scholarly journals Eradication of the mongoose is crucial for the conservation of three endemic bird species in Yambaru, Okinawa Island, Japan

2021 ◽  
Author(s):  
Tsutomu Yagihashi ◽  
Shin-Ichi Seki ◽  
Tomoki Nakaya ◽  
Katsushi Nakata ◽  
Nobuhiko Kotaka
Keyword(s):  
Endemic Species ◽  
Large Scale ◽  
Mixed Model ◽  
Negative Impact ◽  
Bird Species ◽  
Hardwood Forests ◽  
Okinawa Island ◽  
Generalized Additive Mixed Model ◽  
Protected Forests ◽  
Small Indian Mongoose

AbstractOkinawa Island, Japan, is a globally important biodiversity hotspot. Three endemic bird species, Okinawa rail (Hypotaenidia okinawae), Okinawa woodpecker (Dendrocopos noguchii), and Okinawa robin (Larvivora namiyei), are found only in the Yambaru region of the northern part of Okinawa Island. In order to conserve endemic species, it is important to determine the effect of alien species on endemic species. We conducted playback surveys four times every three years from 2007 to 2016 to evaluate the recent distribution of these three forest-dwelling bird species during the breeding season. Then, the association between the numbers of detections of these three species with the invasive mongoose density and the hardwood forest area was evaluated with a generalized additive mixed model (GAMM). The results showed that the distribution areas of these bird species have been recovering since the 2007 within the small Indian mongoose (Urva auropunctata) controlled area. The GAMM results showed that these bird species were abundant in areas with fewer small Indian mongooses and larger areas of hardwood forests. Thus, the mongoose had a negative impact not only on the flightless rails but also on the woodpeckers and the robins. In recent years, most of the old-growth forests have been designated as protected forests, and large-scale logging is no longer taking place in Yambaru. Eradication of the mongoose is particularly important for the conservation of these three endemic bird species.

scholarly journals Spreading free-riding snow sports represent a novel serious threat for wildlife

2007 ◽  
Vol 274 (1614) ◽  
pp. 1219-1224 ◽  
Author(s):  
Raphaël Arlettaz ◽  
Patrick Patthey ◽  
Marjana Baltic ◽  
Thomas Leu ◽  
Michael Schaub ◽  
...  
Keyword(s):  
Large Scale ◽  
Physiological Stress ◽  
Negative Impact ◽  
Bird Species ◽  
Free Riding ◽  
Swiss Alps ◽  
Impact Factors ◽  
Invasive Technique ◽  
Factors Affecting ◽  
Snow Sports

Stress generated by humans on wildlife by continuous development of outdoor recreational activities is of increasing concern for biodiversity conservation. Human disturbance often adds to other negative impact factors affecting the dynamics of vulnerable populations. It is not known to which extent the rapidly spreading free-riding snow sports actually elicit detrimental stress (allostatic overload) upon wildlife, nor what the potential associated fitness and survival costs are. Using a non-invasive technique, we evaluated the physiological stress response induced by free-riding snow sports on a declining bird species of Alpine ecosystems. The results of a field experiment in which radiomonitored black grouse ( Tetrao tetrix ) were actively flushed from their snow burrows once a day during four consecutive days showed an increase in the concentration of faecal stress hormone (corticosterone) metabolites after disturbance. A large-scale comparative analysis across the southwestern Swiss Alps indicated that birds had higher levels of these metabolites in human-disturbed versus undisturbed habitats. Disturbance by snow sport free-riders appears to elevate stress, which potentially represents a new serious threat for wildlife. The fitness and survival costs of allostatic adjustments have yet to be estimated.

