Transcriptomic, Proteomic, and Metabolic Profiles of Catalpa bungei Tension Wood Reveal New Insight Into Lignin Biosynthesis Involving Transcription Factor Regulation

Lignin is a complex polymer in plant cell walls whose proportion is second only to that of cellulose and plays an important role in the mechanical properties of wood and stress resistance of plants. Here, we induced tension wood (TW) formation in Catalpa bungei by artificial bending and analyzed the lignin metabolism of the TW. LC-MS analysis showed that a significantly higher content of coniferyl aldehyde was observed in the TW cell wall than in the opposite wood (OW) and normal wood (NW) cell walls. TW had significantly lower contents of coniferyl alcohol than OW and NW. Raman spectroscopy results indicated that TW had lower total lignin than OW and NW. The transcription and translation levels of most of the differentially expressed genes (DEGs) involved in lignin monomer biosynthesis indicated upregulation in TW/OW and TW/NW. We found no significant difference in the transcription levels of three collision gases (CADs) between TW and OW or between NW, but their translation levels were significantly downregulated in TW, suggesting post-transcriptional control for CAD. We predicted and analyzed transcription factors that could target DEGs involved in lignin monomer biosynthesis in TW. Based on the analysis of the relationships of targeting and coexpression, we found that NAC (evm.model.group1.695) could potentially target 4CLs and CCoAOMT, that HD-Zip (evm.model.group7.1157) had potential targeting relationships with CCoAOMT, F5H, and CCR, and that their expression levels were significantly positive. It is speculated that the upregulation of NAC and HD-ZIP transcription factors activates the expression of downstream target genes, which leads to a significant increase in coniferyl aldehyde in TW. However, the decrease in total lignin in TW may be caused by the significant downregulation of CAD translation and the significant decrease in precursors (coniferyl alcohol). Whether the expression of CAD genes is regulated by post-transcriptional control and affects TW lignin metabolism needs further study.

Chemical and Microbial Analysis of Bedding Material (Wood Shavings) Treated with Graded Levels of Aluminium Sulphate (Alum)

The study was carried out at the poultry unit of the Department of Animal Science teaching and research farm, Ahmadu Bello University, Zaria to determine the chemical and microbial analysis of poultry litter (wood shavings) treated with graded levels of alum. The alum used was obtained from the Sabon-gari market in Zaria, Kaduna State. The rates of alum application (prior to keeping the birds) was as follows: T1 control (normal wood shavings with no alum), T2 (5% alum by kg weight of wood shavings), T3 (10% alum by kg weight of wood shavings) and T4 (15% alum by kg weight of wood shavings). Five sets of litter samples were obtained fortnightly from each pen from different locations i.e. the four corners and center from which the microbial load, pH, total nitrogen (N), soluble reactive phosphorus, VFA and NH4+ concentration were measured. The result shows significantly (P<0.05) lower pH value in all the alum treated wood shavings groups (5%, 10% and 15% alum treated wood shavings) compared to the control. The result showed that significantly (P<0.05) lower total volatile fatty acid level was obtained in all the alum treated wood shavings groups (5%, 10% and 15% alum treated wood shavings) compared to the control untreated wood shaving group. The results showed a decrease in total bacteria, E. coli and Salmonella spp. load in alum treated wood shavings groups (5%, 10% and 15% alum treated wood shavings) compared to the control, while mould and yeast load was increased in all the alum treated wood shavings groups (5%, 10% and 15% alum treated wood shavings) compared to the control. The study conclude that treating wood shavings with alum can reduce microbial load of the litter, hence improve health and reduce mortality. Treating wood shavings with alum tends reduce the microbial load of the litter.

RNA Sequencing Reveals Phenylpropanoid Biosynthesis Genes and Transcription Factors for Hevea brasiliensis Reaction Wood Formation

Given the importance of wood in many industrial applications, much research has focused on wood formation, especially lignin biosynthesis. However, the mechanisms governing the regulation of lignin biosynthesis in the rubber tree (Hevea brasiliensis) remain to be elucidated. Here, we gained insight into the mechanisms of rubber tree lignin biosynthesis using reaction wood (wood with abnormal tissue structure induced by gravity or artificial mechanical treatment) as an experimental model. We performed transcriptome analysis of rubber tree mature xylem from tension wood (TW), opposite wood (OW), and normal wood (NW) using RNA sequencing (RNA-seq). A total of 214, 1,280, and 32 differentially expressed genes (DEGs) were identified in TW vs. NW, OW vs. NW, and TW vs. OW, respectively. GO and KEGG enrichment analysis of DEGs from different comparison groups showed that zeatin biosynthesis, plant hormone signal transduction, phenylpropanoid biosynthesis, and plant–pathogen interaction pathways may play important roles in reaction wood formation. Sixteen transcripts involved in phenylpropanoid biosynthesis and 129 transcripts encoding transcription factors (TFs) were used to construct a TF–gene regulatory network for rubber tree lignin biosynthesis. Among them, MYB, C2H2, and NAC TFs could regulate all the DEGs involved in phenylpropanoid biosynthesis. Overall, this study identified candidate genes and TFs likely involved in phenylpropanoid biosynthesis and provides novel insights into the mechanisms regulating rubber tree lignin biosynthesis.

