scholarly journals Depth dependence of climatic controls on soil microbial community activity and composition

2021 ◽  
Vol 1 (1) ◽  
Author(s):  
Nicholas C. Dove ◽  
Morgan E. Barnes ◽  
Kimber Moreland ◽  
Robert C. Graham ◽  
Asmeret Asefaw Berhe ◽  
...  
Keyword(s):  
Extracellular Enzyme ◽  
Large Temperature ◽  
Mean Annual Temperature ◽  
Deep Soil ◽  
Central California ◽  
Microbiome Composition ◽  
Soil Microbial ◽  
Depth Dependence ◽  
Temperature And Precipitation ◽  
Composition Changes

AbstractSubsoil microbiomes play important roles in soil carbon and nutrient cycling, yet our understanding of the controls on subsoil microbial communities is limited. Here, we investigated the direct (mean annual temperature and precipitation) and indirect (soil chemistry) effects of climate on microbiome composition and extracellular enzyme activity throughout the soil profile across two elevation-bioclimatic gradients in central California, USA. We found that microbiome composition changes and activity decreases with depth. Across these sites, the direct influence of climate on microbiome composition and activity was relatively lower at depth. Furthermore, we found that certain microbial taxa change in relative abundance over large temperature and precipitation gradients only in specific soil horizons, highlighting the depth dependence of the climatic controls on microbiome composition. Our finding that the direct impacts of climate are muted at depth suggests that deep soil microbiomes may lag in their acclimation to new temperatures with a changing climate.

scholarly journals Depth dependence of climatic controls on soil microbial community activity and composition

2021 ◽  
Author(s):  
Nicholas Dove ◽  
Morgan Barnes ◽  
Kimber Moreland ◽  
Robert Graham ◽  
Asmeret Berhe ◽  
...  
Keyword(s):  
Soil Chemistry ◽  
Large Temperature ◽  
Mean Annual Temperature ◽  
Deep Soil ◽  
Central California ◽  
Microbiome Composition ◽  
Soil Microbial ◽  
Depth Dependence ◽  
Temperature And Precipitation ◽  
Composition Changes

Abstract Subsoil microbiomes play important roles in soil carbon and nutrient cycling, yet our understanding of the controls on microbial communities in the subsoil is limited. Here, we investigate the direct (mean annual temperature and precipitation) and indirect (soil chemistry) effects of climate on microbiome composition and activity throughout the soil profile across two elevation-bioclimatic gradients in central California, USA. We show that microbiome composition changes and activity decreases with depth. Across these sites, the direct influence of climate on microbiome composition and activity was relatively lower at depth. Furthermore, we find that certain microbial taxa change in relative abundance over large temperature and precipitation gradients only in specific soil horizons, highlighting the depth dependence of the climatic controls on microbiome composition. Our finding that the direct impacts of climate are muted at depth suggests that deep soil microbiomes may lag in their acclimation to new temperatures with a changing climate.

scholarly journals Comparison of Drivers of Soil Microbial Communities Developed in Karst Ecosystems with Shallow and Deep Soil Depths

Agronomy ◽  
2021 ◽  
Vol 11 (1) ◽  
pp. 173
Author(s):  
Huiling Guan ◽  
Jiangwen Fan ◽  
Haiyan Zhang ◽  
Warwick Harris
Keyword(s):  
Microbial Community ◽  
Microbial Communities ◽  
Soil Depth ◽  
Phospholipid Fatty Acid ◽  
Soil Microbial Communities ◽  
Deep Soil ◽  
Soil System ◽  
Soil Microbial ◽  
Total Soil ◽  
Karst Ecosystems

Soil erosion is prevalent in karst areas, but few studies have compared the differences in the drivers for soil microbial communities among karst ecosystems with different soil depths, and most studies have focused on the local scale. To fill this research gap, we investigated the upper 20 cm soil layers of 10 shallow–soil depth (shallow–SDC, total soil depth less than 100 cm) and 11 deep–soil depth communities (deep–SDC, total soil depth more than 100 cm), covering a broad range of vegetation types, soils, and climates. The microbial community characteristics of both the shallow–SDC and deep–SDC soils were tested by phospholipid fatty acid (PLFAs) analysis, and the key drivers of the microbial communities were illustrated by forward selection and variance partitioning analysis. Our findings demonstrated that more abundant soil nutrients supported higher fungal PLFA in shallow–SDC than in deep–SDC (p < 0.05). Furthermore, stronger correlation between the microbial community and the plant–soil system was found in shallow–SDC: the pure plant effect explained the 43.2% of variance in microbial biomass and 57.8% of the variance in the ratio of Gram–positive bacteria to Gram–negative bacteria (G+/G−), and the ratio of fungi to total bacteria (F/B); the pure soil effect accounted for 68.6% variance in the microbial diversity. The ratio of microbial PLFA cyclopropyl to precursors (Cy/Pr) and the ratio of saturated PLFA to monounsaturated PLFA (S/M) as indicators of microbial stress were controlled by pH, but high pH was not conducive to microorganisms in this area. Meanwhile, Cy/Pr in all communities was >0.1, indicating that microorganisms were under environmental stress. Therefore, the further ecological restoration of degraded karst communities is needed to improve their microbial communities.

