Implications of salinity normalization of seawater total alkalinity in coral reef metabolism studies

Salinity normalization of total alkalinity (TA) and dissolved inorganic carbon (DIC) data is commonly used to account for conservative mixing processes when inferring net metabolic modification of seawater by coral reefs. Salinity (S), TA, and DIC can be accurately and precisely measured, but salinity normalization of TA (nTA) and DIC (nDIC) can generate considerable and unrecognized uncertainties in coral reef metabolic rate estimates. While salinity normalization errors apply to nTA, nDIC, and other ions of interest in coral reefs, here, we focus on nTA due to its application as a proxy for net coral reef calcification and the importance for reefs to maintain calcium carbonate production under environmental change. We used global datasets of coral reef TA, S, and modeled groundwater discharge to assess the effect of different volumetric ratios of multiple freshwater TA inputs (i.e., groundwater, river, surface runoff, and precipitation) on nTA. Coral reef freshwater endmember TA ranged from -2 up to 3032 μmol/kg in hypothetical reef locations with freshwater inputs dominated by riverine, surface runoff, or precipitation mixing with groundwater. The upper bound of freshwater TA in these scenarios can result in an uncertainty in reef TA of up to 90 μmol/kg per unit S normalization if the freshwater endmember is erroneously assumed to have 0 μmol/kg alkalinity. The uncertainty associated with S normalization can, under some circumstances, even shift the interpretation of whether reefs are net calcifying to net dissolving, or vice versa. Moreover, the choice of reference salinity for normalization implicitly makes assumptions about whether biogeochemical processes occur before or after mixing between different water masses, which can add uncertainties of ±1.4% nTA per unit S normalization. Additional considerations in identifying potential freshwater sources of TA and their relative volumetric impact on seawater are required to reduce uncertainties associated with S normalization of coral reef carbonate chemistry data in some environments. However, at a minimum, researchers should minimize the range of salinities over which the normalization is applied, precisely measure salinity, and normalize TA values to a carefully selected reference salinity that takes local factors into account.

Simulation of Density and Flow Dynamics in a Lagoon Aquifer Environment and Implications for Nutrient Delivery From Land to Sea

The near coastal zone, hosting the saltwater-freshwater interface, is an important zone that nutrients from terrestrial freshwaters have to pass to reach marine environments. This zone functions as a highly reactive biogeochemical reactor, for which nutrient cycling and budget is controlled by the water circulation within and across that interface. This study addresses the seasonal variation in water circulation, salinity pattern and the temporal seawater-freshwater exchange dynamics at the saltwater-wedge. This is achieved by linking geophysical exploration and numerical modeling to hydrochemical and hydraulic head observations from a lagoon site at the west coast of Denmark. The hydrochemical data from earlier studies suggests that increased inland recharge during winter drives a saltwater-wedge regression (seaward movement) whereas low recharge during summer causes a wedge transgression. Transient variable density model simulations reproduce only the hydraulic head dynamics in response to recharge dynamics, while the salinity distribution across the saltwater wedge cannot be reproduced with accuracy. A dynamic wedge is only simulated in the shallow part of the aquifer (<5 m), while the deeper parts are rather unaffected by fluctuations in freshwater inputs. Fluctuating salinity concentrations in the lagoon cause the development of a temporary intertidal salinity cell. This leads to a reversed density pattern in the underlying aquifer and the development of a freshwater containing discharge tube, which is confined by an overlying and underlying zone of saltwater. This process can explain observed trends in the in-situ data, despite an offset in absolute concentrations. Geophysical data indicates the presence of a deeper low hydraulic conductive unit, which coincides with the stagnant parts of the simulated saltwater-wedge. Thus, exchange fluxes refreshing the deeper low permeable areas are reduced. Consequently, this study suggests a very significant seasonal water circulation within the coastal aquifer near the seawater-freshwater interface, which is governed by the hydrogeological setting and the incoming freshwater fluxes, where nutrient delivery is limited to a small corridor of the shallow part of the aquifer.

