Morphological variability and molecular characterization of Mawsonascaris australis (Johnston & Mawson, 1943) (Nematoda: Ascaridoidea: Acanthocheilidae) from the brown guitarfish Rhinobatos schlegelii Müller & Henle (Rhinopristiformes: Rhinobatidae)

2017 ◽  
Vol 92 (6) ◽  
pp. 760-764 ◽  
Author(s):  
W.-T. Zhao ◽  
Z. Xu ◽  
L. Li
Keyword(s):  
Internal Transcribed Spacer ◽  
Morphological Variability ◽  
Intraspecific Variability ◽  
Interspecific Variation ◽  
Fish Host ◽  
Molecular Approaches ◽  
The Taiwan Strait ◽  
The Right ◽  
First Time

AbstractA rare ascaridoid species, Mawsonascaris australis (Johnston & Mawson, 1943), is reported from the Taiwan Strait for the first time, and the brown guitarfish Rhinobatos schlegelii Müller & Henle (Rhinopristiformes: Rhinobatidae) represents a new fish host. The detailed morphology of M. australis was studied using light and scanning electron microscopy (SEM) based on the newly collected specimens. The results revealed some important, but previously unreported or erroneous, morphological features, including the lateral alae starting well posterior to the base of the ventrolateral lips, the presence of one pair of double paracloacal papillae and a single, small precloacal median papilla on the anterior margin of the cloaca. In addition, in order to determine whether the morphometric difference in the relative lengths of the right and left spicules represents intraspecific or interspecific variation, specimens of M. australis were characterized using molecular approaches by sequencing and analysing the ribosomal internal transcribed spacer (ITS) and mitochondrial cox1 genes. The results indicate that this morphometric difference represents intraspecific variability.

scholarly journals Investigation and analysis of the fungal community structure in moldy Lonicerae japonicae Flos through ITS2 sequencing

2021 ◽  
Vol 233 ◽  
pp. 02031
Author(s):  
Zhenying Liu ◽  
Yan Zhao ◽  
Lingna Wang ◽  
Gaobin Pu ◽  
Yongqing Zhang
Keyword(s):  
Internal Transcribed Spacer ◽  
Theoretical Basis ◽  
Fungal Communities ◽  
Mold Growth ◽  
Fungal Contamination ◽  
Fungal Community Structure ◽  
Class Level ◽  
First Time ◽  
Comprehensive Characterization

Lonicerae japonicae Flos is a traditional Chinese medicine that has the effect is used for clearing away heat and detoxification. When stored improperly, this medicine is susceptible to mold growth, causing fungal contamination, reducing its safety and clinical efficacy. In order to understand the fungal contamination of Lonicerae japonicae Flos, we utilized the Illumina NovaSeq6000 platform to characterize fungal communities associated with five moldy Lonicerae japonicae Flos samples from warehouses in China via the sequencing of fungal internal transcribed spacer 2 regions. These analyses led us to identify 3 phyla, 5 classes, 7 orders, 9 families, 13 genera, and 20 species of fungi in these samples. Of these, Ascomycota was the dominant phylum, while Cysticomycetes, Ascomycetes, and Staphylococci were relatively dominant at the class level, and the most prevalent genera were Aspergillus, Penicillium, Xanthomonas, Microcystis, Talaromyces, and Erysiphe with relative abundance values of 79%, 21%, 94%, 100%, and 98%. In summary, in the present study we conducted the ITS-based comprehensive characterization of fungal communities associated with Lonicerae japonicae Flos for the first time. This approach aims to facilitate the early detection of fungal contamination in Lonicerae japonicae Flos, providing a theoretical basis for the study of anti-mold technologies.

Morphological and molecular characterization of two species of Gelidium (Gelidiales, Rhodophyta) from Mexico: G. nayaritense sp. nov. and the new record of G. sanyaense

Phytotaxa ◽  
2021 ◽  
Vol 527 (3) ◽  
pp. 161-176
Author(s):  
NATALY QUIROZ-GONZÁLEZ ◽  
MA. EDITH PONCE-MÁRQUEZ ◽  
NORMA LÓPEZ-GÓMEZ ◽  
DENÍ RODRÍGUEZ
Keyword(s):  
Gulf Of California ◽  
Phylogenetic Analyses ◽  
Distinct Species ◽  
Tropical Region ◽  
Mexican Pacific ◽  
Molecular Approaches ◽  
Diagnostic Characteristics ◽  
Morphological Differences ◽  
First Time