scholarly journals Reviews and syntheses: Soil resources and climate jointly drive variations in microbial biomass carbon and nitrogen in China's forest ecosystems

2015 ◽  
Vol 12 (22) ◽  
pp. 6751-6760 ◽  
Author(s):  
Z. H. Zhou ◽  
C. K. Wang
Keyword(s):  
Microbial Biomass ◽  
Forest Ecosystems ◽  
Microbial Biomass Carbon ◽  
Mean Annual Temperature ◽  
Biomass Carbon ◽  
Large Variability ◽  
Soil Resources ◽  
Carbon And Nitrogen ◽  
Soil Microbial ◽  
Microbial Quotient

Abstract. Microbial metabolism plays a key role in regulating the biogeochemical cycle of forest ecosystems, but the mechanisms driving microbial growth are not well understood. Here, we synthesized 689 measurements on soil microbial biomass carbon (Cmic) and nitrogen (Nmic) and related parameters from 207 independent studies published up to November 2014 across China's forest ecosystems. Our objectives were to (1) examine patterns in Cmic, Nmic, and microbial quotient (i.e., Cmic / Csoil and Nmic / Nsoil rates) by climate zones and management regimes for these forests; and (2) identify the factors driving the variability in the Cmic, Nmic, and microbial quotient. There was a large variability in Cmic (390.2 mg kg−1), Nmic (60.1 mg kg−1, Cmic : Nmic ratio (8.25), Cmic / Csoil rate (1.92 %), and Nmic / Nsoil rate (3.43 %) across China's forests. The natural forests had significantly greater Cmic (514.1 mg kg−1 vs. 281.8 mg kg−1) and Nmic (82.6 mg kg−1 vs. 39.0 mg kg−1) than the planted forests, but had less Cmic : Nmic ratio (7.3 vs. 9.2) and Cmic / Csoil rate (1.7 % vs. 2.1 %). Soil resources and climate together explained 24.4–40.7 % of these variations. The Cmic : Nmic ratio declined slightly with Csoil : Nsoil ratio, and changed with latitude, mean annual temperature and precipitation, suggesting a plasticity of microbial carbon-nitrogen stoichiometry. The Cmic / Csoil rate decreased with Csoil : Nsoil ratio, whereas the Nmic / Nsoil rate increased with Csoil : Nsoil ratio; the former was influenced more by soil resources than by climate, whereas the latter was influenced more by climate. These results suggest that soil microbial assimilation of carbon and nitrogen are jointly driven by soil resources and climate, but may be regulated by different mechanisms.

scholarly journals Screening of active antimicrobial and biological enzymes of microbial isolated from soil in Thailand

2017 ◽  
Vol 10 (4) ◽  
pp. 73 ◽  
Author(s):  
Pannapa Powthong ◽  
Apichai Sripean ◽  
Pattra Suntornthiticharoen
Keyword(s):  
Pathogenic Bacteria ◽  
Soil Microorganisms ◽  
Extracellular Enzyme ◽  
Antimicrobial Activities ◽  
Lipase Production ◽  
Resistant Bacteria ◽  
Strong Activity ◽  
Preliminary Screening ◽  
Soil Microbial ◽  
Drug Resistant Bacteria

