scholarly journals Genomic analyses of Northern snakehead (Channa argus) populations in North America

PeerJ ◽  
2018 ◽  
Vol 6 ◽  
pp. e4581 ◽  
Author(s):  
Carlee A. Resh ◽  
Matthew P. Galaska ◽  
Andrew R. Mahon

Background The introduction of northern snakehead (Channa argus; Anabantiformes: Channidae) and their subsequent expansion is one of many problematic biological invasions in the United States. This harmful aquatic invasive species has become established in various parts of the eastern United States, including the Potomac River basin, and has recently become established in the Mississippi River basin in Arkansas. Effective management of C. argus and prevention of its further spread depends upon knowledge of current population structure in the United States. Methods Novel methods for invasive species using whole genomic scans provide unprecedented levels of data, which are able to investigate fine scale differences between and within populations of organisms. In this study, we utilize 2b-RAD genomic sequencing to recover 1,007 single-nucleotide polymorphism (SNP) loci from genomic DNA extracted from 165 C. argus individuals: 147 individuals sampled along the East Coast of the United States and 18 individuals sampled throughout Arkansas. Results Analysis of those SNP loci help to resolve existing population structure and recover five genetically distinct populations of C. argus in the United States. Additionally, information from the SNP loci enable us to begin to calculate the long-term effective population size ranges of this harmful aquatic invasive species. We estimate long-term Ne to be 1,840,000–18,400,000 for the Upper Hudson River basin, 4,537,500–45,375,000 for the Lower Hudson River basin, 3,422,500–34,225,000 for the Potomac River basin, 2,715,000–7,150,000 for Philadelphia, and 2,580,000–25,800,000 for Arkansas populations. Discussion and Conclusions This work provides evidence for the presence of more genetic populations than previously estimated and estimates population size, showing the invasive potential of C. argus in the United States. The valuable information gained from this study will allow effective management of the existing populations to avoid expansion and possibly enable future eradication efforts.

2016 ◽  
Vol 20 (7) ◽  
pp. 2649-2667 ◽  
Author(s):  
Firas Saleh ◽  
Venkatsundar Ramaswamy ◽  
Nickitas Georgas ◽  
Alan F. Blumberg ◽  
Julie Pullen

Abstract. This paper investigates the uncertainties in hourly streamflow ensemble forecasts for an extreme hydrological event using a hydrological model forced with short-range ensemble weather prediction models. A state-of-the art, automated, short-term hydrologic prediction framework was implemented using GIS and a regional scale hydrological model (HEC-HMS). The hydrologic framework was applied to the Hudson River basin ( ∼  36 000 km2) in the United States using gridded precipitation data from the National Centers for Environmental Prediction (NCEP) North American Regional Reanalysis (NARR) and was validated against streamflow observations from the United States Geologic Survey (USGS). Finally, 21 precipitation ensemble members of the latest Global Ensemble Forecast System (GEFS/R) were forced into HEC-HMS to generate a retrospective streamflow ensemble forecast for an extreme hydrological event, Hurricane Irene. The work shows that ensemble stream discharge forecasts provide improved predictions and useful information about associated uncertainties, thus improving the assessment of risks when compared with deterministic forecasts. The uncertainties in weather inputs may result in false warnings and missed river flooding events, reducing the potential to effectively mitigate flood damage. The findings demonstrate how errors in the ensemble median streamflow forecast and time of peak, as well as the ensemble spread (uncertainty) are reduced 48 h pre-event by utilizing the ensemble framework. The methodology and implications of this work benefit efforts of short-term streamflow forecasts at regional scales, notably regarding the peak timing of an extreme hydrologic event when combined with a flood threshold exceedance diagram. Although the modeling framework was implemented on the Hudson River basin, it is flexible and applicable in other parts of the world where atmospheric reanalysis products and streamflow data are available.


2021 ◽  
Vol 9 ◽  
Author(s):  
Carlee A. Resh ◽  
Matthew P. Galaska ◽  
Kasey C. Benesh ◽  
Jonathan P. A. Gardner ◽  
Kai-Jian Wei ◽  
...  

