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2022 ◽  
Vol 23 (2) ◽  
pp. 869
Author(s):  
Negin Gooran ◽  
Bo Kyeong Yoon ◽  
Joshua A. Jackman

Triton X-100 (TX-100) is a widely used detergent to prevent viral contamination of manufactured biologicals and biopharmaceuticals, and acts by disrupting membrane-enveloped virus particles. However, environmental concerns about ecotoxic byproducts are leading to TX-100 phase out and there is an outstanding need to identify functionally equivalent detergents that can potentially replace TX-100. To date, a few detergent candidates have been identified based on viral inactivation studies, while direct mechanistic comparison of TX-100 and potential replacements from a biophysical interaction perspective is warranted. Herein, we employed a supported lipid bilayer (SLB) platform to comparatively evaluate the membrane-disruptive properties of TX-100 and a potential replacement, Simulsol SL 11W (SL-11W), and identified key mechanistic differences in terms of how the two detergents interact with phospholipid membranes. Quartz crystal microbalance-dissipation (QCM-D) measurements revealed that TX-100 was more potent and induced rapid, irreversible, and complete membrane solubilization, whereas SL-11W caused more gradual, reversible membrane budding and did not induce extensive membrane solubilization. The results further demonstrated that TX-100 and SL-11W both exhibit concentration-dependent interaction behaviors and were only active at or above their respective critical micelle concentration (CMC) values. Collectively, our findings demonstrate that TX-100 and SL-11W have distinct membrane-disruptive effects in terms of potency, mechanism of action, and interaction kinetics, and the SLB platform approach can support the development of biophysical assays to efficiently test potential TX-100 replacements.


2022 ◽  
Author(s):  
Pranav Vashisht ◽  
Brahmaiah Pendyala ◽  
Ankit Patras ◽  
Vybhav Vipul Sudhir Gopisetty ◽  
Ramasamy Ravi

UV-C processing of whole milk (WM) using a designed pilot scale Dean flow system was conducted at flow rates (11.88, 23.77, and 47.55 gph), Reynolds number ranges from 2890-11562 and the Dean number (at curved region) calculated as (648-2595) to inactivate bacterial endospores and virus particles. Biodosimetry studies were conducted to quantify the reduction equivalent fluence at selected experimental conditions. Results revealed that the dose distribution improved as flow rate increases, attributed to increase in Dean effects and turbulence intensity. Microbial inactivation studies conducted at 47.55 gph showed 0.91 (stdev:0.15) and 2.14 (stdev:0.19) log reduction/ pass for B. cereus endospores and T1UV phage. Linear inactivation trend was observed against number of passes which clearly demonstrates equivalent dose delivery during each pass. Lipid peroxidation value and volatile profile did not change significantly at UV dose of 60 mJ/cm 2. Lower E EO value signifies the higher electrical efficiency of the system.


2022 ◽  
Vol 5 (1) ◽  
pp. 5
Author(s):  
Tautvydas Shuipys ◽  
Naim Montazeri

Murine hepatitis virus (MHV) is a non-human pathogen betacoronavirus that is evolutionarily and structurally related to the human pathogenic viruses SARS-CoV, MERS-CoV, and SARS-CoV-2. However, unlike the human SARS and MERS viruses, MHV requires a biosafety level 2 laboratory for propagating and safe handling, making it a potentially suitable surrogate virus. Despite this utility, few papers discussed the propagation and quantification of MHV using cell lines readily available in biorepositories making their implementations not easily reproducible. This article provides protocols for propagating and quantifying MHV-A59 using the recommended NCTC clone 1469 and clone 929 cell lines from American Type Culture Collection (ATCC). More specifically, the methods detail reviving cells, routine cell passaging, preparing freeze stocks, infection of NCTC clone 1469 with MHV and subsequent harvesting, and plaque assay quantification of MHV using NCTC clone 929 cells. Using these protocols, a BSL-2 laboratory equipped for cell culture work would generate at least 6.0 log plaque-forming units (PFU) per mL of MHV lysate and provide an optimized overlay assay using either methylcellulose or agarose as overlays for the titration of infectious virus particles. The protocols described here are intended to be utilized for persistence and inactivation studies of coronaviruses.


