Neuroimaging and modeling

2014 ◽  
Vol 11 (04) ◽  
pp. 245-253
Author(s):  
S. B. Eickhoff ◽  
D. Bzdok
Keyword(s):  
Psychiatric Disorders ◽  
Large Scale ◽  
Effective Connectivity ◽  
Network Models ◽  
Likelihood Estimation ◽  
Brain Regions ◽  
Causal Modeling ◽  
Functional Coupling ◽  
Response Patterns ◽  
Functional Relationships

SummaryThe links between symptomatic phenomenology of psychiatric disorders and their neurobiological pathophysiology are still understood only in fragments. While functional and structural neuroimaging methods have leveraged our knowledge of regional dysfunction in psychiatric disorders, emerging novel approaches more focused on brain networks or neural patterns promise additional forward progress. Activation likelihood estimation (ALE) performs quantitative large-scale aggregation of neuroimaging findings. Resting-state (RS) correlation captures networks of functional relationships between regions in the idling, non-goal-focused brain. In contrast, meta-analytic connectivity modeling (MACM) captures functional coupling between brain regions in the context of experimental paradigms. These methods may furthermore be exploited to provide data-driven parcellations (CBP, connectivity-based parcellation) of larger brain regions into distinct functional modules. Dynamic causal modeling (DCM), in turn, allows for the automatic selection among a set of connectional network models to delineate effective connectivity dynamics during experimental paradigms. Finally, machine learning (ML) allows for the automatic detection and prediction of diagnosis/treatment-response patterns in massive datasets. Capitalizing on this toolbox of computational modeling methods might considerably further psychiatry and thus benefit patients with mental disorders.

scholarly journals Analysis of the Human Connectome Data Supports the Notion of A “Common Model of Cognition” for Human and Human-Like Intelligence Across Domains

2019 ◽  
Author(s):  
Andrea Stocco ◽  
Catherine Sibert ◽  
Zoe Steine-Hanson ◽  
Natalie Koh ◽  
John E. Laird ◽  
...  
Keyword(s):  
Human Brain ◽  
Large Scale ◽  
Effective Connectivity ◽  
Brain Regions ◽  
Causal Modeling ◽  
Human Cognition ◽  
Functional Architecture ◽  
Hub And Spoke ◽  
Cognitive Domains ◽  
Fmri Analysis

AbstractThe Common Model of Cognition (CMC) is a recently proposed, consensus architecture intended to capture decades of progress in cognitive science on modeling human and human-like intelligence. Because of the broad agreement around it and preliminary mappings of its components to specific brain areas, we hypothesized that the CMC could be a candidate model of the large-scale functional architecture of the human brain. To test this hypothesis, we analyzed functional MRI data from 200 participants and seven different tasks that cover a broad range of cognitive domains. The CMC components were identified with functionally homologous brain regions through canonical fMRI analysis, and their communication pathways were translated into predicted patterns of effective connectivity between regions. The resulting dynamic linear model was implemented and fitted using Dynamic Causal Modeling, and compared against six alternative brain architectures that had been previously proposed in the field of neuroscience (three hierarchical architectures and three hub-and-spoke architectures) using a Bayesian approach. The results show that, in all cases, the CMC vastly outperforms all other architectures, both within each domain and across all tasks. The results suggest that a common, general architecture underpins human cognition across multiple cognitive domains, from the overall functional architecture of the human brain to higher-level thought processes.

scholarly journals On the structural connectivity of large-scale models of brain networks at cellular level

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Giuseppe Giacopelli ◽  
Domenico Tegolo ◽  
Emiliano Spera ◽  
Michele Migliore
Keyword(s):  
Large Scale ◽  
Brain Networks ◽  
Structural Connectivity ◽  
Network Models ◽  
Brain Regions ◽  
Cellular Level ◽  
Scale Model ◽  
Mathematical Framework ◽  
Underlying Mechanisms ◽  
Experimental Findings

AbstractThe brain’s structural connectivity plays a fundamental role in determining how neuron networks generate, process, and transfer information within and between brain regions. The underlying mechanisms are extremely difficult to study experimentally and, in many cases, large-scale model networks are of great help. However, the implementation of these models relies on experimental findings that are often sparse and limited. Their predicting power ultimately depends on how closely a model’s connectivity represents the real system. Here we argue that the data-driven probabilistic rules, widely used to build neuronal network models, may not be appropriate to represent the dynamics of the corresponding biological system. To solve this problem, we propose to use a new mathematical framework able to use sparse and limited experimental data to quantitatively reproduce the structural connectivity of biological brain networks at cellular level.

scholarly journals Altered Prefrontal–Basal Ganglia Effective Connectivity in Patients With Poststroke Cognitive Impairment