The introduction and subsequent range expansion of the Northern snakehead (Channa argus: Channidae, Anabantiformes) is one of a growing number of problematic biological invasions in the United States. This harmful aquatic invasive species is a predatory freshwater fish native to northeastern Asia that, following deliberate introduction, has established itself in multiple water basins in the eastern United States, as well as expanding its range into the Midwest. Previous work assessed the population structure and estimated the long-term effective population sizes of the populations present in the United States, but the source of the initial introduction(s) to the U.S. remains unidentified. Building on earlier work, we used whole genome scans (2b-RAD genomic sequencing) to analyze single nucleotide polymorphisms (SNPs) from C. argus to screen the genomes of these invasive fish from United States waters and from three sites in their native range in China. We recovered 2,822 SNP loci from genomic DNA extracted from 164 fish sampled from the eastern United States and Arkansas (Mississippi River basin), plus 30 fish sampled from three regions of the Yangtze River basin in China (n = 10 individuals per basin). Our results provide evidence supporting the Yangtze River basin in China, specifically the Bohu and/or Liangzi lakes, is a likely source of the C. argus introductions in multiple regions of the U.S., including the Lower Hudson River basin, Upper Hudson River basin and Philadelphia (Lower Delaware River basin). This information, in conjunction with additional sampling from the native range, will help to determine the source(s) of introduction for the other U.S. populations. Additionally, this work will provide valuable information for management to help prevent and manage future introductions into United States waterways, as well as aid in the development of more targeted strategies to regulate established populations and inhibit further spread.


Land ◽  
2021 ◽  
Vol 10 (5) ◽  
pp. 536
Author(s):  
Jordan Dornbierer ◽  
Steve Wika ◽  
Charles Robison ◽  
Gregory Rouze ◽  
Terry Sohl

Land system change has been identified as one of four major Earth system processes where change has passed a destabilizing threshold. A historical record of landscape change is required to understand the impacts change has had on human and natural systems, while scenarios of future landscape change are required to facilitate planning and mitigation efforts. A methodology for modeling long-term historical and future landscape change was applied in the Delaware River Basin of the United States. A parcel-based modeling framework was used to reconstruct historical landscapes back to 1680, parameterized with a variety of spatial and nonspatial historical datasets. Similarly, scenarios of future landscape change were modeled for multiple scenarios out to 2100. Results demonstrate the ability to represent historical land cover proportions and general patterns at broad spatial scales and model multiple potential future landscape trajectories. The resulting land cover collection provides consistent data from 1680 through 2100, at a 30-m spatial resolution, 10-year intervals, and high thematic resolution. The data are consistent with the spatial and thematic characteristics of widely used national-scale land cover datasets, facilitating use within existing land management and research workflows. The methodology demonstrated in the Delaware River Basin is extensible and scalable, with potential applications at national scales for the United States.


2006 ◽  
Vol 35 (1) ◽  
pp. 195-208 ◽  
Author(s):  
Sabrina J. Lovell ◽  
Susan F. Stone ◽  
Linda Fernandez

Invasive species are a growing threat in the United States, causing losses in biodiversity, changes in ecosystems, and impacts on economic enterprises such as agriculture, fisheries, and international trade. The costs of preventing and controlling invasive species are not well understood or documented, but estimates indicate that the costs are quite high. The costs of aquatic invasive species are even less well understood than those for terrestrial species. A systematic approach is needed to develop a consistent method to estimate the national costs of aquatic invasives. This review of the economic literature on aquatic invasive species is the first stage in the development of that estimate. We reviewed over sixty sources and include both empirical papers that present cost estimates as well as theoretical papers on preventing and mitigating the impacts of aquatic invasive species. Species-specific estimates are included for both animals and plants.


2012 ◽  
Vol 48 (2) ◽  
Author(s):  
Stephen Fuller ◽  
Frank Millerd ◽  
Francisco Fraire ◽  
Maria do Carmo Alfonso

The St. Lawrence Seaway links central regions of North America to the Atlantic Ocean via the Great Lakes navigation system. Harmful non-indigenous aquatic invasive species have increasingly been introduced into the Great Lakes largely through the ballast water of inbound ships involved in international commerce. A variety of solutions have been proposed, with some advocating closure of the St. Lawrence Seaway to international shipping. Historically, it was an important artery linking grain surplus regions in Canada and the United States with international markets. However, during the past two decades the Seaway's role has diminished as a grain transport artery. The objective of this paper is to develop an increased understanding of this decline and to offer thoughts regarding the likely reversal of the forces that may have caused it. Analysis indicates declining imports by selected world regions and domestic transportation legislation is central to the decline.


