scholarly journals Bacteria in the global atmosphere – Part 1: Review and synthesis of literature data for different ecosystems

2009 ◽  
Vol 9 (3) ◽  
pp. 10777-10827 ◽  
Author(s):  
S. M. Burrows ◽  
W. Elbert ◽  
M. G. Lawrence ◽  
U. Pöschl
Keyword(s):  
Atmospheric Chemistry ◽  
Current Knowledge ◽  
Measurement Techniques ◽  
Culturable Bacteria ◽  
Bacterial Cells ◽  
Natural Ecosystems ◽  
Near Surface ◽  
Cloud Development ◽  
Flux Measurements ◽  
Bacterial Concentrations

Abstract. Bacteria are ubiquitous in the atmosphere, with concentrations of bacterial cells typically exceeding 1×104 m−3 over land. Numerous studies have suggested that the presence of bacteria in the atmosphere may impact cloud development, atmospheric chemistry, and microbial biogeography. A sound knowledge of bacterial concentrations and distributions in the atmosphere is needed to evaluate these claims. This review focusses on published measurements of total and culturable bacteria concentrations in the atmospheric aerosol. We discuss emission mechanisms and the impacts of meteorological conditions and measurement techniques on measured bacteria concentrations. Based on the literature reviewed, we suggest representative values and ranges for the mean concentration in the near-surface air of nine natural ecosystems and three human-influenced land types. We discuss the gaps in current knowledge of bacterial concentrations in air, including the lack of reliable, long-term measurements of the total microbial concentrations in many regions and the scarcity of emission flux measurements.

scholarly journals Bacteria in the global atmosphere – Part 1: Review and synthesis of literature data for different ecosystems

2009 ◽  
Vol 9 (23) ◽  
pp. 9263-9280 ◽  
Author(s):  
S. M. Burrows ◽  
W. Elbert ◽  
M. G. Lawrence ◽  
U. Pöschl
Keyword(s):  
Atmospheric Chemistry ◽  
Current Knowledge ◽  
Measurement Techniques ◽  
Culturable Bacteria ◽  
Bacterial Cells ◽  
Natural Ecosystems ◽  
Near Surface ◽  
Cloud Development ◽  
Flux Measurements ◽  
Bacterial Concentrations

Abstract. Bacteria are ubiquitous in the atmosphere, with concentrations of bacterial cells typically exceeding 1×104 m−3 over land. Numerous studies have suggested that the presence of bacteria in the atmosphere may impact cloud development, atmospheric chemistry, and microbial biogeography. A sound knowledge of bacterial concentrations and distributions in the atmosphere is needed to evaluate these claims. This review focusses on published measurements of total and culturable bacteria concentrations in the atmospheric aerosol. We discuss emission mechanisms and the impacts of meteorological conditions and measurement techniques on measured bacteria concentrations. Based on the literature reviewed, we suggest representative values and ranges for the mean concentration in the near-surface air of nine natural ecosystems and three human-influenced land types. We discuss the gaps in current knowledge of bacterial concentrations in air, including the lack of reliable, long-term measurements of the total microbial concentrations in many regions and the scarcity of emission flux measurements.

scholarly journals Soot reference materials for instrument calibration and intercomparisons: a workshop summary with recommendations

2012 ◽  
Vol 5 (8) ◽  
pp. 1869-1887 ◽  
Author(s):  
D. Baumgardner ◽  
O. Popovicheva ◽  
J. Allan ◽  
V. Bernardoni ◽  
J. Cao ◽  
...  
Keyword(s):  
Reference Materials ◽  
Atmospheric Chemistry ◽  
Current Knowledge ◽  
Global Climate ◽  
Measurement Techniques ◽  
Measurement Methods ◽  
Standard Reference Materials ◽  
Many Instruments ◽  
Measurement Uncertainties ◽  
Soot Measurement

