A follow-up study of exercise test results and severity of brachycephalic obstructive airway syndrome signs in brachycephalic dogs

To promote successful breeding against brachycephalic obstructive airway syndrome (BOAS), it is important to assess how BOAS signs progress during young adulthood and how evaluation age and ageing affect the results of chosen breeding selection tools. The aims of this study were to assess how veterinary-assessed and owner-reported BOAS signs and exercise test results change when dogs age. Eight English Bulldogs, 25 French Bulldogs, and 31 Pugs that had undergone previous evaluation were re-examined 2– 3 years later. An owner questionnaire regarding BOAS signs, a veterinary assessment of BOAS severity, and exercise, ie walk tests were re-performed. In Pugs, both 6-min walking distance and 1,000-m time worsened and the initial evaluation age had a significant effect on the 1,000-m time. No significant changes were seen in the results of the French Bulldogs but a negative effect on the 1,000-m time was seen with weight gain. Exercise test statistics were not performed with regard to English Bulldogs due to low sample size. The veterinary-assessed BOAS severity class remained the same in the majority of dogs and the BOAS grade worsened mostly in those dogs that were initially evaluated at less than two years of age. Most owners reported no major changes in BOAS severity. BOAS grading and walk tests were easy to repeat and results remained relatively constant in dogs initially evaluated at over two years of age, supporting the use of these breeding selection tools. However, further, large-scale offspring studies are still needed.

Applications of the indole-alkaloid gramine modulate the assembly of individual members of the barley rhizosphere microbiota

Microbial communities proliferating at the root-soil interface, collectively referred to as the rhizosphere microbiota, represent an untapped beneficial resource for plant growth, development and health. Integral to a rational manipulation of the microbiota for sustainable agriculture is the identification of the molecular determinants of these communities. In plants, biosynthesis of allelochemicals is centre stage in defining inter-organismal relationships in the environment. Intriguingly, this process has been moulded by domestication and breeding selection. The indole-alkaloid gramine, whose occurrence in barley (Hordeum vulgare L.) is widespread among wild genotypes but has been counter selected in several modern varieties, is a paradigmatic example of this phenomenon. This prompted us to investigate how exogenous applications of gramine impacted on the rhizosphere microbiota of two, gramine-free, elite barley varieties grown in a reference agricultural soil. High throughput 16S rRNA gene amplicon sequencing revealed that applications of gramine interfere with the proliferation of a subset of soil microbes with a relatively broad phylogenetic assignment. Strikingly, growth of these bacteria appeared to be rescued by barley plants in a genotype- and dosage-independent manner. In parallel, we discovered that host recruitment cues can interfere with the impact of gramine application in a host genotype-dependent manner. Interestingly, this latter effect displayed a bias for members of the phyla Proteobacteria. These initial observations indicate that gramine can act as a determinant of the prokaryotic communities inhabiting the root-soil interface.

Regulating Seeds—A Challenging Task

Seed is an essential start of any crop production. Seed, as both botanical seed and vegetive planting materials, is thus a very important component of agricultural livelihoods in food, ornamental, and industrial value chains, of local and global food security, and a determinant of sustainability. All farmers need good seed, irrespective of the farming system and markets that they supply. Seed qualities, in terms of germination/vigour, health, and genetic content, are a concern of all farmers. Farmers have various ways to access seeds. With time, the diversity of farmers’ and formal seed systems have become increasingly refined and complex. Given the importance of seed, not just for farmers but for society at large, seeds have become subject to an increasing number of regulations that pursue different policy objectives. Some have been intentionally developed to regulate seed systems themselves, while others impact them as a side effect. Various components of different policies, regulations and outcomes, their interactions and apparent dilemmas and inconsistencies are discussed to highlight the significance of seeds and to illustrate the importance for policymakers and regulators to carefully phrase rules and be sensitive toward the possible unintended effects of their actions. This particularly relates to seed marketing regulations, intellectual property and farmers’ rights, and biodiversity and biosafety rules. A general conclusion is that rules and regulations need to respond to evolving technical and socio-economic developments. Since seed systems differ widely and operate side by side, regulating a particular system may negatively impact others. The challenge for policymakers is to create policies and regulations that support both formal and farmers’ seed systems where they are most effective while minimalising negative consequences for breeding, selection, and seed production in either system. Several suggestions and recommendations for how to do so are provided in this special issue.

Expression analysis and single-nucleotide polymorphisms of MLPH and PMEL17 genes associated with melanin deposition in Xuefeng black-bone chickens

Melanin deposition related genes such as MLPH and PMEL17 play an important role in black-bone chicken. This study was aimed to identify and associate SNPs in the MLPH and PMEL17 genes with melanin content of pectoral muscle (MCPM) in Xuefeng black-bone chicken. A total of 120 Xuefeng black-bone chickens at 120-day-old were randomly selected to measure blackness of pectoral muscle (BPM), according to the degree of BPM selected 22 high blackness (HB) and 22 low blackness (LB) chickens to determine the MCPM, and extract DNA and mRNA. The results indicated that the MCPM in the HB group was higher than in the LB group (P < 0.01), and the L value in the HB group was lower than in the LB group (P < 0.01). And we measured the mRNA expression levels of MLPH and PMEL17 genes in pectoral muscle by quantitative real-time PCR. The results revealed that the mRNA expression levels of MLPH gene (P < 0.05) and PMEL17 gene (P < 0.01) in the HB group was higher than in the LB group, and the mRNA relative expression level of MLPH and PMEL17 genes with MCPM was positive correlation (P < 0.01). And the sequencing results found that a total of 17 SNPs were found in MLPH gene, the C-1411T was associated with MCPM (P< 0.05), there was no difference in MCPM among other locus (P> > 0.05). And there were 10 SNPs in PMEL17 gene, the G-1843C, C-2812T, and G-2794A were associated with MCPM (P < 0.05), there was no difference in the MCPM among other locus (P > 0.05). These SNPs could be molecular markers for breeding selection of blackness traits.