Wood Formation under Severe Drought Invokes Adjustment of the Hormonal and Transcriptional Landscape in Poplar

Drought is a severe environmental stress that exerts negative effects on plant growth. In trees, drought leads to reduced secondary growth and altered wood anatomy. The mechanisms underlying wood stress adaptation are not well understood. Here, we investigated the physiological, anatomical, hormonal, and transcriptional responses of poplar to strong drought. Drought-stressed xylem was characterized by higher vessel frequencies, smaller vessel lumina, and thicker secondary fiber cell walls. These changes were accompanied by strong increases in abscisic acid (ABA) and antagonistic changes in salicylic acid in wood. Transcriptional evidence supported ABA biosynthesis and signaling in wood. Since ABA signaling activates the fiber-thickening factor NST1, we expected upregulation of the secondary cell wall (SCW) cascade under stress. By contrast, transcription factors and biosynthesis genes for SCW formation were down-regulated, whereas a small set of cellulose synthase-like genes and a huge array of genes involved in cell wall modification were up-regulated in drought-stressed wood. Therefore, we suggest that ABA signaling monitors normal SCW biosynthesis and that drought causes a switch from normal to “stress wood” formation recruiting a dedicated set of genes for cell wall biosynthesis and remodeling. This proposition implies that drought-induced changes in cell wall properties underlie regulatory mechanisms distinct from those of normal wood.

In situ observation of shrinking and swelling of normal and compression Chinese fir wood at the tissue, cell and cell wall level

The shrinking and swelling of wood due to moisture changes are intrinsic material properties that control and limit the use of wood in many applications. Herein, hygroscopic deformations of normal and compression wood of Chinese fir (Cunninghamia lanceolata [Lamb.] Hook.) were measured during desorption and absorption processes. The dimensional changes were observed in situ by an environmental scanning electron microscope and analyzed at different hierarchical levels (tissue, cell and cell wall). The relationship between moisture variation and hygroscopic deformation was measured. During initial desorption periods from 95 to 90 or 75% RH, an expansion of the lumen and a shrinkage of the cell wall were observed, revealing a non-uniform and directional deformation of single wood cells. The variation of shrinking or swelling at different hierarchical levels (tissue, cell and cell wall) indicates that the hygroscopic middle lamella plays a role in the deformation at the tissue level. Higher microfibril angles and helical cavities on the cell wall in compression wood correlate with a lower shrinking/swelling ratio. Normal wood showed a more pronounced swelling hysteresis than compression wood, while the sorption hysteresis was almost the same for both wood types. This finding is helpful to elucidate effects of micro- and ultrastructure on sorption. The present findings suggest that the sophisticated system of wood has the abilities to adjust the hygroscopic deformations by fine-tuning its hierarchical structures.

Evaluation of Wood Quality Traits in Salix viminalis Useful for Biofuels: Characterization and Method Development

Salix (willow) is a well-known coppice plant that has been used as a source for bioenergy for decades. With recent developments in changing from a fossil-based to a circular bioeconomy, greater interest has been orientated towards willow as a potential source of biomass for transport biofuels. This has created increasing interest for breeding strategies to produce interesting genotypic and phenotypic traits in different willow varieties. In the present study, 326 genetically distinct clones and several commercial varieties of S. viminalis were analyzed using complementary approaches including density, chemical, image, histochemical, and morphometric analyses. A systematic approach was adopted whereby the basal regions of harvested stems were separated and used in all studies to aid comparisons. Density analyses were performed on all clone individuals, and from the results, 20 individual plants representing 19 clones were selected for the more in-depth analyses (chemical, image analysis, histochemical, and morphometric). The absolute dry density of the clones selected varied between ca. 300 and 660 kg/m3 with less variation seen in the commercial S. viminalis varieties (ca. 450–520 kg/m3). Selected clones for chemical analysis showed the largest variation in glucose (47.3–60.1%; i.e., cellulose) and total sugar content, which ranged between ca. 61 and 77% and only ca. 16 and 22% for lignin. Image analyses of entire basal stem sections showed presence of tension wood in variable amounts (ca. 7–39%) with characteristic G-fibers containing cellulose-rich and non-lignified gelatinous layers. Several of the clones showing prominent tension wood also showed high glucose and total sugar content as well as low lignin levels. A morphometric approach using an optical fiber analyzer (OFA) for analyzing 1000 s (minimum 100,000 particles) of macerated fibers was evaluated as a convenient tool for determining the presence of tension wood in stem samples. Statistical analyses showed that for S. viminalis stems of the same density and thickness, the OFA approach could separate tension wood fibers from normal wood fibers by length but not fiber width. Results emphasized considerable variability between the clones in the physical and chemical approaches adopted, but that a common aspect for all clones was the occurrence of tension wood. Since tension wood with G-fibers and cellulose-rich G-layers represents an increased source of readily available non-recalcitrant cellulose for biofuels, S. viminalis breeding programs should be orientated towards determining factors for its enhancement.