Accidental Sustainability

2017 ◽  
Author(s):  
Geoffrey Jones
Keyword(s):  
Large Scale ◽  
Negative Impact ◽  
Positive Impact ◽  
Organic Food ◽  
The United States ◽  
Air Travel ◽  
Business Leaders ◽  
Natural Beauty ◽  
And Diffusion ◽  
Whole Foods

This chapter examines the scaling and diffusion of green entrepreneurship between 1980 and the present. It explores how entrepreneurs and business leaders promoted the idea that business and sustainability were compatible. It then examines the rapid growth of organic foods, natural beauty, ecological architecture, and eco-tourism. Green firms sometimes grew to a large scale, such as the retailer Whole Foods Market in the United States. The chapter explores how greater mainstreaming of these businesses resulted in a new set of challenges arising from scaling. Organic food was now transported across large distances causing a negative impact on carbon emissions. More eco-tourism resulted in more air travel and bigger airports. In other industries scaling had a more positive impact. Towns were major polluters, so more ecological buildings had a positive impact.

scholarly journals Socioeconomic Conditions and Landowners’ Perception Affect the Intention to Restore Polylepis Forests in the Central Andes of Peru

Forests ◽  
2021 ◽  
Vol 12 (2) ◽  
pp. 118
Author(s):  
Lunel Joseph ◽  
Raúl Marino Yaranga Cano ◽  
Marco Arizapana-Almonacid ◽  
Marcela Venelli Pyles ◽  
Flávia Freire de Siqueira ◽  
...  
Keyword(s):  
Rural Communities ◽  
Mixed Model ◽  
Linear Mixed Model ◽  
Negative Impact ◽  
Positive Impact ◽  
Central Andes ◽  
Socioeconomic Conditions ◽  
Native Flora ◽  
The Family ◽  
Andes Region

Research Highlights: Families more dependent on crops as the main source of income of properties have a greater intention of restoring Polylepis forest areas. However, this intention reduces with the increase of family dependence on subsistence products supplied by Polylepis forests. Properties where the chances of restoration of Polylepis forests are greater are those where the educational and technical level is better. Objectives: We aimed to comprehend which socioeconomic factors of rural properties and families’ perception were determinant for the intention to restore Polylepis forests in the Central Andes region of Peru. Material and Methods: We collected data through visits and the application of questionnaires. We selected 13 rural communities in the Tulumayo River Basin. We randomly sampled 10 to 20 families in each community, depending on its size, totaling 200 families. We used generalized linear mixed model (GLMM) to test which variables affect the intention to restore the forest. Results: When crops are the main source of income in the property, the families have more intention to restore Polylepis areas, on the other hand, when Polylepis forests are an important source of products for the family subsistence, the intention to restore forests reduces, indicating that higher technological status has a positive impact on restoration. The perception that Polylepis forests are important for the existence of water sources had a positive impact on the families’ intention to restore the areas. However, the perception that Polylepis forests are important for native flora persistence had a negative impact on the intention to restore their areas. Conclusions: Our results showed that investment in improving the productivity of the properties and in the education of their landowners should increase the success of eventual programs for restoration of Polylepis forests.

scholarly journals Prevalence and genetic diversity of avian haemosporidian parasites in wild bird species of the order Columbiformes

2021 ◽  
Author(s):  
Yvonne R. Schumm ◽  
Dimitris Bakaloudis ◽  
Christos Barboutis ◽  
Jacopo G. Cecere ◽  
Cyril Eraud ◽  
...  
Keyword(s):  
Host Species ◽  
Large Scale ◽  
Phylogenetic Reconstruction ◽  
Bird Species ◽  
Avian Species ◽  
Blood Parasites ◽  
Migration Strategy ◽  
Haemosporidian Parasites ◽  
Multiplex Pcr Assay ◽  
And Migration