Dissection The Practical Soybean Breeding Pipeline By Developing High Throughput Functional Array ZDX1

Microarray technology facilitates rapid, accurate, and economical genotyping. Here, using resequencing data from 2,214 representative soybean accessions, we developed the ZDX1 high-throughput functional soybean array, containing 158,959 SNPs, covering 90.92% of soybean genes and sites related to agronomically important traits. We genotyped 817 soybean accessions using ZDX1, including parental lines, non-parental lines, and progeny from a practical breeding pipeline. It was clarified that non-parental lines had highest genetic diversity, and 235 SNPs were identified to be fixed in the progeny. The unknown soybean cyst nematode-resistant and early maturity accessions were identified by using allele combinations. Notably, we found that breeding index was a good indicator for progeny selection, in which the superior progeny were derived from the crossing more distantly related parents with at least one parent having a higher breeding index. Based on this rule, two varieties were directionally developed. Meanwhile, redundant parents were screened out and potential combinations were formulated. GBLUP analysis displayed that the markers in genic regions had priority to be higher accuracy on predicting four agronomic traits compared with either whole genome or intergenic markers. Then we used progeny to expand the training population to increase the prediction accuracy of breeding selection by 32.1%. Collectively, our work provided a versatile array for high accuracy selecting and predicting both parents and progeny that can greatly accelerate soybean breeding.

Potato Tuber Shape Phenotyping Using RGB Imaging

Potato tuber shape is an important quality trait for breeding and variety development. Length to width (L/W) ratio is a commonly used method to score potato tubers for suitability for different markets and is relatively easy to measure, though labor intensive when done manually. L/W also does not adequately capture secondary growth and other tuber malformations that contribute to tuber shape. Tuber shape has a genetic component and is a prime target for early breeding selection. In the current study we developed an image analysis pipeline to extract tuber shape statistics from images taken using inexpensive, commercially available cameras. The image processing pipeline was used to evaluate greenhouse grown tubers from 32 unique crosses. Tubers from greenhouse grown plants were then grown in a field located in Vauxhall, AB, Canada, and evaluated for tuber shape. Randomly selected tuber images were also shown to industry agronomists and potato growers located in Southern Alberta and their shape scored for suitability for processing (French fry and chipping) markets. Based on measurements taken from greenhouse grown tubers we were able to classify whether mean tuber shape from field grown plants were within ideal shape parameters for processing markets with ~76–86% accuracy. Based on performance of progeny we identified parents which show higher breeding value for tuber shape.

Neurohormonal Profiles of Assistance Dogs Compared to Pet Dogs: What Is the Impact of Different Lifestyles?

Assistance dogs must manage stress efficiently because they are involved in challenging tasks. Their welfare is currently a fundamental issue. This preliminary study aimed to compare assistance dogs (AD; n = 22) with pet dogs (PD; n = 24), using blood neuromodulator indicators to help find biomarkers that can improve the AD breeding, selection, training, and welfare monitoring. Both populations originated from different breeds, are of different ages, and had different lifestyles. Basal peripheral concentrations of prolactin (PRL), serotonin (5-HT), free (fOT) and total (tOT) oxytocin were measured by immunoassays. Multiple linear regressions were performed to assess the effect of activity, age, sex, and their interactions on these parameters. Correlations between neurohormonal levels were analyzed. No interactions were significant. fOT and tOT concentrations were significantly influenced by age (p < 0.0001 and p = 0.0002, respectively) and dogs’ activity (p = 0.0006 and p = 0.0277, respectively). A tendency was observed for age effect on PRL (p = 0.0625) and 5-HT (p = 0.0548), as well as for sex effect on tOT (p = 0.0588). PRL concentrations were heterogenous among AD. fOT and tOT were significantly but weakly correlated (Pearson’s r = 0.34; p = 0.04). Blood prolactin, serotonin, and oxytocin may represent biomarkers to assess workload and chronic stress-related responses in ADs and eventually improve their selection and training.

Quantification of dwarfing effect of different rootstocks in ‘Picual’ olive cultivar using UAV-photogrammetry

Hedgerow orchard is an olive growing system where trees are planted at a super high-density higher than 20-fold (i.e., 1200–2500 trees ha−1) compared to the traditional density of olive orchards (usually 50 to 160 trees ha−1). It is dominating a great proportion of new plantations because harvesting can be fully mechanized, it is early bearing and has a relatively constant high productivity. However, there are a limited number of cultivars with sufficiently low vigour to be suitable for such plantation densities. For that reason, a set of low vigour cultivars and breeding selections has been used in a field experiment as rootstocks for reducing the vigour of “Picual”, the most frequent cultivar planted in Spain. Tree vigour was characterized by measuring crown height, projected and side areas, and volume through the analysis of photogrammetric point clouds created from images acquired with an unmanned aerial vehicle. A significant reduction of the ‘Picual’ vigour was observed in most of the rootstocks tested, with canopy volume reduced up to one half. High variability on vigour, first harvesting and their relative relationship was observed between the different rootstocks used. This indicates there might be enough genetic variability to perform breeding selection for dwarfing rootstocks on ‘Picual’ olive cultivar.