Tuning ocean biogeochemistry in the Earth system — insights from the HAMburg Ocean Carbon Cycle model

2021 ◽  
Author(s):  
Fatemeh Chegini ◽  
Lennart Ramme ◽  
Jöran März ◽  
Katharina Six ◽  
Daniel Burt ◽  
...  
Keyword(s):  
Ocean Circulation ◽  
Circulation Model ◽  
Global Ocean ◽  
Earth System ◽  
Carbon Cycle Model ◽  
Tuning Parameters ◽  
The Earth ◽  
Ocean Biogeochemistry ◽  
Ocean Carbon ◽  
Model Ocean

<div>Ocean biogeochemistry as part of the Earth system impacts the uptake of atmospheric CO<sub>2</sub> and storage of carbon in the ocean. In the ICON-O (Icosahedral non-hydrostatic general circulation model) ocean model, ocean biogeochemistry is represented by the HAMburg Ocean Carbon Cycle model (HAMOCC; Ilyina et al. 2013, Mauritsen et al. 2019, Maerz et al. 2020). Here, we present the results of an ongoing effort to tune HAMOCC (i.e. adapt parameters within the uncertainty range) to accommodate the ocean circulation simulated by ICON-O.</div><div>The tuning of biogeochemical models, including HAMOCC, has previously been an iterative, and a rather random process combining expert knowledge and a suite of parameter testings. A documented, systematic procedure, describing how to tune these models is lacking. Therefore, while tuning HAMOCC in ICON-O, we aim at filling this gap by structuring the process and documenting the steps taken to tune a biogeochemistry model in a global general ocean circulation model.</div><div>The ocean circulation has a large impact on the distribution of biogeochemical tracers, as biases in the circulation will, for example, impact the upwelling of nutrients or the CO<sub>2</sub> exchange with the atmosphere. We investigate the impact of physical parameterization such as the Gent-McWilliam eddy parameterization and the vertical mixing scheme on the choice of HAMOCC tuning parameters. We then compare the spatial distribution of major state variables such as nutrients and alkalinity to observational data ( WOA; Garcia et al 2013, GLODAP; Key et al 2004) and evaluate the key tendencies such as CO<sub>2</sub> surface fluxes and attenuation of particulate organic matter fluxes. Furthermore, we discuss the tuning steps, choices of the tuning parameters and their impact on the simulated biogeochemistry. The envisioned outcome of this work is a tuned ocean biogeochemistry component for the here used ICON-O model and a more generalized tuning procedure that can be applied to other models or HAMOCC in different model configurations (coupled runs, different resolution).</div><div> </div><p>Garcia, H. E., et al. 2014: World Ocean Atlas 2013, NOAA Atlas NESDIS 76, Volume4: Dissolved Inorganic Nutrients (phosphate, nitrate, silicate), 25pp.</p><p>lyina, T., et al. 2013: Global ocean biogeochemistry model HAMOCC: Model architecture and performance as component of the MPI-Earth system model in different CMIP5 experimental realizations, J. Adv. Model. Earth Sy., 5, .</p><p>Key, R., et al. 2004: A global ocean carbon climatology: Results from Global Data Analysis Project, Global Biogeochem. Cycles, 18, 4, https://doi.org/10.1029/2004GB002247.</p><p>Maerz et al. 2020: Microstructure and composition of marine aggregates as co-determinants for vertical particulate organic carbon transfer in the global ocean, Biogeosciences, 17, 7, https://doi.org/10.5194/bg-17-1765-2020.</p><p>Mauritsen, T., et al. 2019: Developments in the MPI-M Earth System Model version 1.2 (MPI-ESM1.2) and Its Response to Increasing CO<sub>2</sub>, J. Adv. Model. Earth Sy., 11, https://doi.org/10.1029/2018MS001400.</p><p> </p>

scholarly journals Strong sensitivity of Southern Ocean carbon uptake and nutrient cycling to wind stirring

2013 ◽  
Vol 10 (9) ◽  
pp. 15033-15076 ◽  
Author(s):  
K. B. Rodgers ◽  
O. Aumont ◽  
S. E. Mikaloff Fletcher ◽  
Y. Plancherel ◽  
L. Bopp ◽  
...  
Keyword(s):  
Carbon Cycle ◽  
Southern Ocean ◽  
Ad Hoc ◽  
Global Ocean ◽  
Nutrient Concentrations ◽  
Carbon Uptake ◽  
Carbon Cycle Model ◽  
Ocean Biogeochemistry ◽  
Ocean Carbon ◽  
The Impact