Abundances and morphotypes of the coccolithophore <i>Emiliania huxleyi</i> in southern Patagonia compared to neighbouring oceans and Northern Hemisphere fjords

Coccolithophores are potentially affected by ongoing ocean acidification, where rising CO2 lowers seawater pH and calcite saturation state (Ωcal). Southern Patagonian fjords and channels provide natural laboratories for studying these issues due to high variability in physical and chemical conditions. We surveyed coccolithophore assemblages in Patagonian fjords during late spring 2015 and early spring 2017. Surface Ωcal exhibited large variations driven mostly by freshwater inputs. High-Ωcal conditions (max. 3.6) occurred in the Archipelago Madre de Dios. Ωcal ranged from 2.0–2.6 in the western Strait of Magellan and 1.5–2.2 in the inner channel and was subsaturating (0.5) in Skyring Sound. Emiliania huxleyi was the only coccolithophore widely distributed in Patagonian fjords (> 96 % of total coccolithophores), only disappearing in the Skyring Sound, a semi-closed mesohaline system. Correspondence analysis associated higher E. huxleyi biomasses with lower diatom biomasses. The highest E. huxleyi abundances in Patagonia were in the lower range of those reported in Norwegian fjords. Predominant morphotypes were distinct from those previously documented in nearby oceans but similar to those of Norwegian fjords. Moderately calcified forms of E. huxleyi A morphotype were uniformly distributed throughout Patagonia fjords. The exceptional R/hyper-calcified coccoliths, associated with low Ωcal values in Chilean and Peruvian coastal upwellings, were a minor component associated with high Ωcal levels in Patagonia. Outlying mean index (OMI) niche analysis suggested that pH and Ωcal conditions explained most variation in the realized niches of E. huxleyi morphotypes. The moderately calcified A morphotype exhibited the widest niche breadth (generalist), while the R/hyper-calcified morphotype exhibited a more restricted realized niche (specialist). Nevertheless, when considering an expanded sampling domain, including nearby southeast Pacific coastal and offshore waters, even the R/hyper-calcified morphotype exhibited a higher niche breadth than other closely phylogenetically related coccolithophore species. The occurrence of E. huxleyi in naturally low pH–Ωcal environments indicates that its ecological response is plastic and capable of adaptation.

General Hydrography of the Beagle Channel, a Subantarctic Interoceanic Passage at the Southern Tip of South America

The Beagle Channel (BC) is a long and narrow interoceanic passage (∼270 km long and 1–12 km wide) with west-east orientation and complex bathymetry connecting the Pacific and Atlantic oceans at latitude 55°S. This study is the first integrated assessment of the main oceanographic features of the BC, using recent oceanographic observations from cruises, moored instruments and historical observations. The waters transported into the BC are supplied mainly by the Cape Horn Current, which carries Subantarctic Water (SAAW) at depth (100 m below surface) along the Pacific Patagonian continental shelf break. SAAW enters the continental shelf via a submarine canyon at the western entrance of the BC. The SAAW is diluted by fresh, nutrient depleted (nitrate, phosphate and silicic acid) Estuarine Water (EW) from Cordillera Darwin Ice Field (CDIF) forming modified SAAW (mSAAW). Freshwater inputs from the CDIF generate a two-layer system with a sharp pycnocline which delimits the vertical distribution of phytoplankton fluorescence (PF). Two shallow sills (&lt;70 m) along the BC contribute to EW and mSAAW mixing and the homogenization of the entire water column east of the sills, coherent with Bernoulli aspiration. The central section of the BC, extending ∼100 km toward the east, is filled by a salty (31–32) variety of EW. In winter, this central section is nearly vertically homogeneous with low nutrient concentrations (0.9–1.1 μM PO4 and 7.5–10 μM NO3) and PF. The temporal variability of seawater temperature from 50 to 195 m in the central section of the BC was found to be mostly dominated by the annual and semiannual cycles and influenced by tidal forcing. The middle section of the BC was less influenced by oceanic inputs and its basin-like structure most likely favors retention, which was observed from the weakly stratified water column at the mooring site. Toward the east, the central section bathymetry is disrupted at Mackinlay Strait where another shallow sill separates the middle channel from the shallow eastern entrance that connects to the Atlantic Ocean. In this section, a weakly stratified two-layer system is formed when the eastward surface outflow (salty-EW) flows over a deeper, denser tongue of oceanic mSAAW.

