
Author(s):  
Gangjun Zhao ◽  
Caixia Luo ◽  
Jianning Luo ◽  
Junxing Li ◽  
Hao Gong ◽  
...  
Keyword(s):  
Gene Annotation ◽  
Recessive Gene ◽  
Genomic Region ◽  
Dwarf Mutant ◽  
Rna Seq ◽  
Dwarf Phenotype ◽  
Sponge Gourd ◽  
Response To Stress ◽  
Luffa Acutangula ◽  
Generation Sequencing

Abstract Key message A dwarfism gene LacDWARF1 was mapped by combined BSA-Seq and comparative genomics analyses to a 65.4 kb physical genomic region on chromosome 05. Abstract Dwarf architecture is one of the most important traits utilized in Cucurbitaceae breeding because it saves labor and increases the harvest index. To our knowledge, there has been no prior research about dwarfism in the sponge gourd. This study reports the first dwarf mutant WJ209 with a decrease in cell size and internodes. A genetic analysis revealed that the mutant phenotype was controlled by a single recessive gene, which is designated Lacdwarf1 (Lacd1). Combined with bulked segregate analysis and next-generation sequencing, we quickly mapped a 65.4 kb region on chromosome 5 using F2 segregation population with InDel and SNP polymorphism markers. Gene annotation revealed that Lac05g019500 encodes a gibberellin 3β-hydroxylase (GA3ox) that functions as the most likely candidate gene for Lacd1. DNA sequence analysis showed that there is an approximately 4 kb insertion in the first intron of Lac05g019500 in WJ209. Lac05g019500 is transcribed incorrectly in the dwarf mutant owing to the presence of the insertion. Moreover, the bioactive GAs decreased significantly in WJ209, and the dwarf phenotype could be restored by exogenous GA3 treatment, indicating that WJ209 is a GA-deficient mutant. All these results support the conclusion that Lac05g019500 is the Lacd1 gene. In addition, RNA-Seq revealed that many genes, including those related to plant hormones, cellular process, cell wall, membrane and response to stress, were significantly altered in WJ209 compared with the wild type. This study will aid in the use of molecular marker-assisted breeding in the dwarf sponge gourd.

scholarly journals THE ROLE OF MINERAL NUTRITION ON YIELDS AND FRUIT QUALITY IN GRAPEVINE, PEAR AND APPLE

2015 ◽  
Vol 37 (4) ◽  
pp. 1089-1104 ◽  
Author(s):  
GUSTAVO BRUNETTO ◽  
GEORGE WELLINGTON BASTOS DE MELO ◽  
MORENO TOSELLI ◽  
MAURIZIO QUARTIERI ◽  
MASSIMO TAGLIAVINI
Keyword(s):  
Fruit Quality ◽  
Skin Color ◽  
N Uptake ◽  
Maximum Yield ◽  
Grape Juice ◽  
Fruit Trees ◽  
N Availability ◽  
Wine Quality ◽  
Fruit Skin ◽  
Soluble Solid

ABSTRACT Fertilization of temperate fruit trees, such as grapevine ( Vitis spp.), apple ( Malus domestica), and pear ( Pyrus communis) is an important tool to achive maximum yield and fruit quality. Fertilizers are provided when soil fertility does not allow trees to express their genetic potential, and time and rate of application should be scheduled to promote fruit quality. Grapevine berries, must and wine quality are affected principally by N, that regulate the synthesis of some important compounds, such as anthocyanins, which are responsible for coloring of the must and the wine. Fermenation of the must may stop in grapes with low concentration of N because N is requested in high amount by yeasts. An N excess may increase the pulp to peel ratio, diluting the concentration of anthocyanins and promoting the migration of anthocyanins from berries to the growing plant organs; a decrease of grape juice soluble solid concentration is also expected because of an increase in vegetative growth. Potassium is also important for wine quality contributing to adequate berry maturation, concentration of sugars, synthesis of phenols and the regulation of pH and acidity. In apple and pear, Ca and K are important for fruit quality and storage. Potassium is the most important component of fruit, however, any excess should be avoided and an adequate K:Ca balance should be achieved. Adequate concentration of Ca in the fruit prevents pre- and post-harvest fruit disorders and, at the same time, increases tolerance to pathogens. Although N promotes adequate growth soil N availability should be monitored to avoid excessive N uptake that may decrease fruit skin color and storability.