Abstract. Here we test the hypothesis that winds have an important role in determining the rate of exchange of CO2 between the atmosphere and ocean through wind stirring over the Southern Ocean. This is tested with a sensitivity study using an ad hoc parameterization of wind stirring in an ocean carbon cycle model. The objective is to identify the way in which perturbations to the vertical density structure of the planetary boundary in the ocean impacts the carbon cycle and ocean biogeochemistry. Wind stirring leads to reduced uptake of CO2 by the Southern Ocean over the period 2000–2006, with differences of order 0.9 Pg C yr−1 over the region south of 45° S. Wind stirring impacts not only the mean carbon uptake, but also the phasing of the seasonal cycle of carbon and other species associated with ocean biogeochemistry. Enhanced wind stirring delays the seasonal onset of stratification, and this has large impacts on both entrainment and the biological pump. It is also found that there is a strong sensitivity of nutrient concentrations exported in Subantarctic Mode Water (SAMW) to wind stirring. This finds expression not only locally over the Southern Ocean, but also over larger scales through the impact on advected nutrients. In summary, the large sensitivity identified with the ad hoc wind stirring parameterization offers support for the importance of wind stirring for global ocean biogeochemistry, through its impact over the Southern Ocean.

scholarly journals Strong sensitivity of Southern Ocean carbon uptake and nutrient cycling to wind stirring

2014 ◽  
Vol 11 (15) ◽  
pp. 4077-4098 ◽  
Author(s):  
K. B. Rodgers ◽  
O. Aumont ◽  
S. E. Mikaloff Fletcher ◽  
Y. Plancherel ◽  
L. Bopp ◽  
...  
Keyword(s):  
Carbon Cycle ◽  
Southern Ocean ◽  
Ad Hoc ◽  
Global Ocean ◽  
Relative Reduction ◽  
Carbon Uptake ◽  
Carbon Cycle Model ◽  
Ocean Biogeochemistry ◽  
Ocean Carbon ◽  
The Impact

Abstract. Here we test the hypothesis that winds have an important role in determining the rate of exchange of CO2 between the atmosphere and ocean through wind stirring over the Southern Ocean. This is tested with a sensitivity study using an ad hoc parameterization of wind stirring in an ocean carbon cycle model, where the objective is to identify the way in which perturbations to the vertical density structure of the planetary boundary in the ocean impacts the carbon cycle and ocean biogeochemistry. Wind stirring leads to reduced uptake of CO2 by the Southern Ocean over the period 2000–2006, with a relative reduction with wind stirring on the order of 0.9 Pg C yr−1 over the region south of 45° S. This impacts not only the mean carbon uptake, but also the phasing of the seasonal cycle of carbon and other ocean biogeochemical tracers. Enhanced wind stirring delays the seasonal onset of stratification, and this has large impacts on both entrainment and the biological pump. It is also found that there is a strong reduction on the order of 25–30% in the concentrations of NO3 exported in Subantarctic Mode Water (SAMW) to wind stirring. This finds expression not only locally over the Southern Ocean, but also over larger scales through the impact on advected nutrients. In summary, the large sensitivity identified with the ad hoc wind stirring parameterization offers support for the importance of wind stirring for global ocean biogeochemistry through its impact over the Southern Ocean.

On the impact of sea ice in a global ocean circulation model

1997 ◽  
Vol 25 ◽  
pp. 111-115 ◽  
Author(s):  
Achim Stössel
Keyword(s):  
Southern Ocean ◽  
Sea Ice ◽  
Ocean Circulation ◽  
General Circulation ◽  
Thermohaline Circulation ◽  
Circulation Model ◽  
Deep Ocean ◽  
Global Ocean ◽  
Convective Activity ◽  
The Impact