Viruses ◽  
2021 ◽  
Vol 14 (1) ◽  
pp. 60
Author(s):  
Subha Dahal ◽  
Ran Cheng ◽  
Peter K. Cheung ◽  
Terek Been ◽  
Ramy Malty ◽  
...  

Medicinal chemistry optimization of a previously described stilbene inhibitor of HIV-1, 5350150 (2-(2-(5-nitro-2-thienyl)vinyl)quinoline), led to the identification of the thiazole-5-carboxamide derivative (GPS491), which retained potent anti-HIV-1 activity with reduced toxicity. In this report, we demonstrate that the block of HIV-1 replication by GPS491 is accompanied by a drastic inhibition of viral gene expression (IC50 ~ 0.25 µM), and alterations in the production of unspliced, singly spliced, and multiply spliced HIV-1 RNAs. GPS491 also inhibited the replication of adenovirus and multiple coronaviruses. Low µM doses of GPS491 reduced adenovirus infectious yield ~1000 fold, altered virus early gene expression/viral E1A RNA processing, blocked viral DNA amplification, and inhibited late (hexon) gene expression. Loss of replication of multiple coronaviruses (229E, OC43, SARS-CoV2) upon GPS491 addition was associated with the inhibition of viral structural protein expression and the formation of virus particles. Consistent with the observed changes in viral RNA processing, GPS491 treatment induced selective alterations in the accumulation/phosphorylation/function of splicing regulatory SR proteins. Our study establishes that a compound that impacts the activity of cellular factors involved in RNA processing can prevent the replication of several viruses with minimal effect on cell viability.


2021 ◽  
Author(s):  
Qian Wang ◽  
Saumya Anang ◽  
Sho Iketani ◽  
Yicheng Guo ◽  
Lihong Liu ◽  
...  

The recently emerged B.1.1.529 (Omicron) SARS-CoV-2 variant has a highly divergent spike (S) glycoprotein. We compared the functional properties of B.1.1.529 S with those of previous globally prevalent SARS-CoV-2 variants, D614G and B.1.617.2. Relative to these variants, B.1.1.529 S exhibits decreased processing, resulting in less efficient syncytium formation and lower S incorporation into virus particles. Nonetheless, B.1.1.529 S supports virus infection equivalently. B.1.1.529 and B.1.617.2 S glycoproteins bind ACE2 with higher affinity than D614G S. The unliganded B.1.1.529 S trimer is less stable at low temperatures than the other SARS-CoV-2 spikes, a property related to spike conformation. Upon ACE2 binding, the B.1.1.529 S trimer sheds S1 at 37 degrees but not at 0 degrees C. B.1.1.529 pseudoviruses are relatively resistant to neutralization by sera from convalescent COVID-19 patients and vaccinees. These properties of the B.1.1.529 spike glycoprotein likely influence the transmission, cytopathic effects and immune evasion of this emerging variant.


Author(s):  
Noemi Belišová ◽  
Barbora Konečná ◽  
Nikoleta Bachratá ◽  
Jozef Ryba ◽  
Alena Potočárová ◽  
...  

The research aims at washing processes as possible sources of microplastics, specifical microfibers in wastewater, and the behavior of the virus particles SARS-CoV-2 in wastewater after the washing process as well as their ability to sorb to the surface of microfibers, released from washing processes. The conclusions of the research point to the ability of the virus to attach to possible solid impurities such as textile fibers (microfibers) occurring in the sewer and to the ability of wash water to influence their possible occurrence in the sewer. The highest efficiency (more than 99%) of removal virus particles was after washing process, using liquid washing powder, and washing soda. These findings may gradually contribute to a better understanding of the behavior of the virus particles in the sewer.


2021 ◽  
Vol 10 (36) ◽  
pp. 170-171
Author(s):  
Camila Siqueira ◽  
Rafaela Mendonça ◽  
Venicio Veiga ◽  
Mariah Marcondes ◽  
Jose Nelson Couceiro ◽  
...  