Ciri Makroskopis, Kekerasan dan Berat Jenis Fosil Kayu Asal Desa Purwajaya Kutai Kartanegara

The results showed that macroscopically the studied wood fossils had brick red, gray, yellow, brown, and black in the first sample (FKA), and the second sample (FKB) had white, gray, and light brown colors, which this color difference was probably due to the cells being mixed with other inorganic elements even though they were found in adjacent locations. Another observation of the macroscopic features of the two samples indicated that cells were still obviously visible as on normal wood, such as pores, rays, and axial intercellular canal. Based on the characteristics of AIC, it was found to have general features that were often found in several types of wood in the Dipterocarpaceae family. The results of measuring the hardness value, the two fossil samples have the same hardness value, namely 4 Mohs scale. For the meantime, the specific gravity of the FKA and FKB samples were 2.54 and 2.35, respectively.

Comparison of tension wood and normal wood for oxidative nanofibrillation and network characteristics

Cellulose nanofibrils (CNFs) are top-down nanomaterials obtainable from abundant lignocelluloses. Despite recent advances in processing technologies, the effects of variations in the lignocellulose structure and composition on CNF isolation and properties are poorly understood. In this study, we compared the isolation of CNFs from tension wood (TW) and normal wood (NW) from Populus tremula (aspen). The TW has a higher cellulose content, native cellulose fibrils with a larger crystalline diameter, and less lignin than the NW, making it an interesting material for CNF isolation. The wood powders were oxidized directly by 2,2,6,6-tetramethylpiperidin-1-oxyl, and the morphology and mechanical behaviors of the nanofibril suspensions and networks were characterized. The TW was more difficult to fibrillate by both chemical and mechanical means. Larger nanofibrils (5–10 nm) composed of 1.2 nm structures were present in the TW CNFs, whereas the NW samples contained more of thin (1.6 nm) structures, which also comprised 77% of the solid yield compared to the 33% for TW. This difference was reflected in the TW CNF networks as decreased transmittance (15% vs. 50%), higher degree of crystallinity (85.9% vs. 78.0%), doubled toughness (11 MJ/m3) and higher elongation at break (12%) compared to NW. The difference was ascribed to greater preservation of the hierarchical, more crystalline microfibril structure, combined with a more cellulose-rich network (84% vs. 70%). This knowledge of the processing, structure, and properties of CNFs can facilitate the breeding and design of wood feedstocks to meet the increasing demand for nanoscale renewable materials. Graphic abstract

Effect of thermo-hydro-mechanical densification on the wood properties of three short-rotation forest species in Costa Rica

Alnus acuminata, Vochysia ferruginea, and Vochysia guatemalensis are three low-density wood species used for reforestation in Costa Rica. The goal of this work was to study a thermo-hydro-mechanical densification process and test the characteristics of densified wood of these species. Twelve densifying treatments based on temperature, compression time, and use/no use of steam were tested. The variables of the densification process and the properties of the densified wood were determined. The results showed that the densification percentage was over 80% for wood of A. acuminata and over 70% for wood of V. ferruginea and V. guatemalensis. In the three species, the densification process was influenced by initial density. The influence of temperature during the densification process affected the heating rate and color change. An increase in the modulus of elasticity and modulus of rupture in static bending and in the hardness of the densified wood relative to the normal wood was observed, as well as a clear positive correlation of the properties with final density and maximum load, the latter being highly correlated with initial density. This showed that initial density was significant in the densification process and affects wood properties.

Hygrothermal recovery of compression wood in relation to DMSO swelling and drying shrinkage

To understand the irreversible dimensional changes caused by hygrothermal treatment of green wood, i.e. hygrothermal recovery (HTR), green hinoki compression wood (CW) and normal wood (NW) were hygrothermally (HT) treated in water at 100°C for 120 min and their HTR strains were determined. The specimens were then swollen using dimethyl sulfoxide (DMSO) and then completely dried after solvent exchange with water at room temperature. Their HTR strains were then compared with their DMSO swelling and drying shrinkage strains. The volumetric HTR strains in the CW were about twice as large as those in the NW. Moreover, the microfibril angle (MFA) was found to be an important factor for controlling the HTR intensity. A clear commonality between the HTR behavior and both DMSO swelling and drying shrinkage behavior was identified, which indicates that HTR is caused by volumetric changes in the matrix substances. HTR has been defined as a phenomenon due to the release of locked-in growth stress when a wood specimen is HT treated. To determine whether DMSO treatment has a similar effect as hygrothermal treatment, both HT-untreated and HT-treated specimens were swollen using DMSO, and their dimensional changes during and after DMSO treatment were compared. The results showed that DMSO treatment is a possible alternative for releasing the locked-in growth stress.