2020 ◽  
Vol 11 ◽  
Author(s):  
Jing Zhang ◽  
Zixiao Li ◽  
Xingxing Cao ◽  
Lijun Zuo ◽  
Wei Wen ◽  
...  
Keyword(s):  
Cognitive Impairment ◽  
Basal Ganglia ◽  
Cognitive Decline ◽  
Effective Connectivity ◽  
Network Connectivity ◽  
Brain Regions ◽  
Neuronal Model ◽  
Causal Modeling ◽  
Healthy Controls

We investigated the association between poststroke cognitive impairment and a specific effective network connectivity in the prefrontal–basal ganglia circuit. The resting-state effective connectivity of this circuit was modeled by employing spectral dynamic causal modeling in 11 poststroke patients with cognitive impairment (PSCI), 8 poststroke patients without cognitive impairment (non-PSCI) at baseline and 3-month follow-up, and 28 healthy controls. Our results showed that different neuronal models of effective connectivity in the prefrontal–basal ganglia circuit were observed among healthy controls, non-PSCI, and PSCI patients. Additional connected paths (extra paths) appeared in the neuronal models of stroke patients compared with healthy controls. Moreover, changes were detected in the extra paths of non-PSCI between baseline and 3-month follow-up poststroke, indicating reorganization in the ipsilesional hemisphere and suggesting potential compensatory changes in the contralesional hemisphere. Furthermore, the connectivity strengths of the extra paths from the contralesional ventral anterior nucleus of thalamus to caudate correlated significantly with cognitive scores in non-PSCI and PSCI patients. These suggest that the neuronal model of effective connectivity of the prefrontal–basal ganglia circuit may be sensitive to stroke-induced cognitive decline, and it could be a biomarker for poststroke cognitive impairment 3 months poststroke. Importantly, contralesional brain regions may play an important role in functional compensation of cognitive decline.

scholarly journals The neurophysiological architecture of semantic dementia: spectral dynamic causal modelling of a neurodegenerative proteinopathy

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Elia Benhamou ◽  
Charles R. Marshall ◽  
Lucy L. Russell ◽  
Chris J. D. Hardy ◽  
Rebecca L. Bond ◽  
...  
Keyword(s):  
Network Architecture ◽  
Large Scale ◽  
Effective Connectivity ◽  
Brain Regions ◽  
Semantic Dementia ◽  
Older Individuals ◽  
World Knowledge ◽  
Causal Modelling ◽  
Dynamic Causal Modelling ◽  
Semantic Impairment

Abstract The selective destruction of large-scale brain networks by pathogenic protein spread is a ubiquitous theme in neurodegenerative disease. Characterising the circuit architecture of these diseases could illuminate both their pathophysiology and the computational architecture of the cognitive processes they target. However, this is challenging using standard neuroimaging techniques. Here we addressed this issue using a novel technique—spectral dynamic causal modelling—that estimates the effective connectivity between brain regions from resting-state fMRI data. We studied patients with semantic dementia—the paradigmatic disorder of the brain system mediating world knowledge—relative to healthy older individuals. We assessed how the effective connectivity of the semantic appraisal network targeted by this disease was modulated by pathogenic protein deposition and by two key phenotypic factors, semantic impairment and behavioural disinhibition. The presence of pathogenic protein in SD weakened the normal inhibitory self-coupling of network hubs in both antero-mesial temporal lobes, with development of an abnormal excitatory fronto-temporal projection in the left cerebral hemisphere. Semantic impairment and social disinhibition were linked to a similar but more extensive profile of abnormally attenuated inhibitory self-coupling within temporal lobe regions and excitatory projections between temporal and inferior frontal regions. Our findings demonstrate that population-level dynamic causal modelling can disclose a core pathophysiological feature of proteinopathic network architecture—attenuation of inhibitory connectivity—and the key elements of distributed neuronal processing that underwrite semantic memory.

scholarly journals Large-scale DCMs for resting-state fMRI

2017 ◽  
Vol 1 (3) ◽  
pp. 222-241 ◽  
Author(s):  
Adeel Razi ◽  
Mohamed L. Seghier ◽  
Yuan Zhou ◽  
Peter McColgan ◽  
Peter Zeidman ◽  
...  
Keyword(s):  
Functional Connectivity ◽  
Resting State ◽  
Large Scale ◽  
Effective Connectivity ◽  
Directed Graphs ◽  
Resting State Fmri ◽  
Causal Modeling ◽  
Large Graphs ◽  
Model Inversion ◽  
Graph Theoretic