Biotherapics are homeopathic remedies prepared from organic products that are chemically undefined and can be used for treatment of diseases like influenza. There are several classes of biotherapics and, among these, there are some called "living biotherapics" or "Roberto Costa’s Biotherapics". This study aimed to compare the cellular and biochemical effects of biotherapics prepared from intact influenza virus diluted in water and the one obtained from the same viral sample inactivated by ethanol 70% (v / v), both in the potencies of 12x and 30x. Transmission electron microscopy (TEM) analyses were performed on both preparations to assess the integrity of viral particles, which showed that ethanol 70% (v/v) induced a complete denaturation of viral particles. In contrast, the integrity of virus particles was preserved when water was used as the biotherapic solvent. Cellular and biochemical alterations induced by the preparations on MDCK cells were analyzed and compared with those induced by respective controls (water 30x-treated and untreated cells). Cellular viability analyzed by MTT method showed statistically significant differences (p


2021 ◽  
Author(s):  
Yakup Yıldırım ◽  
Mehmet Kale ◽  
Özlem Özmen ◽  
Abdurrahman Anıl Çağırgan ◽  
Sibel Hasırcıoğlu ◽  
...  

Abstract Papillomaviruses are epitheliotropic viruses causing proliferations in skin, mucosa and various internal organs in different animal species. Especially due to lesions it causes in teats of cattle, it leads to important economical losses in milk sector. In this study, the aim was to diagnose bovine papillomaviruses (BPVs) causing teat papillomas in cattle by immunohistochemical, transmission electron microscopy (TEM) and molecular methods and to detect the defect on tissues by the virus using histopathological method. In addition to this, sequence analysis of the isolated field strains were to be carried out and their genetic and phylogenetic closeness with the strains within the literature were to be detected. After confirming teat papillomatosis in the collected samples using histopathological and immunohistochemical methods, other diagnosis methods were then used. During the TEM examination of teat lesions, intranuclear virus particles were seen in epithelium cells. After carrying out PCR using degenerate primers and type specific primers, 7 samples were detected as positive for BPV and these samples were used for typing using sequence analysis/PCR with type-specific primers. Within these analysis, three out of seven BPV isolates we collected from infected teat tissues of different cattle were detected as BPV-6, two as BPV-10, one as BPV-2 and one as BPV-8. Five isolates we isolated during sequence analysis of positive samples were found in Xipapillomavirus 1 genus, one in Epsilonpapillomavirus 1 genus and another in Deltapapillomavirus genus. As a result, in molecular diagnosis of BPV that takes place in etiology of teat papillomas, using type specific primers proved to be useful following the usage of genotyping in molecular diagnosis of BPV and generate primers in characterization. Detecting BPV types and their prevalence, taking biosafety measures in animal breeding and giving importance to vaccine studies was considered essential.


Archaea ◽  
2021 ◽  
Vol 2021 ◽  
pp. 1-11
Author(s):  
Shaoxing Chen ◽  
Yongpei Dai ◽  
Jingwen Liu ◽  
Shimin Zhang ◽  
Feilong Chen ◽  
...  

A novel halovirus, VOLN27B, was isolated from a drill core sample taken at a depth of approximately 430 m, from a layer formed during the Cretaceous period (Anhui, China). VOLN27B infects the halophilic archaeon Halorubrum sp. LN27 and has a head-tailed morphotype with a contractile tail, typical of myoviruses. The average head diameter is 64 ± 2.0  nm, and uncontracted tails are 15 ± 1.0 × 65 ± 2.0  nm. The latent period is about 10 h. The maturing time of VOLN27B in cells of Halorubrum sp. LN27 was nearly 8 h. The adsorption time of VOLN27B on cells of Halorubrum sp. LN27 was less than 1 min. Virus particles are unstable at pH values less than 5 or when the NaCl concentration is below 12% ( w / v ). VOLN27B and Halorubrum sp. LN27 were recovered from the same hypersaline environment and provide a new virus-host system in haloarchaea.


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