Gelidium pusillum is a species reported from the northern Gulf of California to the tropical region of the Mexican Pacific, but there is wide morphological variation among populations. The objective of this research was to evaluate of the Mexican species using morphological and molecular approaches, with the markers rbcL and COI-5P. This study examined 12 samples from four sites in the Mexican tropical Pacific. Phylogenetic analyses resolved these specimens within two clades separated from the topotype material of G. pusillum. The main morphological differences with other Mexican and phylogenetic closely related species were size, branching pattern, branching order, distribution of internal rhizoidal filaments, and shape of the tetrasporangial sori. The sequence divergences between these clades and the morphological differences support their representing distinct species so that Gelidium nayaritense sp. nov. is proposed for tropical specimens of the Mexican Pacific, whose diagnostic characteristics are the little or absent branching, its small size, as well as the presence of internal rhizoidal filaments concentrated in the subcortex, further G. sanyaense is register for first time from Mexico and Eastern Pacific.

scholarly journals Identification and molecular characterization of novel viruses in Ugandan cattle

2022 ◽  
Author(s):  
Stephen Balinandi ◽  
Juliette Hayer ◽  
Harindranath Cholleti ◽  
Julius Lutwama ◽  
Michelle Wille ◽  
...  
Keyword(s):  
Public Health ◽  
Geographical Location ◽  
Zoonotic Diseases ◽  
Virus Family ◽  
Blood Samples ◽  
Molecular Approaches ◽  
Reservoir Hosts ◽  
First Time ◽  
Family Rhabdoviridae

The risk for the emergence of novel viral zoonotic diseases in animals and humans in Uganda is high given its geographical location with high biodiversity. We aimed to identify and characterize viruses in 175 blood samples from cattle selected in Uganda using molecular approaches. We identified 8 viral species belonging to 4 families (Flaviviridae, Peribunyaviridae, Reoviridae and Rhabdoviridae) and 6 genera (Hepacivirus, Pestivirus, Orthobunyavirus, Coltivirus, Dinovernavirus and Ephemerovirus). Four viruses were novel and tetantively named as Zikole virus (Family: Flaviviridae), Zeboroti virus (Family: Reoviridae), Zebtine virus (Family: Rhabdoviridae) and Kokolu virus (Family: Rhabdoviridae). In addition, Bovine hepacivirus, Obodhiang virus, Aedes pseudoscutellaris reovirus and Schmallenberg virus were identified for the first time in Ugandan cattle. We report a broad range of viruses including novel ones in the blood of cattle likely as reservoir hosts for emergence of novel viruses with serious public health implications.

Characterization of Dicrocoelium dendriticum haplotypes from sheep and cattle in Iran based on the internal transcribed spacer 2 (ITS-2) and NADH dehydrogenase gene (nad1)

2013 ◽  
Vol 89 (2) ◽  
pp. 158-164 ◽  
Author(s):  
S. Gorjipoor ◽  
M. Moazeni ◽  
H. Sharifiyazdi
Keyword(s):  
Internal Transcribed Spacer ◽  
Nadh Dehydrogenase ◽  
Sequence Data ◽  
Geographic Location ◽  
Nucleotide Substitutions ◽  
Internal Transcribed Spacer 2 ◽  
Dicrocoelium Dendriticum ◽  
Dehydrogenase Gene ◽  
First Time

AbstractThe present study assessed whether the genetic variation among different hosts (sheep and cattle) and geographical isolates (n= 28) of Dicrocoelium dendriticum from Iran is present based on mitochondrial (nad1) and ribosomal (ITS-2) DNA markers. Molecular analysis revealed the presence of at least ten and two distinct haplotypes in the NADH dehydrogenase gene (nad1) and internal transcribed spacer 2 (ITS-2), respectively. The nad1 and ITS-2 sequence data were deposited in GenBank under accession numbers, JX050110–134 and JQ966972–3. According to the results of our study, ND-D and ITS-A are established as being the predominant haplotypes of D. dendriticum in Iran. The Iranian isolates showed a higher intraspecific genetic diversity of 0–0.97% for nad1, compared to 0–0.42% for ITS-2. The alignment and comparison of nad1 and ITS-2 sequences revealed eight and one polymorphic sites, respectively. In the nad1 sequences, six were silent and two nucleotide substitutions were responsible for amino acid alterations. A phylogenetic analysis of the sequence data revealed that host associations and geographic location are not likely useful markers for D. dendriticum haplotype classification. Consequently, sequencing results obtained from the nad1 gene as a mitochondrial marker for the first time in this study would provide a valuable tool to analyse further molecular details of D. dendriticum worldwide.

scholarly journals The stapes of Thrinaxodon Seeley, 1894 and Galesaurus Owen, 1859: a case of study for intraspecific variability in basal cynodonts