The Legacy of the Idrija Mine Twenty-Five Years after Closing: Is Mercury in the Water Column of the Gulf of Trieste Still an Environmental Issue?

Mercury (Hg) contamination in the Gulf of Trieste (northern Adriatic Sea) due to mining activity in Idrija (Slovenia) still represents an issue of environmental concern. The Isonzo/Soča River’s freshwater inputs have been identified as the main source of Hg into the Gulf, especially following periods of medium-high discharge. This research aims to evaluate the occurrence and distribution of dissolved (DHg) and particulate (PHg) Hg along the water column in the northernmost sector of the Gulf, a shallow and sheltered embayment suitable for the accumulation of fine sediments. Sediment and water samples were collected under unperturbed and perturbed environmental conditions induced by natural and anthropogenic factors. Mercury in the sediments (0.77–6.39 µg g−1) and its relationship to grain size were found to be consistent with previous research focused on the entire Gulf, testifying to the common origin of the sediment. Results showed a notable variability of DHg (<LOD–149 ng L−1) and PHg (0.39–12.5 ng L−1) depending on the interaction between riverine and marine hydrological conditions. Mercury was found to be mainly partitioned in the suspended particles, especially following periods of high discharge, thus confirming the crucial role of the river inputs in regulating PHg distribution in the Gulf.

Coupling Rivers and Estuaries with an Ocean Model: An Improved Methodology

Freshwater sources are essential inputs for regional ocean models covering coastal areas such as the western Iberian Peninsula. The problem is how to include the mixture between fresh and salt water, typically performed by estuaries and in the adjacent areas of river mouths, without unsustainable increases of computational time and human setup errors. This work provides a proof-of-concept solution to both these problems through the use of an offline two-way methodology, where local schematic rivers and estuaries are responsible for mixing river freshwater with salt water of a regional model application. Two different offline upscaling methodologies—which focus on the implementation of tidal fluxes from local domains to regional domains in the context of operational modelling—are implemented in the Portuguese Coast Operational Modelling System (PCOMS) regional model application as well as in a version without rivers. A comparison between results produced by these methodologies, field data, and satellite imagery was performed, which confirmed that the proposed methodology of using schematic rivers and estuaries, combined with the new offline upscaling methodology proposed herein, represents a good solution for operational modelling of coastal areas subject to a high dominance of freshwater inputs.

Climate and Land Cover Trends Affecting Freshwater Inputs to a Fjord in Northwestern Patagonia

Freshwater inputs strongly influence oceanographic conditions in coastal systems of northwestern Patagonia (41–45°S). Nevertheless, the influence of freshwater on these systems has weakened in recent decades due to a marked decrease in precipitation. Here we evaluate potential influences of climate and land cover trends on the Puelo River (640 m3s–1), the main source of freshwater input of the Reloncaví Fjord (41.5°S). Water quality was analyzed along the Puelo River basin (six sampling points) and at the discharge site in the Reloncaví Fjord (1, 8, and 25 m depth), through six field campaigns carried out under contrasting streamflow scenarios. We also used several indicators of hydrological alteration, and cross-wavelet transform and coherence analyses to evaluate the association between the Puelo River streamflow and precipitation (1950–2019). Lastly, using the WEAP hydrological model, land cover maps (2001–2016) and burned area reconstructions (1985–2019), we simulated future land cover impacts (2030) on the hydrological processes of the Puelo River. Total Nitrogen and total phosphorus, dissolved carbon, and dissolved iron concentrations measured in the river were 3–15 times lower than those in the fjord. Multivariate analyses showed that streamflow drives the carbon composition in the river. High streamflow conditions contribute with humic and colored materials, while low streamflow conditions corresponded to higher arrival of protein-like materials from the basin. The Puelo River streamflow showed significant trends in magnitude (lower streamflow in summer and autumn), duration (minimum annual streamflow), timing (more floods in spring), and frequency (fewer prolonged floods). The land cover change (LCC) analysis indicated that more than 90% of the basin area maintained its land cover, and that the main changes were attributed to recent large wildfires. Considering these land cover trends, the hydrological simulations project a slight increase in the Puelo River streamflow mainly due to a decrease in evapotranspiration. According to previous simulations, these projections present a direction opposite to the trends forced by climate change. The combined effect of reduction in freshwater input to fiords and potential decline in water quality highlights the need for more robust data and robust analysis of the influence of climate and LCC on this river-fjord complex of northwestern Patagonia.

