Genome-wide association study reveals the genetic architecture of root hair length in maize

Background Root hair, a special type of tubular-shaped cell, outgrows from root epidermal cell and plays important roles in the acquisition of nutrients and water, as well as interactions with biotic and abiotic stress. Although many genes involved in root hair development have been identified, genetic basis of natural variation in root hair growth has never been explored. Results Here, we utilized a maize association panel including 281 inbred lines with tropical, subtropical, and temperate origins to decipher the phenotypic diversity and genetic basis of root hair length. We demonstrated significant associations of root hair length with many metabolic pathways and other agronomic traits. Combining root hair phenotypes with 1.25 million single nucleotide polymorphisms (SNPs) via genome-wide association study (GWAS) revealed several candidate genes implicated in cellular signaling, polar growth, disease resistance and various metabolic pathways. Conclusions These results illustrate the genetic basis of root hair length in maize, offering a list of candidate genes predictably contributing to root hair growth, which are invaluable resource for the future functional investigation.

Abscisic Acid Mediates Drought-Enhanced Rhizosheath Formation in Tomato

The rhizosheath, commonly defined as soil adhering to the root surface, may confer drought tolerance in various crop species by enhancing access to water and nutrients under drying stress conditions. Since the role of phytohormones in establishing this trait remains largely unexplored, we investigated the role of ABA in rhizosheath formation of wild-type (WT) and ABA-deficient (notabilis, not) tomatoes. Both genotypes had similar rhizosheath weight, root length, and root ABA concentration in well-watered soil. Drying stress treatment decreased root length similarly in both genotypes, but substantially increased root ABA concentration and rhizosheath weight of WT plants, indicating an important role for ABA in rhizosheath formation. Neither genotype nor drying stress treatment affected root hair length, but drying stress treatment decreased root hair density of not. Under drying stress conditions, root hair length was positively correlated with rhizosheath weight in both genotypes, while root hair density was positively correlated with rhizosheath weight in well-watered not plants. Root transcriptome analysis revealed that drought stress increased the expression of ABA-responsive transcription factors, such as AP2-like ER TF, alongside other drought-regulatory genes associated with ABA (ABA 8′-hydroxylase and protein phosphatase 2C). Thus, root ABA status modulated the expression of specific gene expression pathways. Taken together, drought-induced rhizosheath enhancement was ABA-dependent, but independent of root hair length.

Moderate water stress in rice induces rhizosheath formation associated with abscisic acid and auxin responses

The rhizosheath is known to be beneficial for drought resistance in many plants, but the regulation of rhizosheath formation in rice plants is unclear. Here, we investigate rhizosheath formation in different rice varieties and root hair mutants. Our results showed that moderate water stress in rice induced rhizosheath formation. The soil porosity and water content were higher in the rice rhizosheath than in the rice bulk soil under moderate water stress. Additionally, rhizosheath formation in short root hair mutants was lower than in wild-type rice under moderate water stress. Moreover, transcriptomic results indicated that abscisic acid (ABA) and auxin were involved in root and root hair responses in rhizosheath formation. Further, blocking ABA and auxin pathways in wild type and in rhl1-1, the shortest root hair mutant, rhizosheath formation and root hair length were significantly decreased under moderate water stress. However, wild type plants maintained a higher root ABA content, root basipetal auxin transport, root hair length, and amount of rhizosheath than did rhl1-1. Our results suggest that moderate water stress in rice induces rhizosheath formation by modulating the ABA and auxin responses to regulate root and root hair growth, which may be used to breed rice varieties resistant to drought.

Variation in root morphology and P acquisition efficiency among Trifolium subterraneum genotypes

Trifolium subterraneum L. is widely grown in the phosphorus (P) deficient soils of southern Australia. However, this pasture legume has a high critical external P requirement and requires frequent applications of P fertiliser to achieve high productivity. Twenty-six genotypes of T. subterraneum were grown to determine: (i) differences in shoot growth and P acquisition under low-P supply; (ii) the root morphological traits important for P acquisition; and (iii) the feasibility of selection among genotypes for these root morphological traits. Micro-swards of each genotype were grown with a topsoil layer that was either moderately P-deficient or had P supplied in excess of the critical requirement for maximum yield; the subsoil layer was P-deficient. Yield and P content of shoots and roots were determined after 5 weeks’ growth, and root samples were assessed for diameter, length and root hair length. All genotypes were equally highly productive when excess P was supplied. However, relative shoot yield in the moderately P-deficient soil ranged from 38–71%. Total root length ranged from 63–129 m pot–1, and was correlated with total plant P uptake (R2 = 0.78, P < 0.001). Variation was also observed in average root diameter (0.29–0.36 mm) and root hair length (0.19–0.33 mm). These traits were combined with root length to calculate the total surface area of the root hair cylinder, which was also correlated with total plant P uptake (R2 = 0.69, P < 0.001). The results demonstrated that there was significant variation in P acquisition efficiency and shoot yield among genotypes of T. subterraneum when grown in P-deficient soil, and that root length was important for improved P uptake. The results indicate potential to identify superior genotypes that achieve improved P acquisition and higher shoot yields in low-P soil.