scholarly journals Beyond Bycatch: The Species Diversity of Tonguesole (Pleuronectiformes: Cynoglossidae) in Coastal Fisheries of the Tanintharyi Region, Southern Myanmar

2021 ◽  
Vol 34 (1) ◽  
Author(s):  
IRIS SEGURA-GARCIA ◽  
SABAI SOE ◽  
NYO-NYO TUN ◽  
STEPHEN BOX
Keyword(s):  
Species Diversity ◽  
Dna Barcoding ◽  
Life Histories ◽  
Dna Barcode ◽  
Common Species ◽  
Small Scale ◽  
New Information ◽  
The Family ◽  
Management Plans ◽  
Species Specific

Flatfishes in the family Cynoglossidae are an important coastal fishery in Myanmar. Due to the overlapping morphologies of multiple tonguesole species, caught both as bycatch from trawl fisheries and targeted specifically by small scale fishers, they are all marketed under a single local name, “khwayshar”. This presents a management challenge given the potential differences in the species-specific life-histories, population dynamics, fishing vulnerability and harvest rates. This study investigated the species diversity of tonguesole landings from coastal communities of the Tanintharyi Region of southern Myanmar. DNA barcoding was used to distinguish potentially 10 different species, of which five were identified to species level and five at the genus level. Unconfirmed genetic identifications were based on external morphology. The poor efficacy of DNA barcoding for tonguesole species identification resulted from the limited DNA barcode reference sequences available for the family Cynoglossidae in public databases. An asymmetric occurrence and relative abundance of the identified species in landing sites where samples were collected suggested that the most common species was Cynoglossus oligolepis (Bleeker, 1855), a new species record for Myanmar, followed by Cynoglossus lingua Hamilton, 1822. The results of the present study provide new information to characterise the tonguesole fishery as a first step in the development of management plans for the coastal fishery in Myanmar.

A DNA barcode examination of the red algal family Dumontiaceae in Canadian waters reveals substantial cryptic species diversity. 1. The foliose Dilsea–Neodilsea complex and WeeksiaThis paper is one of a selection of papers published in the Special Issue on Systematics Research.

Botany ◽  
2008 ◽  
Vol 86 (7) ◽  
pp. 773-789 ◽  
Author(s):  
Gary W. Saunders
Keyword(s):  
Species Diversity ◽  
Dna Barcoding ◽  
Life Histories ◽  
Dna Barcode ◽  
Genetic System ◽  
Marine Macroalgae ◽  
Accurate Identification ◽  
Additional Species ◽  
Large Numbers ◽  
Red Algal

The field of DNA barcoding is working towards generating a genetic system for the quick and accurate identification of eukaryotic species. For the more systematic minded, however, DNA barcoding offers a new approach towards screening and uniting large numbers of biological specimens in genetic groups as a first step towards assigning them to species and genera in an approach best termed “molecular-assisted alpha taxonomy”. This approach is particularly amenable in organisms with simple morphologies, a propensity for convergence, extensive phenotypic plasticity, and life histories with an alternation of heteromorphic generations. It is hard to imagine a group of organisms better defined by all of these traits than the marine macroalgae. In an effort to assess the utility of the DNA barcode (COI-5′) for testing the current concepts of biodiversity of marine macroalgae in Canada, a study to assess species diversity in the red algal family, Dumontiaceae, was initiated. Through this work I confirm the presence in Canadian waters of Dilsea californica (J. Agardh) Kuntze, Dilsea integra (Kjellman) Rosenvinge, and Neodilsea borealis (I.A. Abbott) Lindstrom of the Dilsea–Neodilsea complex, and Weeksia coccinea (Harvey) Lindstrom for the genus Weeksia . However, our work has uncovered two additional species of the former complex, Dilsea lindstromiae Saunders sp. nov. and Dilsea pygmaea (Setchell) Setchell, and an additional species of the latter, Weeksia reticulata Setchell, effectively doubling representation of these foliose dumontiacean genera in Canadian waters.

scholarly journals Staphylinids (Coleoptera, Staphylinidae) of Ukrainian metropolises

2020 ◽  
Vol 28 (1) ◽  
pp. 41-47
Author(s):  
A. V. Puchkov ◽  
V. V. Brygadyrenko ◽  
L. I. Faly ◽  
N. A. Komaromi
Keyword(s):  
Species Diversity ◽  
Species Composition ◽  
Urban Environment ◽  
Common Species ◽  
Diverse Group ◽  
Insect Communities ◽  
Large Cities ◽  
The Family ◽  
Carnivorous Species ◽  
Original Species