Abstract. Soot, which is produced from biomass burning and the incomplete combustion of fossil and biomass fuels, has been linked to regional and global climate change and to negative health problems. Scientists measure the properties of soot using a variety of methods in order to quantify source emissions and understand its atmospheric chemistry, reactivity under emission conditions, interaction with solar radiation, influence on clouds, and health impacts. A major obstacle currently limiting progress is the absence of established standards or reference materials for calibrating the many instruments used to measure the various properties of soot. The current state of availability and practicability of soot standard reference materials (SRMs) was reviewed by a group of 50 international experts during a workshop in June of 2011. The workshop was convened to summarize the current knowledge on soot measurement techniques, identify the measurement uncertainties and limitations related to the lack of soot SRMs, and identify attributes of SRMs that, if developed, would reduce measurement uncertainties. The workshop established that suitable SRMs are available for calibrating some, but not all, measurement methods. The community of users of the single-particle soot-photometer (SP2), an instrument using laser-induced incandescence, identified a suitable SRM, fullerene soot, but users of instruments that measure light absorption by soot collected on filters did not. Similarly, those who use thermal optical analysis (TOA) to analyze the organic and elemental carbon components of soot were not satisfied with current SRMs. The workshop, and subsequent, interactive discussions, produced a number of recommendations for the development of new SRMs, and their implementation, that would be suitable for the different soot measurement methods.

scholarly journals Soot Reference Materials for instrument calibration and intercomparisons: a workshop summary with recommendations

2012 ◽  
Vol 5 (2) ◽  
pp. 2315-2362 ◽  
Author(s):  
D. Baumgardner ◽  
O. Popovicheva ◽  
J. Allan ◽  
V. Bernardoni ◽  
J. Cao ◽  
...  
Keyword(s):  
Reference Materials ◽  
Atmospheric Chemistry ◽  
Current Knowledge ◽  
Global Climate ◽  
Measurement Techniques ◽  
Measurement Methods ◽  
Standard Reference Materials ◽  
Many Instruments ◽  
Measurement Uncertainties ◽  
Soot Measurement

Abstract. Soot, which is produced from biomass burning and the incomplete combustion of fossil and biomass fuels, has been linked to regional and global climate change and to negative health problems. Scientists measure soot using a variety of methods in order to quantify source emissions and understand its atmospheric chemistry, reactivity under emission conditions, interaction with solar radiation, influence on clouds, and health impacts. A major obstacle currently limiting progress is the absence of established standards or reference materials for calibrating the many instruments used to measure the various properties of soot. The current state of availability and practicability of soot standard reference materials (SRMs) was reviewed by a group of 50 international experts during a workshop in June of 2011. The workshop was convened to summarize the current knowledge on soot measurement techniques, identify the measurement uncertainties and limitations related to the lack of SRMs, and identify attributes of SRMs that, if developed, would reduce measurement uncertainties. The workshop established that suitable SRMs are available for calibrating some, but not all, measurement methods. The community of single-particle sootphotometer (SP2) users identified a suitable SRM, fullerene soot, but users of instruments that measure light absorption by soot collected on filters did not. Similarly, those who use thermal optical analysis (TOA) to analyze the organic and elemental carbon components of soot were not satisfied with current SRMs. The workshop produced recommendations for the development of new SRMs that would be suitable for the different soot measurement methods.

scholarly journals Bacteria in the global atmosphere – Part 2: Modeling of emissions and transport between different ecosystems

2009 ◽  
Vol 9 (23) ◽  
pp. 9281-9297 ◽  
Author(s):  
S. M. Burrows ◽  
T. Butler ◽  
P. Jöckel ◽  
H. Tost ◽  
A. Kerkweg ◽  
...  
Keyword(s):  
Seasonal Variation ◽  
Residence Time ◽  
General Circulation ◽  
Bacterial Species ◽  
Circulation Model ◽  
Cloud Condensation Nucleus ◽  
Cloud Formation ◽  
Emission Region ◽  
Culturable Bacteria ◽  
Bacterial Cells