Exploring Impacts of River Discharge on Forage Fish and Predators Using Ecopath With Ecosim

The ecology of estuaries is shaped significantly by the extent of freshwater discharge which regulates abiotic processes and influences overall biological productivity. The Suwannee River Estuary of Florida’s Big Bend Coastline has historically been a productive and diverse estuarine ecosystem supported by significant freshwater inputs from the Suwannee River. In recent years, significant changes in land use and climatic conditions have resulted in lower discharges from the Suwannee. Our objectives were to explore the impact of freshwater inputs from the Suwannee River on the estuarine forage fish and sportfish communities downstream. We built a trophic-dynamic food web model in Ecopath with Ecosim to simulate different levels of discharge and evaluate how changes in discharge (drought and floods) would influence the trophic structure of the food web. Using the fitted model, we applied a series of different short-term and long-term flow projections under different climatic scenarios to evaluate impacts on fish functional groups and sportfish biomass. Simulations suggested that ecological production was more influenced by drought conditions than flood conditions. In our short-term scenarios, the drought simulations produced biomass changes that were approximately twice as substantial as the flood scenarios. When making comparisons to other published EwE models, we generally observed smaller changes in biomass production. Although this model focused on the influence of bottom-up effects, we observed strong top-down control of snook (Centropomus undecimalis) on the system. Several functional groups were particularly sensitive to changes in snook abundance which included spotted seatrout (Cynoscion nebulosus), sand seatrout (C. arenarius), and other members of the family Sciaenidae. Because snook have recently colonized the estuary, likely as a result of warmer winter temperatures, this finding has implications for climate change and natural resource management.

Paleoenvironmental Evolution and Sea Level Change in Saronikos Gulf (Aegean Sea, Greece): Evidence from the Piraeus Coastal Plain and Elefsis Bay Sedimentary Records

Thorough faunal (benthic foraminifera, ostracods, molluscs) and palynomorph analyses as well as magnetic susceptibility measurements performed on the Piraeus coastal plain sedimentary sequences have shed light on the paleoenvironmental evolution of the area since ca. 9000 cal BP. Benthic and palynomorph assemblages along with magnetic susceptibility suggest a typical lagoonal environment with significant freshwater inputs at the eastern part of the plain after 8700 cal BP. Between 7500 and 5400 cal BP, microfaunal assemblages, mollusc fauna and magnetic susceptibility suggest a shallow marine paleoenvironment, with Piraeus forming a tied island in the center of the bay. Since ca. 4800 cal BP a closed oligohaline lagoon is evidenced in the western part of the Piraeus plain further developed to a marsh after 2800 cal BP, while a coastal environment associated with the fluvio-deltaic system of Kifissos and Korydallos Rivers is continually developing to the west. Signs of cultivation and grazing activities in the area are evidenced since the Early Bronze Age, culminating during the Classical Period. A comparison with a well-dated marine record, recovered from the nearby shallow Elefsis Bay, provides a reasonable estimation of ~5 mm/yr for the absolute sea level rise rate in the inner Saronikos Gulf during the Mid-Holocene.