Objective: The objectives of this study were to isolate microorganisms and screen for potential antimicrobial activities from the soil. Methods: In this study, a total of 425 isolates were isolated from 100 soil samples. The preliminary screening for antimicrobial activities of these isolates was performed by modified cross-streak, agar diffusion, and modified icrodilution technique against 16 pathogenic bacteria and fungi.Results: In the anti-microbial activity, there were three isolates, namely, 277, 303, and 307 exhibited inhibitory activity against methicillin-resistantStaphylococcus aureus and Salmonella typhimurium respectively. This study also examined the various enzymes producing from soil microorganisms including chitinase, chitosanase, amylase, cellulose, caseinase, gelatinase, esterase, and lipase production of different selective media for 24 and 48hrs using the direct spot method. The results revealed that 28 isolates could produce various enzymes with strong activity. Most of them produced gelatinase (5.65%) and caseinase (5.18%). There were four isolates that produce broad-spectrum enzyme. In addition, the investigation of selectedmicroorganism identification showed that they can be divided into three groups: Burkholderia spp., Pseudomonas spp., and Rhodococcus spp.Conclusion: This study demonstrated that the microorganisms from soil are capable of producing potential, antibacterial, and bioactive enzymes.Keywords: Antimicrobial activity, Extracellular enzyme, Soil microbial, Drug-resistant bacteria.

SOIL MICROBIAL BIOMASS AND ENZYME ACTIVITIES RESPONSE TO COPPER AND MOLYBDENUM POLLUTION IN THE VICINITY OF ZANGEZUR COPPER AND MOLYBDENUM COMBINE, ARMENIA

2020 ◽  
Vol 54 (3 (253)) ◽  
pp. 235-245
Author(s):  
K.A. Ghazaryan ◽  
H.S. Movsesyan
Keyword(s):  
Microbial Biomass ◽  
Enzymatic Activity ◽  
Enzyme Activities ◽  
Soil Microbial Biomass ◽  
Negative Impact ◽  
Chemical Elements ◽  
Extracellular Enzyme ◽  
Soil Biological Activity ◽  
Soil Enzymatic Activity ◽  
Soil Microbial

The aim of this study was to define a relationship between heavy metal (Cu, Mo) pollution of soil and various extracellular enzyme activities. Six enzymatic activities involved in cycles of carbon, nitrogen, phosphorus and sulfur (β-glucosidase, chitinase, leucine-aminopeptidase, acid phosphomonoesterase, alkaline phosphomonoesterase, and arylsulphatase) as well as microbial biomass were determined in soil samples collected in the surroundings of Zangezur Copper and Molybdenum Combine. The investigations showed that pollution of soil with copper and molybdenum led to a decrease in microbial biomass and soil enzymatic activity, which in turn had a negative impact on cycles of chemical elements, in particular C, P, N and S. This gives reason to conclude that the changes in soil microbial biomass and enzymatic activity may act as indicators of soil biological activity and quality.

Intestinal Microbiome Composition Changes after Heart Transplant

2020 ◽  
Vol 39 (4) ◽  
pp. S457
Author(s):  
J.A. Spinner ◽  
X. Chen ◽  
S.W. Denfield ◽  
W.J. Dreyer ◽  
S. Devaraj
Keyword(s):  
Heart Transplant ◽  
Intestinal Microbiome ◽  
Microbiome Composition ◽  
Composition Changes

scholarly journals Rethinking Invasion Impacts across Multiple Field Sites Using European Swallowwort (Vincetoxicum rossicum) as a Model Invader

2018 ◽  
Vol 11 (3) ◽  
pp. 109-116 ◽  
Author(s):  
Grant L. Thompson ◽  
Terrence H. Bell ◽  
Jenny Kao-Kniffin
Keyword(s):  
Enzyme Activities ◽  
New York State ◽  
Extracellular Enzyme ◽  
Growth Patterns ◽  
Soil Microbiome ◽  
Microbial Composition ◽  
Similar Time ◽  
Microbiome Composition ◽  
Extracellular Enzyme Activities ◽  
Vincetoxicum Rossicum

AbstractEuropean swallowwort [Vincetoxicum rossicum (Kleopow) Barbarich] is found in the northeastern United States and southeastern Canada. It forms dense growth patterns that reduce plant and insect biodiversity, and lab assays show that it produces allelopathic compounds that affect microbial activity. Consequently, we hypothesized that V. rossicum alters soil microbiome composition and activity in invaded habitats, which may impact ecosystem properties and processes. We sampled soil from a similar time point within a growing season at each of five sites in New York State where V. rossicum was both present and absent. We measured bacterial and fungal microbiome composition, available soil nitrogen (N), soil respiration (CO2 flux), and soil extracellular enzyme activities. Microbial composition varied across field sites, but only fungal composition was affected by invasion. No significant differences were found between the invaded and uninvaded plots at any of the sites for available soil ammonium, nitrate, or respiration, though extractable N varied greatly between sites. Microbial hydrolytic extracellular enzyme activities suggest decreased protein degradation and increased oxidative enzyme activity with V. rossicum invasion, which is relevant to soil N and carbon cycling processes. Although V. rossicum impacted rhizosphere microbial composition and activity, it was not associated with large perturbations in ecosystem function when examined across multiple invasion sites during this short-term study.