Abstract. Bacteria are constantly being transported through the atmosphere, which may have implications for human health, agriculture, cloud formation, and the dispersal of bacterial species. We simulate the global transport of bacteria, represented as 1 μm and 3 μm diameter spherical solid particle tracers in a general circulation model. We investigate factors influencing residence time and distribution of the particles, including emission region, cloud condensation nucleus activity and removal by ice-phase precipitation. The global distribution depends strongly on the assumptions made about uptake into cloud droplets and ice. The transport is also affected, to a lesser extent, by the emission region, particulate diameter, and season. We find that the seasonal variation in atmospheric residence time is insufficient to explain by itself the observed seasonal variation in concentrations of particulate airborne culturable bacteria, indicating that this variability is mainly driven by seasonal variations in culturability and/or emission strength. We examine the potential for exchange of bacteria between ecosystems and obtain rough estimates of the flux from each ecosystem by using a maximum likelihood estimation technique, together with a new compilation of available observations described in a companion paper. Globally, we estimate the total emissions of bacteria-containing particles to the atmosphere to be 7.6×1023–3.5×1024 a−1, originating mainly from grasslands, shrubs and crops. We estimate the mass of emitted bacteria- to be 40–1800 Gg a−1, depending on the mass fraction of bacterial cells in the particles. In order to improve understanding of this topic, more measurements of the bacterial content of the air and of the rate of surface-atmosphere exchange of bacteria will be necessary. Future observations in wetlands, hot deserts, tundra, remote glacial and coastal regions and over oceans will be of particular interest.

The response of planktonic phosphate uptake and turnover to ultraviolet radiation in Lake Erie

2002 ◽  
Vol 59 (5) ◽  
pp. 778-786 ◽  
Author(s):  
C D Allen ◽  
R E.H Smith
Keyword(s):  
Ultraviolet Radiation ◽  
Lake Erie ◽  
Radiation Treatment ◽  
Phosphate Uptake ◽  
Ultraviolet B ◽  
Phosphate Limitation ◽  
Bacterial Cells ◽  
Near Surface ◽  
Ambient Concentrations ◽  
Uptake Activity

The hypothesis that ambient ultraviolet radiation (UVR), at near-surface intensities, may diminish phosphorus availability to phytoplankton was tested in Lake Erie in July and August of 1998 and 1999. Relative to samples exposed to photosynthetically active radiation (PAR, 400–700 nm) only, those exposed to ultraviolet-B (UVB, 280–320) and (or) ultraviolet-A (UVA, 320–400 nm) in natural sunlight, or kept in darkness, had diminished phosphate uptake rates at elevated (1 µM P) dissolved phosphate concentrations. By contrast, the specific uptake rate of dissolved phosphate at ambient concentrations (turnover rate) was not significantly affected by UVR or darkness. Turnover was usually dominated by particles smaller than 0.8 µm, whereas uptake from elevated concentrations was dominated by larger particles. The size distribution of turnover and uptake activity was not affected by radiation treatment. Chlorophyll a concentrations were decreased by sufficient exposure to UVB and (or) UVA and increased by deprivation of PAR (dark controls), but the concentration of bacterial cells was unaffected. The results showed that UVR inhibited the phosphate uptake potential of larger, probably algal, plankton but did not change the apparent severity of phosphate limitation at ambient concentrations.

scholarly journals Impact of the Resistance Responses to Stress Conditions Encountered in Food and Food Processing Environments on the Virulence and Growth Fitness of Non-Typhoidal Salmonellae

Foods ◽  
2021 ◽  
Vol 10 (3) ◽  
pp. 617
Author(s):  
Silvia Guillén ◽  
Laura Nadal ◽  
Ignacio Álvarez ◽  
Pilar Mañas ◽  
Guillermo Cebrián
Keyword(s):  
Stress Resistance ◽  
Food Processing ◽  
Current Knowledge ◽  
Foodborne Pathogen ◽  
Stress Conditions ◽  
Bacterial Cells ◽  
Modified Atmospheres ◽  
Development Of Resistance ◽  
Salmonella Virulence ◽  
Short Time

The success of Salmonella as a foodborne pathogen can probably be attributed to two major features: its remarkable genetic diversity and its extraordinary ability to adapt. Salmonella cells can survive in harsh environments, successfully compete for nutrients, and cause disease once inside the host. Furthermore, they are capable of rapidly reprogramming their metabolism, evolving in a short time from a stress-resistance mode to a growth or virulent mode, or even to express stress resistance and virulence factors at the same time if needed, thanks to a complex and fine-tuned regulatory network. It is nevertheless generally acknowledged that the development of stress resistance usually has a fitness cost for bacterial cells and that induction of stress resistance responses to certain agents can trigger changes in Salmonella virulence. In this review, we summarize and discuss current knowledge concerning the effects that the development of resistance responses to stress conditions encountered in food and food processing environments (including acid, osmotic and oxidative stress, starvation, modified atmospheres, detergents and disinfectants, chilling, heat, and non-thermal technologies) exerts on different aspects of the physiology of non-typhoidal Salmonellae, with special emphasis on virulence and growth fitness.