2020 ◽  
Vol 34 (5) ◽  
pp. 776-778
Author(s):  
Josh R. Weaver ◽  
Philip J. Brown ◽  
Lambert B. McCarty ◽  
Nathaniel Gambrell

AbstractJapanese stiltgrass is regarded as one of the most troublesome invasive species in the United States. It is commonly found invading forested areas; however, more recently it has been noted to be invading golf course roughs and out-of-play areas. The purpose of this study was to evaluate POST herbicide control of Japanese stiltgrass in golf course and highly maintained turfgrass facilities. None of the treatments provided >80% Japanese stiltgrass control 2 wk after treatment (WAT). At 4 WAT >80% Japanese stiltgrass control was observed with MSMA, MSMA + metribuzin, amicarbazone, and sethoxydim, whereas metsulfuron, pinoxaden, and imazapic provided minimum control. By 8 WAT, MSMA, MSMA + metribuzin, amicarbazone, and sethoxydim provided >98% control, whereas quinclorac, metsulfuron, pinoxaden, and imazapic provided no visible control. Thiencarbazone-methyl + foramsulfuron + halosulfuron-methyl, and sulfentrazone provided limited (≤60%) control. This study indicates that POST control of Japanese stiltgrass can be achieved with MSMA, MSMA + metribuzin, amicarbazone, and sethoxydim. Future research should include long-term control over multiple growing seasons, repeat applications of herbicides, and evaluation of herbicides in combination for increased and longer-term Japanese stiltgrass control.


Author(s):  
Deborah C. Hayes ◽  
Becky K. Kerns ◽  
Toral Patel-Weynand ◽  
Deborah M. Finch

AbstractInvasive species are a historical, long-term, and continually growing threat to the ecology, economy, and infrastructure of the United States. Widely recognized as one of the most serious threats to the health, sustainability, and productivity of native ecosystems, invasive species issues have commonly been viewed as problems specific to Federal, State, and private landowners. However, it is increasingly apparent that the impacts from these species are all encompassing, affecting ecosystem processes in addition to the economics of land management, public and private infrastructure, the energy sector, international trade, cultural practices, and many other sectors in the United States.


Author(s):  
Melissa A. Pierce

In countries other than the United States, the study and practice of speech-language pathology is little known or nonexistent. Recognition of professionals in the field is minimal. Speech-language pathologists in countries where speech-language pathology is a widely recognized and respected profession often seek to share their expertise in places where little support is available for individuals with communication disorders. The Peace Corps offers a unique, long-term volunteer opportunity to people with a variety of backgrounds, including speech-language pathologists. Though Peace Corps programs do not specifically focus on speech-language pathology, many are easily adapted to the profession because they support populations of people with disabilities. This article describes how the needs of local children with communication disorders are readily addressed by a Special Education Peace Corps volunteer.


Author(s):  
Federico Varese

Organized crime is spreading like a global virus as mobs take advantage of open borders to establish local franchises at will. That at least is the fear, inspired by stories of Russian mobsters in New York, Chinese triads in London, and Italian mafias throughout the West. As this book explains, the truth is more complicated. The author has spent years researching mafia groups in Italy, Russia, the United States, and China, and argues that mafiosi often find themselves abroad against their will, rather than through a strategic plan to colonize new territories. Once there, they do not always succeed in establishing themselves. The book spells out the conditions that lead to their long-term success, namely sudden market expansion that is neither exploited by local rivals nor blocked by authorities. Ultimately the inability of the state to govern economic transformations gives mafias their opportunity. In a series of matched comparisons, the book charts the attempts of the Calabrese 'Ndrangheta to move to the north of Italy, and shows how the Sicilian mafia expanded to early twentieth-century New York, but failed around the same time to find a niche in Argentina. The book explains why the Russian mafia failed to penetrate Rome but succeeded in Hungary. A pioneering chapter on China examines the challenges that triads from Taiwan and Hong Kong find in branching out to the mainland. This book is both a compelling read and a sober assessment of the risks posed by globalization and immigration for the spread of mafias.


2020 ◽  
Author(s):  
Joseph Matthews ◽  
Madhu Pandey

Propeller planes and small engine aircraft around the United States, legally utilize leaded aviation gasoline. The purpose of this experiment was to collect suspended particulate matter from a university campus, directly below an airport’s arriving flight path’s descent line, and to analyze lead content suspended in the air. Two collection sets of three separate samples were collected on six separate days, one set in July of 2018 and the second set in January 2019.


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