This paper considers the identification of large directed graphs for resting-state brain networks based on biophysical models of distributed neuronal activity, that is, effective connectivity. This identification can be contrasted with functional connectivity methods based on symmetric correlations that are ubiquitous in resting-state functional MRI (fMRI). We use spectral dynamic causal modeling (DCM) to invert large graphs comprising dozens of nodes or regions. The ensuing graphs are directed and weighted, hence providing a neurobiologically plausible characterization of connectivity in terms of excitatory and inhibitory coupling. Furthermore, we show that the use of Bayesian model reduction to discover the most likely sparse graph (or model) from a parent (e.g., fully connected) graph eschews the arbitrary thresholding often applied to large symmetric (functional connectivity) graphs. Using empirical fMRI data, we show that spectral DCM furnishes connectivity estimates on large graphs that correlate strongly with the estimates provided by stochastic DCM. Furthermore, we increase the efficiency of model inversion using functional connectivity modes to place prior constraints on effective connectivity. In other words, we use a small number of modes to finesse the potentially redundant parameterization of large DCMs. We show that spectral DCM—with functional connectivity priors—is ideally suited for directed graph theoretic analyses of resting-state fMRI. We envision that directed graphs will prove useful in understanding the psychopathology and pathophysiology of neurodegenerative and neurodevelopmental disorders. We will demonstrate the utility of large directed graphs in clinical populations in subsequent reports, using the procedures described in this paper.

scholarly journals Dynamic connectivity analyses of intracranial EEG during recognition memory reveal various large-scale functional networks

2020 ◽  
Author(s):  
Jakub Kopal ◽  
Jaroslav Hlinka ◽  
Elodie Despouy ◽  
Luc Valton ◽  
Marie Denuelle ◽  
...  
Keyword(s):  
Recognition Memory ◽  
Large Scale ◽  
Visual Recognition ◽  
Effective Connectivity ◽  
Memory Task ◽  
Brain Regions ◽  
Neural Basis ◽  
Intracranial Eeg ◽  
Large Scale Networks ◽  
The Right

Recognition memory is the ability to recognize previously encountered events, objects, or people. It is characterized by its robustness and rapidness. Even this relatively simple ability requires the coordinated activity of a surprisingly large number of brain regions. These spatially distributed, but functionally linked regions are interconnected into large-scale networks. Understanding memory requires an examination of the involvement of these networks and the interactions between different regions while memory processes unfold. However, little is known about the dynamical organization of large-scale networks during the early phases of recognition memory. We recorded intracranial EEG, which affords high temporal and spatial resolution, while epileptic subjects performed a visual recognition memory task. We analyzed dynamic functional and effective connectivity as well as network properties. Various networks were identified, each with its specific characteristics regarding information flow (feedforward or feedback), dynamics, topology, and stability. The first network mainly involved the right visual ventral stream and bilateral frontal regions. It was characterized by early predominant feedforward activity, modular topology, and high stability. It was followed by the involvement of a second network, mainly in the left hemisphere, but notably also involving the right hippocampus, characterized by later feedback activity, integrated topology, and lower stability. The transition between networks was associated with a change in network topology. Overall, these results confirm that several large-scale brain networks, each with specific properties and temporal manifestation, are involved during recognition memory. Ultimately, understanding how the brain dynamically faces rapid changes in cognitive demand is vital to our comprehension of the neural basis of cognition.

scholarly journals A data-driven approach to the automated mapping of functional brain topographies across species

2018 ◽  
Author(s):  
Wolfgang M. Pauli
Keyword(s):  
Animal Models ◽  
Psychiatric Disorders ◽  
Large Scale ◽  
Brain Regions ◽  
Behavioral Neuroscience ◽  
Open Questions ◽  
Dorsolateral Prefrontal ◽  
Neuroimaging Data ◽  
Data Driven Approach ◽  
Species Mapping

AbstractBehavioral neuroscience has made great strides in developing animal models of human behavior and psychiatric disorders. Animal models allow for the formulation of hypotheses regarding the mechanisms underlying psychiatric disorders, and the opportunity to test these hypotheses using procedures that are too invasive for human participants. However, recent scientific reviews have highlighted the low success rate of translating results from animal models into clinical interventions in humans. A potential roadblock is that bidirectional functional mappings between the human and rodent brain are incomplete. To narrow this gap, we created a framework, Neurobabel, for performing large-scale automated synthesis of human neuroimaging data and behavioral neuroscience data. By leveraging the semantics of how researchers within each field describe their studies, this framework enables region to region mapping of brain regions across species, as well as cross-species mapping of psychological functions. As a proof of concept, we utilize the framework to create a functional cross-species mapping between the amygdala and hippocampus for fear-related and spatial memories, respectively. We then proceed to address two open questions in the field: (1) Do rodents have a dorsolateral prefrontal cortex? (2) Which human brain region corresponds to the rodent prelimbic cortex?

scholarly journals Analysis of fMRI data using noise-diffusion network models: a new covariance-coding perspective