scholarly journals An ecosystem-scale perspective of the net land methanol flux: synthesis of micrometeorological flux measurements

2015 ◽  
Vol 15 (13) ◽  
pp. 7413-7427 ◽  
Author(s):  
G. Wohlfahrt ◽  
C. Amelynck ◽  
C. Ammann ◽  
A. Arneth ◽  
I. Bamberger ◽  
...  
Keyword(s):  
Atmospheric Chemistry ◽  
Dominant Role ◽  
Terrestrial Ecosystem ◽  
Surface Wetness ◽  
Flux Synthesis ◽  
Leaf Level ◽  
Flux Measurements ◽  
The Rich ◽  
Study Sites ◽  
Source Sink

Abstract. Methanol is the second most abundant volatile organic compound in the troposphere and plays a significant role in atmospheric chemistry. While there is consensus about the dominant role of living plants as the major source and the reaction with OH as the major sink of methanol, global methanol budgets diverge considerably in terms of source/sink estimates, reflecting uncertainties in the approaches used to model and the empirical data used to separately constrain these terms. Here we compiled micrometeorological methanol flux data from eight different study sites and reviewed the corresponding literature in order to provide a first cross-site synthesis of the terrestrial ecosystem-scale methanol exchange and present an independent data-driven view of the land–atmosphere methanol exchange. Our study shows that the controls of plant growth on production, and thus the methanol emission magnitude, as well as stomatal conductance on the hourly methanol emission variability, established at the leaf level, hold across sites at the ecosystem level. Unequivocal evidence for bi-directional methanol exchange at the ecosystem scale is presented. Deposition, which at some sites even exceeds methanol emissions, represents an emerging feature of ecosystem-scale measurements and is likely related to environmental factors favouring the formation of surface wetness. Methanol may adsorb to or dissolve in this surface water and eventually be chemically or biologically removed from it. Management activities in agriculture and forestry are shown to increase local methanol emission by orders of magnitude; however, they are neglected at present in global budgets. While contemporary net land methanol budgets are overall consistent with the grand mean of the micrometeorological methanol flux measurements, we caution that the present approach of simulating methanol emission and deposition separately is prone to opposing systematic errors and does not allow for full advantage to be taken of the rich information content of micrometeorological flux measurements.

scholarly journals Surface fluxes of bromoform and dibromomethane over the tropical western Pacific inferred from airborne in situ measurements

2017 ◽  
Author(s):  
Liang Feng ◽  
Paul I. Palmer ◽  
Robyn Butler ◽  
Stephen J. Andrews ◽  
Elliot L. Atlas ◽  
...  
Keyword(s):  
Boundary Layer ◽  
Atmospheric Chemistry ◽  
Marine Boundary Layer ◽  
Current Knowledge ◽  
A Priori ◽  
Surface Fluxes ◽  
Western Pacific ◽  
Study Region ◽  
The Western Pacific ◽  
Aircraft Data

Abstract. We infer surface fluxes of bromoform (CHBr3) and dibromoform (CH2Br2) from aircraft observations over the western Pacific using a tagged version of the GEOS-Chem global 3-D atmospheric chemistry model and a Maximum A Posteriori inverse model. The distribution of a priori ocean emissions of these gases are reasonably consistent with observed atmospheric mole fractions of CHBr3 (r = 0.62) and CH2Br2 (r = 0.38). These a priori emissions result in a positive model bias in CHBr3 peaking in the marine boundary layer, but capture observed values of CH2Br2 with no significant bias by virtue of its longer atmospheric lifetime. Using GEOS-Chem, we find that observed variations in atmospheric CHBr3 are determined equally by sources over the western Pacific and those outside the study region, but observed variations in CH2Br2 are determined mainly by sources outside the western Pacific. Numerical closed-loop experiments show that the spatial and temporal distribution of boundary layer aircraft data have the potential to substantially improve current knowledge of these fluxes, with improvements related to data density. Using the aircraft data, we estimate aggregated regional fluxes of 3.6 ± 0.3 × 108 g/month and 0.7 ± 0.1 × 108 g/month for CHBr3 and CH2Br2 over 130°–155° E and 0°–12° N, respectively, which represent reductions of 20–40 % and substantial spatial deviations from the a priori inventory. We find no evidence to support a robust linear relationship between CHBr3 and CH2Br2 oceanic emissions, as used by previous studies.