This paper investigates the long-term impact of sea ice on global climate using a global sea-ice–ocean general circulation model (OGCM). The sea-ice component involves state-of-the-art dynamics; the ocean component consists of a 3.5° × 3.5° × 11 layer primitive-equation model. Depending on the physical description of sea ice, significant changes are detected in the convective activity, in the hydrographic properties and in the thermohaline circulation of the ocean model. Most of these changes originate in the Southern Ocean, emphasizing the crucial role of sea ice in this marginally stably stratified region of the world's oceans. Specifically, if the effect of brine release is neglected, the deep layers of the Southern Ocean warm up considerably; this is associated with a weakening of the Southern Hemisphere overturning cell. The removal of the commonly used “salinity enhancement” leads to a similar effect. The deep-ocean salinity is almost unaffected in both experiments. Introducing explicit new-ice thickness growth in partially ice-covered gridcells leads to a substantial increase in convective activity, especially in the Southern Ocean, with a concomitant significant cooling and salinification of the deep ocean. Possible mechanisms for the resulting interactions between sea-ice processes and deep-ocean characteristics are suggested.

scholarly journals A potential feedback loop underlying glacial-interglacial cycles

2021 ◽  
Author(s):  
Els Weinans ◽  
Anne Willem Omta ◽  
George A. K. van Voorn ◽  
Egbert H. van Nes
Keyword(s):  
Ocean Circulation ◽  
Feedback Loop ◽  
Atmospheric Temperature ◽  
Earth System ◽  
Biological Productivity ◽  
Ocean Ventilation ◽  
The Earth ◽  
Main Driver ◽  
Underlying Mechanisms ◽  
Convergent Cross Mapping

AbstractThe sawtooth-patterned glacial-interglacial cycles in the Earth’s atmospheric temperature are a well-known, though poorly understood phenomenon. Pinpointing the relevant mechanisms behind these cycles will not only provide insights into past climate dynamics, but also help predict possible future responses of the Earth system to changing CO$$_2$$ 2 levels. Previous work on this phenomenon suggests that the most important underlying mechanisms are interactions between marine biological production, ocean circulation, temperature and dust. So far, interaction directions (i.e., what causes what) have remained elusive. In this paper, we apply Convergent Cross-Mapping (CCM) to analyze paleoclimatic and paleoceanographic records to elucidate which mechanisms proposed in the literature play an important role in glacial-interglacial cycles, and to test the directionality of interactions. We find causal links between ocean ventilation, biological productivity, benthic $$\delta ^{18}$$ δ 18 O and dust, consistent with some but not all of the mechanisms proposed in the literature. Most importantly, we find evidence for a potential feedback loop from ocean ventilation to biological productivity to climate back to ocean ventilation. Here, we propose the hypothesis that this feedback loop of connected mechanisms could be the main driver for the glacial-interglacial cycles.

scholarly journals Impact of partial steps and momentum advection schemes in a global ocean circulation model at eddy-permitting resolution

2006 ◽  
Vol 56 (5-6) ◽  
pp. 543-567 ◽  
Author(s):  
Barnier Bernard ◽  
Gurvan Madec ◽  
Thierry Penduff ◽  
Jean-Marc Molines ◽  
Anne-Marie Treguier ◽  
...  
Keyword(s):  
Ocean Circulation ◽  
Circulation Model ◽  
Global Ocean ◽  
Ocean Circulation Model ◽  
Advection Schemes ◽  
Global Ocean Circulation

scholarly journals Multi-grid algorithm for passive tracer transport in the NEMO ocean circulation model: a case study with the NEMO OGCM (version 3.6)

2020 ◽  
Vol 13 (11) ◽  
pp. 5465-5483
Author(s):  
Clément Bricaud ◽  
Julien Le Sommer ◽  
Gurvan Madec ◽  
Christophe Calone ◽  
Julie Deshayes ◽  
...  
Keyword(s):  
Spatial Resolution ◽  
Ocean Circulation ◽  
Circulation Model ◽  
Ocean Model ◽  
Ocean Dynamics ◽  
Global Ocean ◽  
Passive Tracer ◽  
Tracer Transport ◽  
Ocean Circulation Model ◽  
Grid Algorithm

