scholarly journals Unique scales preserve self-similar integrate-and-fire functionality of neuronal clusters

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Anar Amgalan ◽  
Patrick Taylor ◽  
Lilianne R. Mujica-Parodi ◽  
Hava T. Siegelmann

AbstractBrains demonstrate varying spatial scales of nested hierarchical clustering. Identifying the brain’s neuronal cluster size to be presented as nodes in a network computation is critical to both neuroscience and artificial intelligence, as these define the cognitive blocks capable of building intelligent computation. Experiments support various forms and sizes of neural clustering, from handfuls of dendrites to thousands of neurons, and hint at their behavior. Here, we use computational simulations with a brain-derived fMRI network to show that not only do brain networks remain structurally self-similar across scales but also neuron-like signal integration functionality (“integrate and fire”) is preserved at particular clustering scales. As such, we propose a coarse-graining of neuronal networks to ensemble-nodes, with multiple spikes making up its ensemble-spike and time re-scaling factor defining its ensemble-time step. This fractal-like spatiotemporal property, observed in both structure and function, permits strategic choice in bridging across experimental scales for computational modeling while also suggesting regulatory constraints on developmental and evolutionary “growth spurts” in brain size, as per punctuated equilibrium theories in evolutionary biology.

Diversity ◽  
2019 ◽  
Vol 11 (12) ◽  
pp. 234 ◽  
Author(s):  
Eric A. Griffin ◽  
Joshua G. Harrison ◽  
Melissa K. McCormick ◽  
Karin T. Burghardt ◽  
John D. Parker

Although decades of research have typically demonstrated a positive correlation between biodiversity of primary producers and associated trophic levels, the ecological drivers of this association are poorly understood. Recent evidence suggests that the plant microbiome, or the fungi and bacteria found on and inside plant hosts, may be cryptic yet important drivers of important processes, including primary production and trophic interactions. Here, using high-throughput sequencing, we characterized foliar fungal community diversity, composition, and function from 15 broadleaved tree species (N = 545) in a recently established, large-scale temperate tree diversity experiment using over 17,000 seedlings. Specifically, we tested whether increases in tree richness and phylogenetic diversity would increase fungal endophyte diversity (the “Diversity Begets Diversity” hypothesis), as well as alter community composition (the “Tree Diversity–Endophyte Community” hypothesis) and function (the “Tree Diversity–Endophyte Function” hypothesis) at different spatial scales. We demonstrated that increasing tree richness and phylogenetic diversity decreased fungal species and functional guild richness and diversity, including pathogens, saprotrophs, and parasites, within the first three years of a forest diversity experiment. These patterns were consistent at the neighborhood and tree plot scale. Our results suggest that fungal endophytes, unlike other trophic levels (e.g., herbivores as well as epiphytic bacteria), respond negatively to increasing plant diversity.


2008 ◽  
Vol 4 (2) ◽  
pp. 179-182 ◽  
Author(s):  
Reuben Clements ◽  
Thor-Seng Liew ◽  
Jaap Jan Vermeulen ◽  
Menno Schilthuizen

The manner in which a gastropod shell coils has long intrigued laypersons and scientists alike. In evolutionary biology, gastropod shells are among the best-studied palaeontological and neontological objects. A gastropod shell generally exhibits logarithmic spiral growth, right-handedness and coils tightly around a single axis. Atypical shell-coiling patterns (e.g. sinistroid growth, uncoiled whorls and multiple coiling axes), however, continue to be uncovered in nature. Here, we report another coiling strategy that is not only puzzling from an evolutionary perspective, but also hitherto unknown among shelled gastropods. The terrestrial gastropod Opisthostoma vermiculum sp. nov. generates a shell with: (i) four discernable coiling axes, (ii) body whorls that thrice detach and twice reattach to preceding whorls without any reference support, and (iii) detached whorls that coil around three secondary axes in addition to their primary teleoconch axis. As the coiling strategies of individuals were found to be generally consistent throughout, this species appears to possess an unorthodox but rigorously defined set of developmental instructions. Although the evolutionary origins of O. vermiculum and its shell's functional significance can be elucidated only once fossil intermediates and live individuals are found, its bewildering morphology suggests that we still lack an understanding of relationships between form and function in certain taxonomic groups.


