Experimental Evidence for Manure-Borne Bacteria Invasion in Soil During a Coalescent Event: Influence of the Antibiotic Sulfamethazine

The fertilization of agricultural soil by organic amendment that may contain antibiotics, like manure, can transfer bacterial pathogens and antibiotic-resistant bacteria to soil communities. However, the invasion by manure-borne bacteria in amended soil remains poorly understood, being hardly observed. Here, we assessed the invasions of manure-borne bacteria during a coalescence event between manure and soil, in different soils and in the presence or absence of antibiotics. To this end, microcosms of four different soils were amended or not with manure at an agronomical dose and/or exposed or not to the antibiotic sulfamethazine (SMZ). After one month of incubation, the diversity, structure and composition of bacterial communities of the soils were assessed by 16S rDNA sequencing. The invasion of manure-borne bacteria was still perceptible one month after the soil amendment. The results obtained with the soil already amended in situ with manure six months prior to the experiment suggest that some of the bacterial invaders were established in the community over the long term. Even if differences were observed between soils, the invasion was mainly attributable to some of the most abundant OTUs of manure (mainly Firmicutes). SMZ exposure had a limited influence on soil microorganisms. It was significant in only one soil, where it enhanced the invasion potential of some manure-borne invaders.

Soil and Plant Responses to Phosphorus Inputs from Different Phytase-Associated Animal Diets

The over-supplementation of animal feeds with phosphorus (P) within livestock-production systems leads to high rates of P excretion and thus to high P loads and losses, which negatively impact the natural environment. The addition of phytase to pig and poultry diets can contribute to reducing P excretion; however, cascading effects of phytase on plant–soil systems remain poorly understood. Here, we addressed how three different diets containing various levels of exogenous phytase, i.e., (1) no-phytase, (2) phytase (250 FTU), and (3) superdose phytase (500 FTU) for pigs (Sus scrofa domesticus) and broilers (Gallus gallus domesticus) might affect P dynamics in two different plant–soil systems including comfrey (Symphytum ×uplandicum) and ryegrass (Lolium perenne). We found that differences in phytase supplementation significantly influenced total P content (%) of broiler litter and also pig slurry (although not significantly) as a result of dietary P content. P Use Efficiency (PUE) of comfrey and ryegrass plants was significantly higher under the intermediate ‘phytase’ dose (i.e., commercial dose of 250 FTU) when compared to ‘no-phytase’ and ‘superdose phytase’ associated with pig slurry additions. Soil P availability (i.e., water soluble P, WSP) in both comfrey and ryegrass mesocosms significantly decreased under the intermediate ‘phytase’ treatment following pig slurry additions. Dietary P content effects on P losses from soils (i.e., P leaching) were variable and driven by the type of organic amendment. Our study shows how commercial phytase levels together with higher dietary P contents in pig diets contributed to increase PUE and decrease WSP thus making the plant–soil system more P conservative (i.e., lower risks of P losses). Our evidence is that dietary effects on plant–soil P dynamics are driven by the availability of P forms (for plant uptake) in animal excretes and the type of organic amendment (pig vs. broiler) rather than plant species identity (comfrey vs. ryegrass).

Subsurface organic amendment with plastic film mulching reinforced soil organic carbon through altering saline soil aggregate structure and regulating fungal community

The combination of plastic film mulching and subsurface organic amendment is a novel strategy for saline soil amelioration and utilization in China. However, how the strategy affect soil organic carbon (SOC) contents directly and indirectly (physical protection and microbiological regulation) were still not-documented. Therefore, four treatments, i.e., no amendment with and without plastic film mulching, subsurface (10-30 cm soil depth) organic amendment with and without plastic film mulching, were arranged and sampled after three-year filed experiment. Compared with no amendment with and without plastic film mulching, subsurface organic amendment increased the SOC content in the 0-40 cm soil depth by 70% and 90%, respectively. Plastic film mulching decreased SOC by 16% without organic amendment. Subsurface organic amendment transformed the dominant aggregation particles from <0.053 mm to 0.25-2 mm, indicating that both direct carbon input and indirect physical protection contributed to SOC increment. Conversely, SOC decreased with plastic film mulching due to the 14% lower fungal diversity compared with soil without plastic film mulching, was supported by the positive path coefficient from fungal diversity to SOC. Therefore, the combination of plastic film mulching and subsurface organic amendment increased SOC by 61% by direct carbon input and indirect physical protection and microbial regulation. In conclusion, subsurface organic amendment with plastic film mulching reinforced soil organic carbon increment through altering saline soil aggregate structure and regulating fungal community, and confirmed it is a feasible way to increase SOC for saline soil amelioration.