During hundreds of years, in large cities man has been forming a specific urban environment with original species composition of insect communities, including the most diverse group of predatory beetles – Staphylinidae family. Kyiv, Kharkiv, Dnipro are the three most populated cities of Ukraine. In the urban cenoses of these cities, over 140 species from 66 genera of Staphylinidae have been recorded. The total of 69 species (43 genera) were recorded in Kyiv, 67 (39 genera) in Dnipro and 66 (37 genera) in Kharkiv. Among them, , eight species in the catalogue of Palearctic staphylinds had not been previously recorded for Ukraine: Arpedium quadrum Grav., Atheta laticeps Thomson, Medon apicalis Kraatz, Ocalea rivularis Müll., Philonthus salinus Kiesenwetter, Quedius invreae Gridelli, Tasgius pedator Grav. and Xantholinus gallicus Coiffait. By number, common species accounted for 29 in Dnipro, 21 in Kyiv and 19 in Kharkiv. In all the metropolises, two species (Staphylinus caesareus Cederhjelm and Drusilla canaliculata (F.)) were identified as eudominants. Dominants and subdominants comprised 18–25 species. Almost two thirds of the fauna of staphylinids of the cities was classified as rare species. The lowest faunistic similarity was seen between the staphylinids of the urban cenoses of Dnipro and those in Kyiv and Kharkiv (15.3% and 17.5%), similarity was higher for Staphylinidae of Kyiv and Kharkiv (36.0%). Similarity by common species of staphylinids for Kyiv and Kharkiv equaled 73.9%, 28.2% for Dnipro and Kyiv and 37.1% for Dnipro and Kharkiv. The article offers a review of species diversity, number and ecological structure (biotopic confinedness, hygrothermal preference) of typical species of staphylinids in different urban cenoses of Kharkiv. Differences in qualitative-quantitative and ecological structures of staphylinids are related to the diversity of the conditions in a particular urban cenoses. The commonest representatives of the family in the metropolises were polytopic mesophilous carnivorous species.

A review of the macrochelid mites of Turkey (Acari: Macrochelidae), with new records and descriptions of three new species

Zootaxa ◽  
2017 ◽  
Vol 4317 (3) ◽  
pp. 559 ◽  
Author(s):  
HASAN HÜSEYİN ÖZBEK
Keyword(s):  
New Species ◽  
Species Diversity ◽  
New Records ◽  
Dorsal Seta ◽  
Dorsal Shield ◽  
New Information ◽  
The Family ◽  
Three New Species ◽  
First Time

This study reviews the family Macrochelidae in Turkey, with new information about species diversity. Nothrholaspis scutivagus sp. nov., Macrocheles niksarensis sp. nov. and Holostaspella bidentata sp. nov. are described as new species from Turkey. Nothrholaspis scutivagus has a characteristic dorsal shield chaetotaxy, and post-genital platelets that are sometimes fused to the ventri-anal shield. Macrocheles niksarensis has 29 pairs of pilose dorsal shield setae and a machete-like cheliceral dorsal seta. The genus Holostaspella is recorded from Turkey for the first time, on the basis of H. bidentata. Macrocheles peniculatus and M. insignitus are reported from Turkey for the first time. Also, Macrholaspis recki and M. evansi are presented here with some notes on the Turkish specimens. 

scholarly journals The application of science to the management of Atlantic salmon (Salmo salar): integration across scales

1998 ◽  
Vol 55 (S1) ◽  
pp. 303-311 ◽  
Author(s):  
John D Armstrong ◽  
James WA Grant ◽  
Harvey L Forsgren ◽  
Kurt D Fausch ◽  
Richard M DeGraaf ◽  
...  
Keyword(s):  
Atlantic Salmon ◽  
Life Histories ◽  
Large Scale ◽  
Scale Effects ◽  
Spatial Scales ◽  
Small Scale ◽  
Spatial And Temporal Scales ◽  
Management Plans ◽  
Broad Scale ◽  
The Way

The need for integration across spatial and temporal scales in applying science to the management of Atlantic salmon is considered. The factors that are currently believed to affect the production of anadromous adult Atlantic salmon (synthesized from recent reviews) are arranged in a hierarchy in which any given process overrides those processes at lower levels. There is not a good correlation between levels in the process hierarchy and levels in hierarchies of scale. This demonstrates the importance of integrating across scales in identifying the optimum foci for targeting management action. It is not possible to generalize on the need for integration across scales within management plans. This is because of the complex ecology of salmon, the broad range of characteristics of the systems of which they are a part, and the fact that both local scale and broad scale management can have broad scale effects. Many uncertainties remain regarding the large-scale components of the ecology of salmon, the way that small-scale mechanisms interact with life histories, and the way that different factors interact to limit production of fish. When more is understood of these processes, it is likely that generalized rules might be developed to predict the management requirements for stream systems. In the meantime, it is essential that there is good integration among managers working at different scales and it is important that management systems operating at all spatial scales include high-calibre expertise to compensate for the present paucity of general rules.

