Genetic Diversity and Population Structure in Two Captive Rhesus Monkey (Macaca Mulatta) Populations as Revealed by Microsatellite Markers

Rhesus monkeyss (Macaca mulatta) are extensively used in the field of medical and psychological research as valuable experimental animals. 15 polymorphic chromosome-specific microsatellite markers were used to analyze the genetic diversity and population structure in two captive individuals. A total of 155 alleles were identified, with the number of alleles per locus ranging from 7 to 15, giving an average number of 10.3 alleles per locus. The mean number of effective alleles (Ne), observed heterozygosity (Ho), expected heterozygosity (He), and the polymorphism information content (PIC) were 5.602, 0.7297, 0.8016, and 0.7716, respectively. The populations HS and XJ shared partial common alleles, however, the remaining in XJ were not detected. Structure analysis indicated that two populations belong to three genetic lineages. AMOVA showed that the genetic variance was 91% among individuals, while it was 9% among populations, respectively. The bottleneck effect analysis revealed that the two captive populations were in accordance with mutation-drift equilibrium. In the comparison of the genetic parameters and structure between the HS and XJ, we speculated that the genetic diversity was higher, which may be attributed to the exchange of germplasm resources and the input of new individuals from wild populations.

MODELING OF OSCILLATORY AND ROTARY TRAJECTORIES OF ELECTRONS IN GRADIENT MAGNETIC FIELD MAGNETRON GUN

The motion of electrons in cylindrical magnetic field with variable strength along the axis is considered. The formation of a beam with energy of 55 keV in the longitudinal direction during its transport in solenoidal magnetic field with large gradient has been studied. The bifurcation regimes of the dynamics of particles during their move-ment along the transport axis both forward to the target and back to the cathode region are considered. The operat-ing modes of the gun are obtained, in which the particle experiences the "bottleneck" effect and returns to the cath-ode region. It is shown that for given electron energy and fixed magnetic field, the parameter that determines the reflection of the particle is the polar angle of entry with respect to the axis of the cylindrical magnetic field. The re-sults of numerical simulation on the motion of the electron flow are presented.

Evidence of a Recent Bottleneck in Plasmodium falciparum Populations on the Honduran–Nicaraguan Border

The countries of Central America and the island of Hispaniola have set the goal of eliminating malaria in less than a decade. Although efforts to reduce the malaria burden in the region have been successful, there has been an alarming increase in cases in the Nicaraguan Moskitia since 2014. The continuous decrease in cases between 2000 and 2014, followed by a rapid expansion from 2015 to the present, has generated a potential bottleneck effect in the populations of Plasmodium spp. Consequently, this study aimed to evaluate the genetic diversity of P. falciparum and the decrease in allelic richness in this population. The polymorphic regions of the pfmsp-1 and pfmsp-2 genes of patients with falciparum malaria from Honduras and Nicaragua were analyzed using nested PCR and sequencing. Most of the samples were classified into the K1 allelic subfamily of the pfmsp-1 gene and into the 3D7 subfamily of the pfmsp-2 gene. Despite the low genetic diversity found, more than half of the samples presented a polyclonal K1/RO33 haplotype. No sequence polymorphisms were found within each allelic subfamily. This study describes a notable decrease in the genetic diversity of P. falciparum in the Moskitia region after a bottleneck phenomenon. These results will be useful for future epidemiological investigations and the monitoring of malaria transmission in Central America.

Connexins evolved after early chordates lost innexin diversity

Gap junction channels are formed by two unrelated protein families. Non-chordates use the primordial innexins, while chordates use connexins that superseded the gap junction function of innexins. Chordates retained innexin-homologs, but N-glycosylation prevents them from forming gap junctions. It is puzzling why chordates seem to exclusively use the new gap junction protein and why no chordates should exist that use non-glycosylated innexins to form gap junctions. Here, we identified glycosylation sites of 2270 innexins from 152 non-chordate and 274 chordate species. Among all chordates, we found not a single innexin without glycosylation sites. Surprisingly, the glycosylation motif is also widespread among non-chordate innexins indicating that glycosylated innexins are not a novelty of chordates. In addition, we discovered a loss of innexin diversity during the early chordate evolution. Most importantly, the most basal living chordates, which lack connexins, exclusively possess innexins with glycosylation sites. A bottleneck effect might thus explain why connexins have become the only protein used to form chordate gap junctions.