2021 ◽  
pp. 1-18
Author(s):  
Jacob A. Miller ◽  
Mark D'Esposito ◽  
Kevin S. Weiner

Stuss considered the human prefrontal cortex (pFC) as a “cognitive globe” [Stuss, D. T., & Benson, D. F. Neuropsychological studies of the frontal lobes. Psychological Bulletin, 95, 3–28, 1984] on which functions of the frontal lobe could be mapped. Here, we discuss classic and recent findings regarding the evolution, development, function, and cognitive role of shallow indentations or tertiary sulci in pFC, with the goal of using tertiary sulci to map the “cognitive globe” of pFC. First, we discuss lateral pFC (LPFC) tertiary sulci in classical anatomy and modern neuroimaging, as well as their development, with a focus on those within the middle frontal gyrus. Second, we discuss tertiary sulci in comparative neuroanatomy, focusing on primates. Third, we summarize recent findings showing the utility of tertiary sulci for understanding structural–functional relationships with functional network insights in ventromedial pFC and LPFC. Fourth, we revisit and update unresolved theoretical perspectives considered by C. Vogt and O. Vogt (Allgemeinere ergebnisse unserer hirnforschung. Journal für Psychologie und Neurologie, 25, 279–462, 1919) and F. Sanides (Structure and function of the human frontal lobe. Neuropsychologia, 2, 209–219, 1964) that tertiary sulci serve as landmarks for cortical gradients. Together, the consideration of these classic and recent findings indicate that tertiary sulci are situated in a unique position within the complexity of the “cognitive globe” of pFC: They are the smallest and shallowest of sulci in pFC, yet can offer insights that bridge spatial scales (microns to networks), modalities (functional connectivity to behavior), and species. As such, the map of tertiary sulci within each individual participant serves as a coordinate system specific to that individual on which functions may be further mapped. We conclude with new theoretical and methodological questions that, if answered in future research, will likely lead to mechanistic insight regarding the structure and function of human LPFC.


2020 ◽  
Vol 24 (5) ◽  
pp. 2711-2729 ◽  
Author(s):  
Joseph L. Gutenson ◽  
Ahmad A. Tavakoly ◽  
Mark D. Wahl ◽  
Michael L. Follum

Abstract. Large-scale hydrologic forecasts should account for attenuation through lakes and reservoirs when flow regulation is present. Globally generalized methods for approximating outflow are required but must contend with operational complexity and a dearth of information on dam characteristics at global spatial scales. There is currently no consensus on the best approach for approximating reservoir release rates in large spatial scale hydrologic forecasting, particularly at diurnal time steps. This research compares two parsimonious reservoir routing methods at daily steps: Döll et al. (2003) and Hanasaki et al. (2006). These reservoir routing methods have been previously implemented in large-scale hydrologic modeling applications and have been typically evaluated seasonally. These routing methods are compared across 60 reservoirs operated by the U.S. Army Corps of Engineers. The authors vary empirical coefficients for both reservoir routing methods as part of a sensitivity analysis. The method proposed by Döll et al. (2003) outperformed that presented by Hanasaki et al. (2006) at a daily time step and improved model skill over most run-of-the-river conditions. The temporal resolution of the model influences model performances. The optimal model coefficients varied across the reservoirs in this study and model performance fluctuates between wet years and dry years, and for different configurations such as dams in series. Overall, the method proposed by Döll et al. (2003) could enhance large-scale hydrologic forecasting, but can be subject to instability under certain conditions.


2020 ◽  
Vol 117 (33) ◽  
pp. 20244-20253 ◽  
Author(s):  
Muhua Zheng ◽  
Antoine Allard ◽  
Patric Hagmann ◽  
Yasser Alemán-Gómez ◽  
M. Ángeles Serrano

Structural connectivity in the brain is typically studied by reducing its observation to a single spatial resolution. However, the brain possesses a rich architecture organized over multiple scales linked to one another. We explored the multiscale organization of human connectomes using datasets of healthy subjects reconstructed at five different resolutions. We found that the structure of the human brain remains self-similar when the resolution of observation is progressively decreased by hierarchical coarse-graining of the anatomical regions. Strikingly, a geometric network model, where distances are not Euclidean, predicts the multiscale properties of connectomes, including self-similarity. The model relies on the application of a geometric renormalization protocol which decreases the resolution by coarse-graining and averaging over short similarity distances. Our results suggest that simple organizing principles underlie the multiscale architecture of human structural brain networks, where the same connectivity law dictates short- and long-range connections between different brain regions over many resolutions. The implications are varied and can be substantial for fundamental debates, such as whether the brain is working near a critical point, as well as for applications including advanced tools to simplify the digital reconstruction and simulation of the brain.