Abstract. Ocean biogeochemical models are key tools for both scientific and operational applications. Nevertheless the cost of these models is often expensive because of the large number of biogeochemical tracers. This has motivated the development of multi-grid approaches where ocean dynamics and tracer transport are computed on grids of different spatial resolution. However, existing multi-grid approaches to tracer transport in ocean modelling do not allow the computation of ocean dynamics and tracer transport simultaneously. This paper describes a new multi-grid approach developed for accelerating the computation of passive tracer transport in the Nucleus for European Modelling of the Ocean (NEMO) ocean circulation model. In practice, passive tracer transport is computed at runtime on a grid with coarser spatial resolution than the hydrodynamics, which reduces the CPU cost of computing the evolution of tracers. We describe the multi-grid algorithm, its practical implementation in the NEMO ocean model, and discuss its performance on the basis of a series of sensitivity experiments with global ocean model configurations. Our experiments confirm that the spatial resolution of hydrodynamical fields can be coarsened by a factor of 3 in both horizontal directions without significantly affecting the resolved passive tracer fields. Overall, the proposed algorithm yields a reduction by a factor of 7 of the overhead associated with running a full biogeochemical model like PISCES (with 24 passive tracers). Propositions for further reducing this cost without affecting the resolved solution are discussed.

scholarly journals The influence of the ocean circulation state on ocean carbon storage and CO<sub>2</sub> drawdown potential in an Earth system model

2017 ◽  
Author(s):  
Malin Ödalen ◽  
Jonas Nycander ◽  
Kevin I. C. Oliver ◽  
Laurent Brodeau ◽  
Andy Ridgwell
Keyword(s):  
Carbon Storage ◽  
Wind Stress ◽  
Ocean Circulation ◽  
System Model ◽  
Biological Pump ◽  
Earth System ◽  
Heat Diffusivity ◽  
Initial States ◽  
Ocean Carbon ◽  
Atmospheric Heat

Abstract. During the four most recent glacial cycles, atmospheric CO2 during glacial maxima has been lowered by about 90–100 ppm with respect to interglacials. There is widespread consensus that most of this carbon was partitioned in the ocean. It is however still debated which processes were dominant in achieving this increased carbon storage. In this paper, we use an Earth system model of intermediate complexity to constrain the range in ocean carbon storage for an ensemble of ocean circulation equilibrium states. We do a set of simulations where we run the model to pre-industrial equilibrium, but where we achieve different ocean circulation by changing forcing parameters such as wind stress, ocean diffusivity and atmospheric heat diffusivity. As a consequence, the ensemble members also have different ocean carbon reservoirs, global ocean average temperatures, biological pump efficiencies and conditions for air-sea CO2 disequilibrium. We analyse changes in total ocean carbon storage and separate it into contributions by the solubility pump, the biological pump and the CO2 disequilibrium component. We also relate these contributions to differences in strength of ocean overturning circulation. In cases with weaker circulation, we see that the ocean's capacity for carbon storage is larger. Depending on which ocean forcing parameter that is tuned, the origin of the change in carbon storage is different. When wind stress or ocean vertical diffusivity is changed, the response of the biological pump gives the most important effect on ocean carbon storage, whereas when atmospheric heat diffusivity or ocean horizontal diffusivity is changed, the solubility pump and the disequilibrium component are also important and sometimes dominant. Finally, we do a drawdown experiment, where we investigate the capacity for increased carbon storage by maximising the efficiency of the biological pump in our ensemble members. We conclude that different initial states for an ocean model result in different capacities for ocean carbon storage, due to differences in the ocean circulation state. This could explain why it is difficult to achieve comparable responses of the ocean carbon pumps in model intercomparison studies, where the initial states vary between models. The drawdown experiment highlights the importance of the strength of the biological pump in the control state for model studies of increased biological efficiency.

Evaluating Effects of Observational Data Assimilation in General Ocean Circulation Model by Ensemble Kalman Filtering: Numerical Experiments with Synthetic Observations

2021 ◽  
pp. 50-66
Author(s):  
V. N. Stepanov ◽  
◽  
Yu. D. Resnyanskii ◽  
B. S. Strukov ◽  
A. A. Zelen’ko ◽  
...  
Keyword(s):  
Data Assimilation ◽  
Observational Data ◽  
Ocean Circulation ◽  
Numerical Experiments ◽  
Turbulent Viscosity ◽  
Bottom Topography ◽  
Synthetic Data ◽  
Circulation Model ◽  
Ocean Model ◽  
Global Ocean