2021 ◽  
Author(s):  
Leandro C. GAETANO ◽  
Fernando ABDALA
Keyword(s):  
Morphological Variation ◽  
Morphological Variability ◽  
Intraspecific Variability ◽  
Complete Characterization ◽  
Early Triassic ◽  
Positive Allometry ◽  
Qualitative And Quantitative ◽  
Intraspecific Morphological Variation ◽  
Counterintuitive Result

We surveyed the stapedial anatomy of Thrinaxodon liorhinus Seeley, 1894 and Galesaurus planiceps Owen, 1859, two iconic Early Triassic basal cynodonts. The complete characterization of this bone and the analysis of its morphological variability along the ontogeny within each taxon were possible through the study of eleven elements of Thrinaxodon Seeley, 1894 and nine of Galesaurus Owen, 1859. Our results highlight notable qualitative and quantitative differences among specimens of the same species. Stapes growth model in Galesaurus shows a positive allometry on the lateromedial length and on the anteroposterior width, whereas in Thrinaxodon there is a negative allometry in the anteroposterior width but the lateromedial length is isometric. This study offers a counterintuitive result of inordinate high intraspecific morphological variation of the stapes of basal non-mammaliaform cynodonts.

Taxonomic assessment of Australian Eocyzicus species (Crustacea: Branchiopoda: Spinicaudata)

Zootaxa ◽  
2018 ◽  
Vol 4410 (3) ◽  
pp. 401 ◽  
Author(s):  
LISA TIPPELT ◽  
MARTIN SCHWENTNER
Keyword(s):  
Species Delimitation ◽  
Phylogenetic Analyses ◽  
Morphological Variability ◽  
Intraspecific Variability ◽  
Principal Component ◽  
Interspecific Variation ◽  
Canonical Variate ◽  
Molecular Phylogenetic ◽  
Morphological Species ◽  
Species Descriptions

Herein we describe nine species of Eocyzicus from Australia and re-describe the morphological variability of Eocyzicus parooensis Richter & Timms, 2005 and Eocyzicus argillaquus Timms & Richter, 2009. All species were previously delimited by molecular phylogenetic analyses and the species descriptions are based on the same individuals. Characters were scored with the aid of the taxonomic software DELTA. The morphological analyses largely corroborated the previously delimited species despite high levels of intraspecific variability that overlapped with interspecific variation in many instances. Morphological species delimitation was generally supported by principal component and canonical variate analyses. Characters best suited for morphological species identification were the numbers of growth lines on the carapace, the number of telsonic spines and the number of setae on the furca. 

TBE in Sweden

2020 ◽  
Keyword(s):  
Genetic Characterization ◽  
Immunoglobulin M ◽  
Enzyme Linked Immunosorbent Assay ◽  
Second Phase ◽  
Serum Samples ◽  
Tick Borne Encephalitis ◽  
Specific Immunoglobulin ◽  
Tick Borne Encephalitis Virus ◽  
First Time

Tick-borne encephalitis virus (TBEV) was isolated for the first time in Sweden in 1958 (from ticks and from 1 tick-borne encephalitis [TBE] patient).1 In 2003, Haglund and colleagues reported the isolation and antigenic and genetic characterization of 14 TBEV strains from Swedish patients (samples collected 1991–1994).2 The first serum sample, from which TBEV was isolated, was obtained 2–10 days after onset of disease and found to be negative for anti-TBEV immunoglobulin M (IgM) by enzyme-linked immunosorbent assay (ELISA), whereas TBEV-specific IgM (and TBEV-specific immunoglobulin G/cerebrospinal fluid [IgG/CSF] activity) was demonstrated in later serum samples taken during the second phase of the disease.

Cas de suie de l'érable et de chancre du peuplier dans le canton de Genève

2016 ◽  
Vol 167 (2) ◽  
pp. 98-104
Author(s):  
Bastien Cochard ◽  
François Lefort
Keyword(s):  
Internal Transcribed Spacer ◽  
Pathogenic Fungi ◽  
Fungal Flora ◽  
Acer Campestre ◽  
Cytospora Chrysosperma ◽  
Pure Cultures ◽  
Populus X Euramericana ◽  
Bark Peeling ◽  
Specific Symptoms ◽  
First Time

A case of sooty bark disease and Cytospora poplar canker in the Canton of Geneva In summer 2014, a case of sooty bark disease caused by Cryptostroma corticale on an individual field maple (Acer campestre) and two cases of poplar canker due to Cytospora chrysosperma on Populus x euramericana were identified genetically for the first time on the territory of the Canton of Geneva. In both cases, the trees presented signs of very advanced dieback, accompanied by specific symptoms such as bark peeling and sooty plaques for the maple, and loose twisted bark layers and black colouring of the wood in structural branches of the poplars. Sampling was carried out in the symptomatic areas and components of the fungal flora were isolated in pure cultures in order to identify any pathogenic fungi. The molecular analysis of the rDNA internal transcribed spacer (ITS) sequences made it possible to identify precisely all pure isolates obtained. The results showed a majority presence of C. corticale in the maple tree, and of C. chrysosperma in the two poplars. Both these fungi are little known in Switzerland and Europe, and their presence is maybe associated with changes in the climate.