Rubber bark dust-zeolite composite improved mechanic strength of soft paddy soil through improved microstructure

<p>Soft paddy soils are not a stable soil structure that leads to the decline of rice production in Kedah, Malaysia. The soil had high compressibility and water content, and low soil strength thus the agricultural machines could not be operated above this soil. Therefore, this study was conducted to improve the mechanical strength of soft soils in paddy fields using an organic amendment. The organic amendment used in this study was made from amended materials comprising clinoptilolite, kieserite, humic acid, and rubber bark dust. The study was carried out in the paddy field area of Alor Pudak district, Kedah, Malaysia, and it was divided into five treatments of amendment dose, i.e: 0 kg (control or P0), 125 kg (P1), 250 kg (P2), 375 kg (P3) and 500 kg (P4) with each plot size about 0.20 ha. The soil samples were then analyzed using X-ray diffraction (XRD), scanning electron microscope (SEM), and the unconsolidated undrained triaxial compression test (UU-test) to characterize their amended properties. The XRD results clearly exhibited changes in the mineralogical composition of all treated plots with an increasing smectite content (1200 to 1300 intensity). Furthermore, the SEM results showed that clay particles in the treated plots have been flocculated to form close-knit, more stable soil structures. After the organic amendment application, the mechanical strength of the treated plots increased to an optimum level (50 kPa in P2) for resisting mechanical pressure from agricultural machinery. Overall, this study of the efficacy of organic amendment offers new insight into a soft paddy soil remediation method that is more effective and economical than the conventional method.</p>

Use of Digestate as Organic Amendment and Source of Nitrogen to Vegetable Crops

Anaerobic digestion is a valuable process to use livestock effluents to produce green energy and a by-product called digestate with fertilising value. This work aimed at evaluating the fertilising value of the solid fraction (SF) of a digestate as an organic amendment and as a source of nitrogen to crops replacing mineral N. A field experiment was done with two consecutive vegetable crops. The treatments were: a control without fertilisation; Ni85 mineral fertilisation with 85 kg ha−1 of mineral N; fertiliser with digestate at an increasing nitrogen application rate (kg N ha−1): DG-N85 DG-N170, DG-N170+85, DG-N170+170; fertilisation with digestate together with Ni: DG-N85+Ni60, DG-N170+Ni60, DG-N170+Ni25. The results showed a soil organic amendment effect of the SF with a beneficial effect on SOM, soil pH and exchangeable bases. The SF was able to replace part of the mineral N fertilisation. The low mineralisation of the stable organic matter together with some immobilisation of mineral N from SF caused low N availability. The fertilisation planning should consider the SF ratio between the organic N (NO) and total N (TKN). Low NO:TKN ratios (≈0.65) needed lower Ni addition to maintaining the biomass production similar to the mineral fertilisation.

Impact of Organic Matter, Inorganic, and Biofertilizer Combination on Soybean Yield in Entisol Soil of Indonesia

The study aimed to investigate an effect of organic fertilizer applied to rice in the first planting season for unfertilized soybean as second crop followed by inorganic and biofertilizer applied in the third season on soybean growth and yield under the rice-soybean-soybean cropping pattern in 2016/2017. The main plot was organic: (1) without organic amendment, (2) 10 t·ha−1 of chicken manure, and (3) 10 t·ha−1 precomposted rice straw. The subplot was inorganic N and P fertilizers and commercial biofertilizer (consisting of Rhizobium, nitrogen-fixing bacteria, and P-solubilizing bacteria) applied at planting of soybeans in the second dry season: (1) control (no inorganic and biofertilizer), (2) 50 kg urea ha−1, (3) 100 kg SP36·ha−1, (4) 50 kg urea + 100 kg SP36 ha−1, (5) biofertilizer, (6) biofertilizer + 25 kg urea ha−1, (7) biofertilizer + 75 kg SP36 ha 1, and (8) biofertilizer + 25 kg urea + 75 kg SP36 ha−1. Soybean planted on the first dry season after rice harvested was not fertilized (untreated). The results showed that the chicken manure amendment increased grain yield of soybean in the second season, i.e., from 1.03 t·ha−1 (without organic amendment) to 1.27 t·ha−1, an increase of 23%. There was no effect of rice straw on soybean grain yield. In the third season, however, the residual effect of straw compost or chicken manure increased soybean grain yield by 8% and 20%, respectively. Both straw compost and chicken manure also showed a positive effect on the use of inorganic and biofertilizers in increasing soybean productivity.

Dynamics of carbon loss from an arenosol by a forest/vineyard land use change on a centennial scale

Few studies have focused on arenosols with regard to soil carbon dynamics despite the fact that they represent 8 % of the world's soils and are present in key areas where food security is a major issue (e.g. in Sahelian regions). As for other soil types, land use changes (from forest or grassland to cropland) lead to a loss of substantial soil organic carbon (SOC) stocks and have a lasting impact on the SOC turnover. Here we quantified long-term variations in carbon stocks and their dynamics in a 80 cm deep Mediterranean Arenosol that had undergone a land use change from forest to vineyard over more than 100 years ago. Paired-sites of adjacent plots combined with carbon and nitrogen quantification and natural radiocarbon (14C) abundance analyses revealed a stock of 50 GtC ha−1 in the 0–30 cm forest soil horizon, which was reduced to 3 GtC ha−1 after long-term grape cultivation. TOC in vineyard was dramatically low, with around 1 gC kg−1 and no vertical gradient as a function of depth. 14C showed that deep ploughing (50 cm) in vineyard plot redistributed the remaining carbon both vertically and horizontally. This remaining carbon was old carbon (compared to that of the forest), which had a C : N ratio characteristic of microbial OM and was probably stabilized within organomineral associations. Despite the drastic degradation of the OM pool in this Arenosol, this soil would have a high carbon storage potential if agricultural practices, such as grassing or organic amendment applications, were to be implemented within the framework of the 4 per 1000 Initiative.