scholarly journals Micrometeorological measurement of hexachlorobenzene and polychlorinated biphenyl compound air-water gas exchange in Lake Superior and comparison to model predictions

2012 ◽  
Vol 12 (10) ◽  
pp. 4607-4617 ◽  
Author(s):  
M. D. Rowe ◽  
J. A. Perlinger
Keyword(s):  
Water Exchange ◽  
Polychlorinated Biphenyl ◽  
Lake Superior ◽  
Estimation Method ◽  
Internal Boundary ◽  
Transfer Model ◽  
Atmospheric Concentration ◽  
Transfer Velocity ◽  
Near Surface ◽  
Flux Measurements

Abstract. Air-water exchange fluxes of persistent, bioaccumulative and toxic (PBT) substances are frequently estimated using the Whitman two-film (W2F) method, but micrometeorological flux measurements of these compounds over water are rarely attempted. We measured air-water exchange fluxes of hexachlorobenzene (HCB) and polychlorinated biphenyls (PCBs) on 14 July 2006 in Lake Superior using the modified Bowen ratio (MBR) method. Measured fluxes were compared to estimates using the W2F method, and to estimates from an Internal Boundary Layer Transport and Exchange (IBLTE) model that implements the NOAA COARE bulk flux algorithm and gas transfer model. We reveal an inaccuracy in the estimate of water vapor transfer velocity that is commonly used with the W2F method for PBT flux estimation, and demonstrate the effect of use of an improved estimation method. Flux measurements were conducted at three stations with increasing fetch in offshore flow (15, 30, and 60 km) in southeastern Lake Superior. This sampling strategy enabled comparison of measured and predicted flux, as well as modification in near-surface atmospheric concentration with fetch, using the IBLTE model. Fluxes estimated using the W2F model were compared to fluxes measured by MBR. In five of seven cases in which the MBR flux was significantly greater than zero, concentration increased with fetch at 1-m height, which is qualitatively consistent with the measured volatilization flux. As far as we are aware, these are the first reported ship-based micrometeorological air-water exchange flux measurements of PCBs.

scholarly journals Modern Geodetic Measurement Techniques in Gravimetric Studies on the Example of Gypsum Karst in the Siesławice Region

2018 ◽  
Vol 35 ◽  
pp. 03002 ◽  
Author(s):  
Sławomir Porzucek ◽  
Monika Łój ◽  
Karolina Matwij ◽  
Wojciech Matwij
Keyword(s):  
Laser Scanning ◽  
Measurement Techniques ◽  
Three Dimensional ◽  
Digital Terrain Model ◽  
Field Studies ◽  
Surface Zone ◽  
Three Dimensional Model ◽  
Geodetic Measurement ◽  
Near Surface ◽  
Gypsum Karst

In the region of Siesławice (near Busko-Zdrój, Poland) there are unique phenomena of gypsum karst. Atmospheric factors caused numerous gypsum outcrops, canals and underground voids. The article presents the possibility of using non-invasive gravimetric surveys supplemented with geodetic measurements to illustrate karst changes occurring around the void. The use of modern geodetic measurement techniques including terrestrial and airborne laser scanning enables to generate a digital terrain model and a three-dimensional model of voids. Gravimetric field studies allowed to map the anomalies of the gravitational field of the near-surface zone. Geodetic measurement results have made it possible to accurately determine the terrain correction that supplemented the gravimetric anomaly information. Geophysical interpretation indicate the presence of weathered rocks in the near surface zone and fractures and loosened zones located surround the karst cave.

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