Chemical Constituents and Antibacterial Activity of Cissus Aralioides.

2020 ◽  
Vol 17 ◽  
Author(s):  
Balogun Olaoye Solomon ◽  
Ajayi Olukayode Solomon ◽  
Owolabi Temitayo Abidemi ◽  
Oladimeji Abdulkarbir Oladele ◽  
Liu Zhiqiang
Keyword(s):  
Plant Extract ◽  
Chemical Constituents ◽  
Ethyl Acetate Fraction ◽  
Antibacterial Activities ◽  
Sub Saharan Africa ◽  
Chromatographic Purification ◽  
Whole Plant ◽  
Sub Saharan ◽  
First Time

: Cissus aralioides is a medicinal plant used in sub-Saharan Africa for treatment of infectious diseases; however the chemical constituents of the plant have not been investigated. Thus, in this study, attempt was made at identifying predominant phytochemical constituents of the plant through chromatographic purification and silylation of the plant extract, and subsequent characterization using spectroscopic and GC-MS techniques. The minimum inhibitory concentration (MICs) for the antibacterial activities of the plant extract, chromatographic fractions and isolated compounds were also examined. Chromatographic purification of the ethyl acetate fraction from the whole plant afforded three compounds: β-sitosterol (1), stigmasterol (2) and friedelin (3). The phytosterols (1 and 2) were obtained together as a mixture. The GC-MS analysis of silylated extract indicated alcohols, fatty acids and sugars as predominant classes, with composition of 24.62, 36.90 and 26.52% respectively. Results of MICs indicated that friedelin and other chromatographic fractions had values (0.0626-1.0 mg/mL) comparable with the standard antibiotics used. Characterization of natural products from C. aralioides is being reported for the first time in this study.

Feasibility and Evaluation of Automated Methods for Radiolabeling of Radiopharmaceutical Kits with Gallium-68

2019 ◽  
Vol 12 (3) ◽  
pp. 229-237 ◽  
Author(s):  
Alban Revy ◽  
François Hallouard ◽  
Sandrine Joyeux-Klamber ◽  
Andrea Skanjeti ◽  
Catherine Rioufol ◽  
...  
Keyword(s):  
The European Union ◽  
Preparation Time ◽  
Limit Of Quantification ◽  
Manual Method ◽  
Personnel Costs ◽  
Automated Method ◽  
Gallium 68 ◽  
The Right ◽  
First Time ◽  
Automated Methods

Objective: Recent gallium-68 labeled peptides are of increasing interest in PET imaging in nuclear medicine. Somakit TOC® is a radiopharmaceutical kit registered in the European Union for the preparation of [68Ga]Ga-DOTA-TOC used for the diagnosis of neuroendocrine tumors. Development of a labeling process using a synthesizer is particularly interesting for the quality and reproducibility of the final product although only manual processes are described in the Summary of Product (SmPC) of the registered product. The aim of the present study was therefore to evaluate the feasibility and value of using an automated synthesizer for the preparation of [68Ga]Ga-DOTA-TOC according to the SmPC of the Somakit TOC®. Methods: Three methods of preparation were compared; each followed the SmPC of the Somakit TOC®. Over time, overheads, and overexposure were evaluated for each method. Results: Mean±SD preparation time was 26.2±0.3 minutes for the manual method, 28±0.5 minutes for the semi-automated, and 40.3±0.2 minutes for the automated method. Overcost of the semi-automated method is 0.25€ per preparation for consumables and from 0.58€ to 0.92€ for personnel costs according to the operator (respectively, technician or pharmacist). For the automated method, overcost is 70€ for consumables and from 4.06€ to 6.44€ for personnel. For the manual method, extremity exposure was 0.425mSv for the right finger, and 0.350mSv for the left finger; for both the semi-automated and automated method extremity exposure were below the limit of quantification. Conclusion: The present study reports for the first time both the feasibility of using a [68Ga]- radiopharmaceutical kit with a synthesizer and the limits for the development of a fully automated process.

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