Abstract. Dinitrogen fixation is now recognized as one of the major sources of bio-available nitrogen in the ocean. Thus, nitrogen fixation sustains a significant part of the global primary production by providing an input of the most common limiting nutrient for phytoplankton growth. Evidences of the Western Tropical South Pacific being a hotspot of nitrogen fixation, and a data coverage complemented by OUTPACE, lead us to develop an explicit nitrogen fixation compartment based on the Trichodesmium physiology (the most studied nitrogen fixer) within a 3D coupled dynamical-biogeochemical model (ROMS-PISCES). We performed a first 20-year tropical Pacific simulation that is able to reproduce the main physical (e.g. Sea Surface Temperature) and biogeochemical conditions (nutrients, and chlorophyll concentrations as well as dinitrogen fixation). This simulation showed a possible Trichodesmium regional distribution that extends from 150° E to 120° W in the south tropical Pacific, and from 120° E to 140° W in the north tropical Pacific. The local simulated maximums were around islands (Hawaii, Fiji, Samoa, New Caledonia, Vanuatu). We assessed that 15 % of the total primary production may be due to Trichodesmium in the Low Nutrient, Low Chlorophyll regions (LNLC). We also argue that implicit parameterization of N2 fixation (often used in biogeochemical models) leads to underestimate nitrogen fixation rates by about 25% in LNLC regions compared to our explicit formulation. Finally, we showed that iron fluxes from island sediments control the spatial distribution and the abundance of Trichodesmium in the western tropical south Pacific. Noteworthy, this last result does not take into account the iron supply from rivers and hydrothermal sources, which may well be of importance in a region known for its strong precipitation rates and volcanic activity.