scholarly journals Investigation of tylosin in feed of feedlot cattle and effects on liver abscess prevalence, and fecal and soil microbiomes and resistomes1

2019 ◽  
Vol 97 (11) ◽  
pp. 4567-4578 ◽  
Author(s):  
Margaret D Weinroth ◽  
Jennifer N Martin ◽  
Enrique Doster ◽  
Ifigenia Geornaras ◽  
Jennifer K Parker ◽  
...  
Keyword(s):  
Liver Abscess ◽  
Soil Microbial Communities ◽  
Amplicon Sequencing ◽  
Feedlot Cattle ◽  
Microbiome Composition ◽  
Soil Microbial ◽  
16S Rrna Amplicon Sequencing ◽  
Liver Abscesses ◽  
Geographical Regions ◽  
Antimicrobial Resistance Genes

Abstract Liver abscesses in feedlot cattle are detrimental to animal performance and economic return. Tylosin, a macrolide antibiotic, is used to reduce prevalence of liver abscesses, though there is variable efficacy among different groups of cattle. There is an increased importance in better understanding the etiology and pathogenesis of this condition because of growing concern over antibiotic resistance and increased scrutiny regarding use of antibiotics in food animal production. The objective of this study was to compare the microbiomes and antimicrobial resistance genes (resistomes) of feces of feedlot cattle administered or not administered tylosin and in their pen soil in 3 geographical regions with differing liver abscess prevalences. Cattle (total of 2,256) from 3 geographical regions were selected for inclusion based on dietary supplementation with tylosin (yes/no). Feces and pen soil samples were collected before harvest, and liver abscesses were identified at harvest. Shotgun and 16S rRNA amplicon sequencing were used to evaluate the soil and feces. Microbiome and resistome composition of feces (as compared by UniFrac distances and Euclidian distances, respectively) did not differ (P > 0.05) among tylosin or no tylosin-administered cattle. However, feedlot location was associated with differences (P ≤ 0.05) of resistomes and microbiomes. Using LASSO, a statistical model identified both fecal and soil microbial communities as predictive of liver abscess prevalence in pens. This model explained 75% of the variation in liver abscess prevalence, though a larger sample size would be needed to increase robustness of the model. These data suggest that tylosin exposure does not have a large impact on cattle resistomes or microbiomes, but instead, location of cattle production may be a stronger driver of both the resistome and microbiome composition of feces.

Pollen and Radiolarian Records from Deep-Sea Core RC14-103: Climatic Reconstructions of Northeast Japan and Northwest Pacific for the Last 90,000 Years

1985 ◽  
Vol 24 (1) ◽  
pp. 60-72 ◽  
Author(s):  
Linda E. Heusser ◽  
Joseph J. Morley
Keyword(s):  
Deciduous Forest ◽  
Northwest Pacific ◽  
Mean Annual Temperature ◽  
Modern Pollen ◽  
Temperature And Precipitation ◽  
Glacial Environments ◽  
Summer Temperatures ◽  
Broadleaf Deciduous Forest ◽  
Northeast Asian ◽  
High Degree

Using modern pollen and radiolarian distributions in sediments from the northwest Pacific and seas adjacent to Japan to interpret floral and faunal changes in core RC14-103 (44°02′N, 152°56′E), we recognize two major responses of the biota of eastern Hokkaido and the northwest Pacific to climatic changes since the last interglaciation. Relatively stable glacial environments (∼80,000–20,000 yr B.P.) were basically cold and wet (<4°C and ∼1000 mm mean annual temperature and precipitation, respectively) with boreal conijers and tundra/park-tundra on Hokkaido, and cool (<16°C) summer and cold (<1.0°C) winter surface temperatures offshore. Contrasting nonglacial environments (∼10,000–4000 yr B.P.) were warm and humid (>8°C and >1200 mm mean annual temperature and precipitation, respectively), supporting climax broadleaf deciduous forest with Quercus and Ulmus/Zelkova, with surface waters in the northwest Pacific characterized by warm (>1.5°C) winter and cold (10.4°–14.3°C) summer temperatures. Climatic evidence from RC14-103 shows a high degree of local and regional variation within the context of global climatic change. Correlative ocean and land records provide the detailed input necessary to assess local/regional responses to variations in other key elements (i.e., solar radiation, monsoonal variations) of the northeast Asian climate system.

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