scholarly journals Genetic mapping and candidate gene identification of BoGL5, a gene essential for cuticular wax biosynthesis in broccoli

BMC Genomics ◽  
2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Fengqing Han ◽  
Jingjing Huang ◽  
Qi Xie ◽  
Yumei Liu ◽  
Zhiyuan Fang ◽  
...  
Keyword(s):  
Abiotic Stresses ◽  
Genetic Basis ◽  
Ectopic Expression ◽  
Recessive Gene ◽  
Cuticular Wax ◽  
Terrestrial Plants ◽  
Cuticular Waxes ◽  
Biotic And Abiotic Stresses ◽  
Defective Mutant ◽  
Interval Sequence

Abstract Background The aerial organs of most terrestrial plants are covered by cuticular waxes, which impart plants a glaucous appearance and play important roles in protecting against various biotic and abiotic stresses. Despite many glossy green (wax-defective) mutants being well characterized in model plants, little is known about the genetic basis of glossy green mutant in broccoli. Results B156 is a spontaneous broccoli mutant showing a glossy green phenotype. Detection by scanning electron microscopy (SEM) and chromatography-mass spectrometry (GC-MS) revealed that B156 is a cuticular wax-defective mutant, lacking waxes mostly longer than C28. Inheritance analysis revealed that this trait was controlled by a single recessive gene, BoGL5. Whole-genome InDel markers were developed, and a segregating F2 population was constructed to map BoGL5. Ultimately, BoGL5 was mapped to a 94.1 kb interval on C01. The BoCER2 gene, which is homologous to the Arabidopsis CER2 gene, was identified as a candidate of BoGL5 from the target interval. Sequence analyses revealed that Bocer2 in B156 harbored a G-to-T SNP mutation at the 485th nucleotide of the CDS, resulting in a W-to-L transition at the 162nd amino acid, a conserved site adjacent to an HXXXD motif of the deduced protein sequence. Expression analysis revealed that BoCER2 was significantly down-regulated in the leaves, stems, and siliques of B156 mutant than that of B3. Last, ectopic expression of BoCER2 in A. thaliana could, whereas Bocer2 could not, rescue the phenotype of cer2 mutant. Conclusions Overall, this study mapped the locus determining glossy phenotype of B156 and proved BoCER2 is functional gene involved in cuticular wax biosynthesis which would promotes the utilization of BoCER2 to enhance plant resistance to biotic and abiotic stresses, and breeding of B. oleracea cultivars with glossy traits.

scholarly journals QTL Mapping of Quality Related Traits in Peanut Using Whole-Genome Resequencing

2021 ◽  
Author(s):  
Ziqi Sun ◽  
Feiyan Qi ◽  
Hua Liu ◽  
Li Qin ◽  
Jing Xu ◽  
...  
Keyword(s):  
Fatty Acids ◽  
Fatty Acid ◽  
Protein Content ◽  
Genomic Region ◽  
High Density ◽  
Whole Genome ◽  
Missense Mutations ◽  
Genome Resequencing ◽  
Phenotypic Effect ◽  
Whole Genome Resequencing

Abstract Background: Oil and protein content, as well as fatty acid composition, are important quality traits in peanut. Elucidating the genetic mechanisms underlying these traits may help researchers to obtain improved cultivars through molecular breeding techniques.Results: Whole-genome resequencing of an RIL population of 318 lines was performed to construct a high-density linkage map and identify QTLs for peanut quality. The map, containing 4561 bin markers, covered a length of 2032.39 cM with an average marker density of 0.45 cM. A total of 109 QTLs for oil content, protein content, and fatty acid compositions were mapped on the 18 peanut chromosomes. The QTL qA05.1 was detected in four different environments and exhibited a major phenotypic effect on the content of oil, proteins, and six fatty acids. The genomic region spanned by qA05.1, corresponding to a physical interval of approximately 1.50 Mb, contains two polymorphic SNPs between two parents that could cause missense mutations. The two SNP sites were employed as KASP markers and validated using lines with extremely high and low oil contents; these sites may be useful in the marker-assisted breeding of peanut varieties with high oil contents.Conclusions: A high-density genetic map with 4561 bin markers was constructed, and a major and pleiotropic QTL located on LG05 was stably detected for oil, protein and fatty acids across four different environments.

Sign in / Sign up

Export Citation Format

Share Document