The quality of simulation of model fields is analyzed depending on the assimilation of various types of data using the PDAF software product assimilating synthetic data into the NEMO global ocean model. Several numerical experiments are performed to simulate the ocean–sea ice system. Initially, free model was run with different values of the coefficients of horizontal turbulent viscosity and diffusion, but with the same atmospheric forcing. The model output obtained with higher values of these coefficients was used to determine the first guess fields in subsequent experiments with data assimilation, while the model results with lower values of the coefficients were assumed to be true states, and a part of these results was used as synthetic observations. The results are analyzed that are assimilation of various types of observational data using the Kalman filter included through the PDAF to the NEMO model with real bottom topography. It is shown that a degree of improving model fields in the process of data assimilation is highly dependent on the structure of data at the input of the assimilation procedure.

scholarly journals Deep ocean ventilation, carbon isotopes, marine sedimentation and the deglacial CO<sub>2</sub> rise

2011 ◽  
Vol 7 (3) ◽  
pp. 771-800 ◽  
Author(s):  
T. Tschumi ◽  
F. Joos ◽  
M. Gehlen ◽  
C. Heinze
Keyword(s):  
Southern Ocean ◽  
Ocean Circulation ◽  
Isotope Composition ◽  
Deep Ocean ◽  
Atmospheric Co2 ◽  
Carbon Cycle Model ◽  
Ocean Ventilation ◽  
Marine Sedimentation ◽  
Sediment Formation ◽  
Ocean Carbon

Abstract. The link between the atmospheric CO2 level and the ventilation state of the deep ocean is an important building block of the key hypotheses put forth to explain glacial-interglacial CO2 fluctuations. In this study, we systematically examine the sensitivity of atmospheric CO2 and its carbon isotope composition to changes in deep ocean ventilation, the ocean carbon pumps, and sediment formation in a global 3-D ocean-sediment carbon cycle model. Our results provide support for the hypothesis that a break up of Southern Ocean stratification and invigorated deep ocean ventilation were the dominant drivers for the early deglacial CO2 rise of ~35 ppm between the Last Glacial Maximum and 14.6 ka BP. Another rise of 10 ppm until the end of the Holocene is attributed to carbonate compensation responding to the early deglacial change in ocean circulation. Our reasoning is based on a multi-proxy analysis which indicates that an acceleration of deep ocean ventilation during early deglaciation is not only consistent with recorded atmospheric CO2 but also with the reconstructed opal sedimentation peak in the Southern Ocean at around 16 ka BP, the record of atmospheric δ13CCO2, and the reconstructed changes in the Pacific CaCO3 saturation horizon.

scholarly journals Simulating Southern Hemisphere extra-tropical climate variability with an idealised coupled atmosphere-ocean model

2012 ◽  
Vol 5 (5) ◽  
pp. 1161-1175 ◽  
Author(s):  
H. Kurzke ◽  
M. V. Kurgansky ◽  
K. Dethloff ◽  
D. Handorf ◽  
S. Erxleben ◽  
...  
Keyword(s):  
Climate Variability ◽  
Southern Hemisphere ◽  
Ocean Circulation ◽  
Coupled Model ◽  
Circulation Model ◽  
Horizontal Resolution ◽  
Global Ocean ◽  
Simplified Model ◽  
Cmip5 Models ◽  
Decadal Climate Variability

Abstract. A quasi-geostrophic model of Southern Hemisphere's wintertime atmospheric circulation with horizontal resolution T21 has been coupled to a global ocean circulation model with a resolution of 2° × 2° and simplified physics. This simplified coupled model reproduces qualitatively some features of the first and the second EOF of atmospheric 833 hPa geopotential height in accordance with NCEP data. The variability patterns of the simplified coupled model have been compared with variability patterns simulated by four complex state-of-the-art coupled CMIP5 models. The first EOF of the simplified model is too zonal and does not reproduce the right position of the centre of action over the Pacific Ocean and its extension to the tropics. The agreement in the second EOF between the simplified and the CMIP5 models is better. The total variance of the simplified model is weaker than the observational variance and those of the CMIP5 models. The transport properties of the Southern Ocean circulation are in qualitative accord with observations. The simplified model exhibits skill in reproducing essential features of decadal and multi-decadal climate variability in the extratropical Southern Hemisphere. Notably, 800 yr long coupled model simulations reveal sea surface temperature fluctuations on the timescale of several decades in the Antarctic Circumpolar Current region.

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