2014 ◽  
Vol 10 (8) ◽  
pp. 20140255 ◽  
Author(s):  
Jennifer A. H. Koop ◽  
Karen E. DeMatteo ◽  
Patricia G. Parker ◽  
Noah K. Whiteman

Understanding the mechanisms driving the extraordinary diversification of parasites is a major challenge in evolutionary biology. Co-speciation, one proposed mechanism that could contribute to this diversity is hypothesized to result from allopatric co-divergence of host–parasite populations. We found that island populations of the Galápagos hawk ( Buteo galapagoensis ) and a parasitic feather louse species ( Degeeriella regalis ) exhibit patterns of co-divergence across variable temporal and spatial scales. Hawks and lice showed nearly identical population genetic structure across the Galápagos Islands. Hawk population genetic structure is explained by isolation by distance among islands. Louse population structure is best explained by hawk population structure, rather than isolation by distance per se , suggesting that lice tightly track the recent population histories of their hosts. Among hawk individuals, louse populations were also highly structured, suggesting that hosts serve as islands for parasites from an evolutionary perspective. Altogether, we found that host and parasite populations may have responded in the same manner to geographical isolation across spatial scales. Allopatric co-divergence is likely one important mechanism driving the diversification of parasites.


2011 ◽  
Vol 139 (2) ◽  
pp. 444-456 ◽  
Author(s):  
Jordan T. Dawe ◽  
Philip H. Austin

Abstract Direct calculations of the entrainment and detrainment of air into and out of clouds require knowledge of the relative velocity difference between the air and the cloud surface. However, a discrete numerical model grid forces the distance moved by a cloud surface over a time step to be either zero or the width of a model grid cell. Here a method for the subgrid interpolation of a cloud surface on a discrete numerical model grid is presented. This method is used to calculate entrainment and detrainment rates for a large-eddy simulation (LES) model, which are compared with rates calculated via the direct flux method of Romps. The comparison shows good agreement between the two methods as long as the model clouds are well resolved by the model grid spacing. This limitation of this technique is offset by the ability to resolve fluxes on much finer temporal and spatial scales, making it suitable for calculating entrainment and detrainment profiles for individual clouds.


2018 ◽  
Vol 2018 ◽  
pp. 1-6
Author(s):  
Rasim B. Aslanov ◽  
Leman M. Dashdemirova ◽  
Oktay Z. Alekperov ◽  
Azad R. Abdurahimov ◽  
Oktay K. Gasymov

The relationship between structure, dynamics, and function of biomolecules is a fundamental interest of biophysics. Protein dynamics drastically vary in temporal and spatial scales. The function of a particular protein determines the significance of a distinct type of dynamics. Here, we investigate the influence of hydration water on the dynamics of a protein called silk fibroin. Particular interest is to investigate the protein dynamics using thermal decay of the free radicals induced by ultraviolet irradiation. The full decay of the free radicals occurs at very wide temperature region (120 K–340 K). Three distinct regions with transition points of ∼135 K, 205 K, and 279 K are apparent in the thermal decay curves of hydrated fibroin samples. The first transition (∼135 K) that leads 2–6% increase of total spins was observed only in the decay curves of fibroin submerged in 40% and 50% glycerol. The second transition (∼205 K) was invariant for all samples, hydrated and dry fibroins. The third transition of 279 K common for all hydrated fibroin samples was shifted about 84 K to a higher temperature of 363 K in dry fibroin. The thermal transitions at 205 K and 279 K are weakly and strongly, respectively, coupled to water molecules. Nature of the free radicals participated in these transitions was identified. The significance of the findings for protein dynamics is discussed.


2016 ◽  
Vol 39 ◽  
Author(s):  
Michael L. Anderson

AbstractIn this reply to reviewers, I argue that, although reforming the taxonomy of psychology will lead to great insights in the cognitive sciences, it will not result in 1:1 structure-function mappings in the brain; we should expect to see a great deal of irreducible functional diversity in the brain at multiple spatial scales. I further clarify both the promise and the limitations of the analytic techniques for capturing functional diversity and interrogating the taxonomy of psychology; describe the ways in which neural reuse can help us understand human development; further explore the ways in which my proposals for integrating psychology, neuroscience, and evolutionary biology differ from the approach exemplified by contemporary evolutionary psychology; and lay out some new and hopefully interesting avenues for future research.


1995 ◽  
Vol 125 (5) ◽  
pp. 1085-1104 ◽  
Author(s):  
Volker Metz

Transition probabilities are calculated which make the construction of diffusions on finitely ramified fractals straightforward. In contrast to former approaches using Brouwer's Fixed Point Theorem, we consider an approximation procedure based on the iteration of a nonlinear mapL. Physically, this is done by ‘coarse-graining-renormalisation of finite electric resistor networks’. Mathematically, it is a convergence problem for quotients of Dirichlet forms on finite graphs. These graphs approximate finitely ramified fractals. The basic tool is a contraction theorem for the renormalisation mapLwhich allows the use of known results about nested fractals for non-nested (p.c.f. self-similar) ones. In general, the above contraction is not strict because several linear independent fixed points occur.


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