scholarly journals DNA Barcoding of Mullets (Family Mugilidae) from Pakistan Reveals Surprisingly High Number of Unknown Candidate Species

Diversity ◽  
2021 ◽  
Vol 13 (6) ◽  
pp. 232
Author(s):  
Ariba Hasan ◽  
Pirzada Jamal Ahmed Siddiqui ◽  
Shabir Ali Amir ◽  
Jean-Dominique Durand
Keyword(s):  
Species Diversity ◽  
Cryptic Species ◽  
Dna Barcoding ◽  
Dna Barcode ◽  
Morphological Examination ◽  
Operational Taxonomic Units ◽  
Phylogenetic Studies ◽  
Management Measures ◽  
Morphological Criteria ◽  
Candidate Species

The mullets are a widespread group of ecologically and economically important fishes of disputed taxonomy due to their uniform external morphology. Barcoding and phylogenetic studies from various locations around the world largely highlighted the species diversity underestimation using morphological criteria used to establish the taxonomy of the family. Here, we investigated the mullet species diversity from Pakistan, a biogeographic area where nearly no mullet species were genetically characterized. Morphological examination of 40 mullets reveals 6 known species (Planiliza macrolepis, P. klunzingeri, P. subviridis, Crenimugil seheli, Ellochelon vaigiensis, and Mugil cephalus). Using a references DNA barcode library, the DNA barcode-based species identification flagged eight molecular operational taxonomic units (MOTUs) belonging to five genera (Crenimugil, Ellochelon, Mugil, Osteomugil, and Planiliza). Among these MOTUs, only one was already present in Barcode of Life Data system, all other representing new Barcode Index Numbers (BIN). These results emphasize the importance of the recognition of cryptic species and the necessity to re-evaluate the overall diversity by the genetic characterization of different species of this family. DNA barcoding is an effective tool to reveal cryptic species that need to be considered in conservation and management measures of fisheries in Pakistan.

scholarly journals DNA barcoding of Zygaenidae (Lepidoptera): results and perspectives

2019 ◽  
Vol 42 (2) ◽  
pp. 137-150
Author(s):  
Konstantin A. Efetov ◽  
Anna V. Kirsanova ◽  
Zoya S. Lazareva ◽  
Ekaterina V. Parshkova ◽  
Gerhard M. Tarmann ◽  
...  
Keyword(s):  
Dna Barcoding ◽  
Sequence Data ◽  
Dna Barcode ◽  
Sequence Divergence ◽  
Coi Gene ◽  
Dna Barcodes ◽  
The Family ◽  
The World ◽  
Biological Characters

The present study provides a DNA barcode library for the world Zygaenidae (Lepidoptera). This study reports 1031 sequence data of the COI gene DNA barcodes for more than 240 species in four of the five subfamilies of the family Zygaenidae. This is about 20% of the world Zygaenidae species. Our results demonstrate the specificity of the COI gene sequences at the species level in most of the studied Zygaenidae and agree with already established taxonomic opinions. The study confirms the effectiveness of DNA barcoding as a tool for determination of most Zygaenidae species. However, some of the results are contradictory. Some cases of shared barcodes have been found, as well as cases of deep intraspecific sequence divergence in species that are well separated by morphological and biological characters. These cases are discussed in detail. Overall, when combined with morphological and biochemical data, as well as biological and ecological observations, DNA barcoding results can be a useful support for taxonomic decisions.

Anthocoridae of the Pacific Northwest with Notes on Distributions, Life Histories, and Habits (Heteroptera)

1962 ◽  
Vol 94 (12) ◽  
pp. 1325-1334 ◽  
Author(s):  
N. H. Anderson
Keyword(s):  
British Columbia ◽  
Pacific Northwest ◽  
Life Histories ◽  
Common Species ◽  
Cascade Range ◽  
Museum Collections ◽  
Willamette Valley ◽  
The Pacific ◽  
The Family ◽  
Private Collections

This paper is an account of the distributions of the Anthocoridae of the Pacific Northwest (British Columbia, Washington, Oregon, and Idaho), with notes on the life histories of the more common species. It brings together the published and unpublished data on the family in that area. Seven species listed were previously unrecorded there and five others are new species recently described (Kelton and Anderson, 1962). In 1956 and 1957 intensive collecting was done in southern British Columbia and some material was collected in the Willamette Valley and east of the Cascade Range in Oregon. Specimens were examined in the important museum collections of the area and in some private collections.

scholarly journals A Rapid Colorimetric Assay for On-Site Authentication of Cephalopod Species

Biosensors ◽  
2020 ◽  
Vol 10 (12) ◽  
pp. 190
Author(s):  
Giuseppina Tatulli ◽  
Paola Cecere ◽  
Davide Maggioni ◽  
Andrea Galimberti ◽  
Pier Paolo Pompa
Keyword(s):  
Dna Barcoding ◽  
Genomic Dna ◽  
Large Scale ◽  
Colorimetric Assay ◽  
Dna Barcode ◽  
Mitochondrial Coi ◽  
Cephalopod Species ◽  
Accurate Design ◽  
Relevant Group ◽  
Species Specific