AbstractDiseases can play a role in species decline. Among them, haemosporidian parasites, vector-transmitted protozoan parasites, are known to constitute a risk for different avian species. However, the magnitude of haemosporidian infection in wild columbiform birds, including strongly decreasing European turtle doves, is largely unknown. We examined the prevalence and diversity of haemosporidian parasites Plasmodium, Leucocytozoon and subgenera Haemoproteus and Parahaemoproteus in six species of the order Columbiformes during breeding season and migration by applying nested PCR, one-step multiplex PCR assay and microscopy. We detected infections in 109 of the 259 screened individuals (42%), including 15 distinct haemosporidian mitochondrial cytochrome b lineages, representing five H. (Haemoproteus), two H. (Parahaemoproteus), five Leucocytozoon and three Plasmodium lineages. Five of these lineages have never been described before. We discriminated between single and mixed infections and determined host species-specific prevalence for each parasite genus. Observed differences among sampled host species are discussed with reference to behavioural characteristics, including nesting and migration strategy. Our results support previous suggestions that migratory birds have a higher prevalence and diversity of blood parasites than resident or short-distance migratory species. A phylogenetic reconstruction provided evidence for H. (Haemoproteus) as well as H. (Parahaemoproteus) infections in columbiform birds. Based on microscopic examination, we quantified parasitemia, indicating the probability of negative effects on the host. This study provides a large-scale baseline description of haemosporidian infections of wild birds belonging to the order Columbiformes sampled in the northern hemisphere. The results enable the monitoring of future changes in parasite transmission areas, distribution and diversity associated with global change, posing a potential risk for declining avian species as the European turtle dove.

Nonlinearities in bilingual visual word recognition: An introduction to generalized additive modeling

2021 ◽  
pp. 1-8
Author(s):  
Koji Miwa ◽  
Harald Baayen
Keyword(s):  
Lexical Decision ◽  
Tensor Product ◽  
Nonlinear Interaction ◽  
Mixed Model ◽  
Nonlinear Effects ◽  
Regression Splines ◽  
Generalized Additive Mixed Model ◽  
Generalized Additive Modeling ◽  
Additive Modeling ◽  
Cross Language

Abstract This paper introduces the generalized additive mixed model (GAMM) and the quantile generalized additive mixed model (QGAMM) through reanalyses of bilinguals’ lexical decision data from Dijkstra et al. (2010) and Miwa et al. (2014). We illustrate how regression splines can be used to test for nonlinear effects of cross-language similarity in form as well as for controlling experimental trial effects. We further illustrate the tensor product smooth for a nonlinear interaction between cross-language semantic similarity and word frequency. Finally, we show how the QGAMM helps clarify whether the effect of a particular predictor is constant across distributions of RTs.

scholarly journals MegaLMM: Mega-scale linear mixed models for genomic predictions with thousands of traits

2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Daniel E. Runcie ◽  
Jiayi Qu ◽  
Hao Cheng ◽  
Lorin Crawford
Keyword(s):  
Genomic Prediction ◽  
Large Scale ◽  
Mixed Model ◽  
Human Genetics ◽  
Linear Mixed Effect Model ◽  
Mixed Effect ◽  
Statistical Framework ◽  
Effect Model ◽  
Plant Data ◽  
Genetic Value

AbstractLarge-scale phenotype data can enhance the power of genomic prediction in plant and animal breeding, as well as human genetics. However, the statistical foundation of multi-trait genomic prediction is based on the multivariate linear mixed effect model, a tool notorious for its fragility when applied to more than a handful of traits. We present , a statistical framework and associated software package for mixed model analyses of a virtually unlimited number of traits. Using three examples with real plant data, we show that can leverage thousands of traits at once to significantly improve genetic value prediction accuracy.

scholarly journals Wood-inhabiting fungal responses to forest naturalness vary among morpho-groups

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Purhonen Jenna ◽  
Abrego Nerea ◽  
Komonen Atte ◽  
Huhtinen Seppo ◽  
Kotiranta Heikki ◽  
...  
Keyword(s):  
Tree Species ◽  
Boreal Forests ◽  
Negative Impact ◽  
Important Variable ◽  
Host Tree ◽  
Conservation Areas ◽  
Fungal Community Composition ◽  
Forest Sites ◽  
Protected Forests ◽  
Host Tree Species