Yb-ASE Suppression in Single-Frequency Hybrid Double Cladding Erbium–Ytterbium Co-Doped Fiber Amplifier with SMS Structure

A hybrid double cladding erbium–ytterbium co-doped fiber (EYDF) amplifier with a single-mode-multimode-single-mode (SMS) active fiber is demonstrated in this study. The hybrid gain fiber with an SMS structure is composed of two kinds of EYDFs with 6 and 12 μm core diameters. The transmission spectra of the SMS fiber structure were theoretically analyzed and the simulation results indicated that the maximum loss in the 1~1.1 μm band where the Yb-band amplified spontaneous emission (Yb-ASE) located, was much larger than that of the 1.5-μm band because of the wavelength difference. The power performance and spectra properties of the hybrid fiber amplifier were theoretically and experimentally analyzed and compared with a typical uniform fiber amplifier under the same conditions. The experimental results demonstrated that this hybrid fiber amplifier can suppress the Yb-ASE by over 12 dB and increase the slope efficiency by more than 2%, but the ASE in the 1.5-μm band increases by 2~3 dB. This work provides a possible method to enable EYDF amplifiers to suppress the Yb-ASE and overcome the pump bottleneck effect.

Mechanisms that may lead to high genetic divergence and to the invasive success of tall fleabane (Conyza sumatrensis; Asteraceae)

Tall fleabane [Conyza sumatrensis (Retz.) E. Walker] is commonly invasive in agricultural fields, reducing yield in various infested crops. The current study investigates the genetic diversity within and between a significant number of invasive C. sumatrensis biotypes in soybean fields in southern, southeastern, and midwestern Brazil, using microsatellites as molecular markers. High and low observed and expected heterozygosity estimated in microsatellite loci supported our hypothesis that different levels of genetic diversity may be detected within biotypes from different invaded fields. Analysis of a significant number of biotypes in several fields showed high and low genetic diversity not associated with geographic distribution, bottleneck effect, or susceptibility to glyphosate. A deficit of heterozygous plants, high genetic divergence, and moderate allelic transference were also observed. Allelic fixation was different in the different biotypes. The bottleneck effect was seen in biotypes with reduced genetic diversity and in biotypes with the highest genetic diversity. Data on genetic diversity, bottleneck effect, and glyphosate resistance showed contrasts in biotypes from nearby invaded fields. Our study showed different genetic diversity levels in biotypes from invaded areas under the same climatic conditions.

MLVA25-Typed Yersinia pestis ssp. central asiatica biovar altaica Genotype Structure in Gorno-Altai Mountain Natural Plague Focus

The aim of the work was to study the genetic diversity and spatial-temporal genotype structure of Yersinia pestis subspecies central asiatica biovar altaica in the Gorno-Altai natural plague focus, using MLVA25-typing.Materials and methods. MLVA25-typing of 330 strains of Y. pestis ssp. central asiatica bv. altaica, isolated in the Gorno-Altai mountain natural plague focus during 1961–2015 was carried out. The phylogenetic tree was constructed with the help of UPGMA and MST algorithms.Results and discussion. The analyzed strains have been differentiated into 34 MLVA types based on cluster analysis. The formed major groups of strains show pronounced spatial confinedness. Three chorological groupings of the plague agent with peculiar genotype characteristics have been identified. Each of the groupings is circulating among the main carrier (Ochotona pallasi) population and within the limits of the similarly-named mesofocus, respectively (Ulandryksky, Tarkhatynsky and Kuraisky). MLVA25 structure of Y. pestis in Ulandryksky and Kuraisky mezofoci show stability over time; there are no significant changes from the time of their first detection in 1961 and 1999, respectively. The dramatic changes in MLVA25 structure are observed in Tarkhatynsky mesofocus, which is known from 1972. Mass expanding of the MLVA25 types which were very rare before took place there from the beginning of 1990-s, along with elimination of the types absolutely dominant up to 1980s. Most likely the changing of dominating genotypes is attributable to the bottleneck effect, arising from the sharp decline of the focal epizootic activity in the mid 1980s.

Molecular markers confirm the presence of the alien snowflake coral Carijoa riisei (Octocorallia: Alcyonacea) in Cabo Verde Islands (Central-East Atlantic).

The snowflake coral Carijoa riisei is one of the most invasive and successfully adapting species in the coastal marine environment. This species can disperse through ballast waters or fouling on the hull of ships, which allows it to expand very quickly to areas where it is not native. Recently C. riisei was identified in the Porto Grande Bay in São Vicente island in Cabo Verde Islands. We analysed mitochondrial and nuclear DNA sequences from specimens collected at this locality to determine the potential origin of this invasion. Lack of genetic variation in both mitochondrial and nuclear genes suggest a very recent invasion (bottleneck effect) but did not permit to establish its origin with total confidence.