A colorimetric assay, exploiting the combination of loop-mediated isothermal amplification (LAMP) with DNA barcoding, was developed to address the authentication of some cephalopod species, a relevant group in the context of seafood traceability, due to the intensive processing from the fishing sites to the shelf. The discriminating strategy relies on accurate design of species-specific LAMP primers within the conventional 5’ end of the mitochondrial COI DNA barcode region and allows for the identification of Loligo vulgaris among two closely related and less valuable species. The assay, coupled to rapid genomic DNA extraction, is suitable for large-scale screenings and on-site applications due to its easy procedures, with fast (30 min) and visual readout.

scholarly journals Developing an efficient DNA barcoding system to differentiate between Lilium species

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Yixin Liu ◽  
Mingfang Zhang ◽  
Xuqing Chen ◽  
Xi Chen ◽  
Yue Hu ◽  
...  
Keyword(s):  
Dna Barcoding ◽  
Dna Barcode ◽  
Identification System ◽  
Representative Species ◽  
Lilium Species ◽  
Edible Species ◽  
Medicinal Properties ◽  
Species Specific ◽  
Genomic Regions

Abstract Background Lilium is an important ornamental bulb, possesses medicinal properties, and is also edible. Species within the Lilium genus share very similar morphology and macroscopic characteristics, thus they cannot be easily and clearly distinguished from one another. To date, no efficient species-specific markers have been developed for classifying wild lily species, which poses an issue with further characterizing its medicinal properties. Results To develop a simple and reliable identification system for Lilium, 45 representative species from 6 sections were used to develop a DNA barcoding system, which was based on DNA sequence polymorphisms. In this study, we assessed five commonly used DNA barcode candidates (ITS, rbcL, ycf1b, matK and psbA-trnH) and five novel barcode candidates obtained from highly variable chloroplast genomic regions (trnL-trnF, trnS-trnG, trnF-ndhJ, trnP-psaJ-rpI33 and psbB-psbH). We showed that a set of three novel DNA barcodes (ITS + trnP-psaJ-rpI33 + psbB-psbH) could be efficiently used as a genetic marker to distinguish between lily species, as assessed by methods including DNAsp, BI and ML tree, and Pair Wise Group (PWG). Conclusions A rapid and reliable DNA barcoding method was developed for all 45 wild Lilium species by using ITS, trnP-psaJ-rpI33, and psbB-psbH as DNA barcoding markers. The method can be used in the classification of wild Lilium species, especially endangered species, and also provides an effective method for selective lily breeding.

A molecular survey of Ralfsia sensu stricto (Ralfsiales, Phaeophyceae) in Canada uncovers three new species: R. robertii sp. nov., R. tenebris sp. nov., and R. unimaculata sp. nov.

Botany ◽  
2019 ◽  
Vol 97 (2) ◽  
pp. 135-147
Author(s):  
Manuela I. Parente ◽  
Gary W. Saunders
Keyword(s):  
New Species ◽  
Life Histories ◽  
Phylogenetic Analyses ◽  
Dna Barcode ◽  
Sensu Stricto ◽  
Haida Gwaii ◽  
Genetic Groups ◽  
The Pacific ◽  
The Family ◽  
Three New Species

Currently there are three species (i.e., traditional morphospecies) in Canada assigned to the genus Ralfsia sensu lato, which we establish is not monophyletic even after excluding “species” now known to apply to alternate stages in the life histories of non-ralfsialean species. These species include R. fungiformis (Gunnerus) Setchell & N.L.Gardner and R. pacifica Hollenberg in the Pacific, and R. fungiformis and R. verrucosa (J.E.Areschoug) J.E.Areschoug in the Atlantic. However, a DNA barcode survey of Ralfsiales in Canada using the markers COI-5P and rbcL-3P revealed five genetic groups assignable to Ralfsia sensu stricto (i.e., includes only species assigned to this genus based on phylogenetic analyses). Further complicating matters, of the three species listed previously as occurring in Canada only the type species R. fungiformis is assignable to Ralfsia sensu stricto. Ralfsia pacifica and R. verrucosa did not group with the generitype and thus are not assignable to Ralfsia sensu stricto; further, they did not group with the family Ralfsiaceae. They will be presented in a subsequent manuscript. The four other genetic groups in Canada assignable to Ralfsia sensu stricto are new species of which three are described here: Ralfsia robertii sp. nov., Ralfsia tenebris sp. nov., and Ralfsia unimaculata sp. nov. The fourth consisted of a single sterile specimen from Haida Gwaii, British Columbia, and was not characterized.

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