AbstractThe general negative impact of forestry on wood-inhabiting fungal diversity is well recognized, yet the effect of forest naturalness is poorly disentangled among different fungal groups inhabiting dead wood of different tree species. We studied the relationship between forest naturalness, log characteristics and diversity of different fungal morpho-groups inhabiting large decaying logs of similar quality in spruce dominated boreal forests. We sampled all non-lichenized fruitbodies from birch, spruce, pine and aspen in 12 semi-natural forest sites of varying level of naturalness. The overall fungal community composition was mostly determined by host tree species. However, when assessing the relevance of the environmental variables separately for each tree species, the most important variable varied, naturalness being the most important explanatory variable for fungi inhabiting pine and aspen. More strikingly, the overall species richness increased as the forest naturalness increased, both at the site and log levels. At the site scale, the pattern was mostly driven by the discoid and pyrenoid morpho-groups inhabiting pine, whereas at the log scale, it was driven by pileate and resupinate morpho-groups inhabiting spruce. Although our study demonstrates that formerly managed protected forests serve as effective conservation areas for most wood-inhabiting fungal groups, it also shows that conservation planning and management should account for group- or host tree -specific responses.

scholarly journals A Phylogenomic Supertree of Birds

Diversity ◽  
2019 ◽  
Vol 11 (7) ◽  
pp. 109 ◽  
Author(s):  
Rebecca T. Kimball ◽  
Carl H. Oliveros ◽  
Ning Wang ◽  
Noor D. White ◽  
F. Keith Barker ◽  
...  
Keyword(s):  
Large Scale ◽  
Sequence Data ◽  
Bird Species ◽  
Divide And Conquer ◽  
Clear Understanding ◽  
Whole Genome ◽  
Efficient Manner ◽  
Sequence Capture ◽  
Branch Lengths ◽  
Supertree Methods

It has long been appreciated that analyses of genomic data (e.g., whole genome sequencing or sequence capture) have the potential to reveal the tree of life, but it remains challenging to move from sequence data to a clear understanding of evolutionary history, in part due to the computational challenges of phylogenetic estimation using genome-scale data. Supertree methods solve that challenge because they facilitate a divide-and-conquer approach for large-scale phylogeny inference by integrating smaller subtrees in a computationally efficient manner. Here, we combined information from sequence capture and whole-genome phylogenies using supertree methods. However, the available phylogenomic trees had limited overlap so we used taxon-rich (but not phylogenomic) megaphylogenies to weave them together. This allowed us to construct a phylogenomic supertree, with support values, that included 707 bird species (~7% of avian species diversity). We estimated branch lengths using mitochondrial sequence data and we used these branch lengths to estimate divergence times. Our time-calibrated supertree supports radiation of all three major avian clades (Palaeognathae, Galloanseres, and Neoaves) near the Cretaceous-Paleogene (K-Pg) boundary. The approach we used will permit the continued addition of taxa to this supertree as new phylogenomic data are published, and it could be applied to other taxa as well.

scholarly journals Has the invasive mongoose Herpestes javanicus yet reached the island of Taveuni, Fiji?

Oryx ◽  
2004 ◽  
Vol 38 (4) ◽  
pp. 457-460 ◽  
Author(s):  
Craig G. Morley
Keyword(s):  
Endemic Species ◽  
Management Strategy ◽  
World Heritage ◽  
World Heritage Site ◽  
Feral Cats ◽  
Heritage Site ◽  
Herpestes Javanicus ◽  
Indian Mongoose ◽  
Small Indian Mongoose

The Fijian island of Taveuni is being proposed as a potential World Heritage Site because much of its flora and fauna, including many endemic species, remains intact. The greatest threat facing Taveuni's wildlife is a potential incursion by the invasive small Indian mongoose Herpestes javanicus from nearby islands, and anecdotal reports have suggested that the mongoose may already be present. To determine if mongooses were present on Taveuni 40 traps were set in two locations close to the main ports of entry, in typical mongoose habitat. Normally mongooses are easily caught if they are present, but in 204 trap nights none were captured, although eight feral cats and 11 rats were caught. None of the 31 people questioned from around the island had seen the mongoose. A list of seven recommendations is provided for a management strategy to prevent any possible incursion by mongooses and to eradicate any arrivals at the earliest opportunity.

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