2017 ◽  
Author(s):  
Matthieu Gilson
Keyword(s):  
Resting State ◽  
Effective Connectivity ◽  
Network Models ◽  
Resting State Fmri ◽  
Brain Regions ◽  
Brain Network ◽  
Fmri Data ◽  
Second Order Statistics ◽  
Proposed Model ◽  
The Many

AbstractSince the middle of the 1990s, studies of resting-state fMRI/BOLD data have explored the correlation patterns of activity across the whole brain, which is referred to as functional connectivity (FC). Among the many methods that have been developed to interpret FC, a recently proposed model-based approach describes the propagation of fluctuating BOLD activity within the recurrently connected brain network by inferring the effective connectivity (EC). In this model, EC quantifies the strengths of directional interactions between brain regions, viewed from the proxy of BOLD activity. In addition, the tuning procedure for the model provides estimates for the local variability (input variances) to explain how the observed FC is generated. Generalizing, the network dynamics can be studied in the context of an input-output mapping - determined by EC - for the second-order statistics of fluctuating nodal activities. The present paper focuses on the following detection paradigm: observing output covariances, how discriminative is the (estimated) network model with respect to various input covariance patterns? An application with the model fitted to experimental fMRI data - movie viewing versus resting state - illustrates that changes in excitability and changes in brain coordination go hand in hand.

scholarly journals The Neural Basis of Motivational Influences on Cognitive Control

2017 ◽  
Author(s):  
Cameron Parro ◽  
Matthew L Dixon ◽  
Kalina Christoff
Keyword(s):  
Cognitive Control ◽  
Large Scale ◽  
Functional Neuroimaging ◽  
Meta Analysis ◽  
Premotor Cortex ◽  
Likelihood Estimation ◽  
Brain Regions ◽  
Control Mechanisms ◽  
Neural Basis ◽  
The Brain

AbstractCognitive control mechanisms support the deliberate regulation of thought and behavior based on current goals. Recent work suggests that motivational incentives improve cognitive control, and has begun to elucidate the brain regions that may support this effect. Here, we conducted a quantitative meta-analysis of neuroimaging studies of motivated cognitive control using activation likelihood estimation (ALE) and Neurosynth in order to delineate the brain regions that are consistently activated across studies. The analysis included functional neuroimaging studies that investigated changes in brain activation during cognitive control tasks when reward incentives were present versus absent. The ALE analysis revealed consistent recruitment in regions associated with the frontoparietal control network including the inferior frontal sulcus (IFS) and intraparietal sulcus (IPS), as well as consistent recruitment in regions associated with the salience network including the anterior insula and anterior mid-cingulate cortex (aMCC). A large-scale exploratory meta-analysis using Neurosynth replicated the ALE results, and also identified the caudate nucleus, nucleus accumbens, medial thalamus, inferior frontal junction/premotor cortex (IFJ/PMC), and hippocampus. Finally, we conducted separate ALE analyses to compare recruitment during cue and target periods, which tap into proactive engagement of rule-outcome associations, and the mobilization of appropriate viscero-motor states to execute a response, respectively. We found that largely distinct sets of brain regions are recruited during cue and target periods. Altogether, these findings suggest that flexible interactions between frontoparietal, salience, and dopaminergic midbrain-striatal networks may allow control demands to be precisely tailored based on expected value.

scholarly journals Using structural connectivity to augment community structure in EEG functional connectivity

2020 ◽  
Vol 4 (3) ◽  
pp. 761-787 ◽  
Author(s):  
Katharina Glomb ◽  
Emeline Mullier ◽  
Margherita Carboni ◽  
Maria Rubega ◽  
Giannarita Iannotti ◽  
...  
Keyword(s):  
Community Structure ◽  
White Matter ◽  
Functional Connectivity ◽  
Large Scale ◽  
Structural Connectivity ◽  
Brain Regions ◽  
Source Analysis ◽  
Volume Conduction ◽  
Functional Relationships ◽  
The Impact

Recently, EEG recording techniques and source analysis have improved, making it feasible to tap into fast network dynamics. Yet, analyzing whole-cortex EEG signals in source space is not standard, partly because EEG suffers from volume conduction: Functional connectivity (FC) reflecting genuine functional relationships is impossible to disentangle from spurious FC introduced by volume conduction. Here, we investigate the relationship between white matter structural connectivity (SC) and large-scale network structure encoded in EEG-FC. We start by confirming that FC (power envelope correlations) is predicted by SC beyond the impact of Euclidean distance, in line with the assumption that SC mediates genuine FC. We then use information from white matter structural connectivity in order to smooth the EEG signal in the space spanned by graphs derived from SC. Thereby, FC between nearby, structurally connected brain regions increases while FC between nonconnected regions remains unchanged, resulting in an increase in genuine, SC-mediated FC. We analyze the induced changes in FC, assessing the resemblance between EEG-FC and volume-conduction- free fMRI-FC, and find that smoothing increases resemblance in terms of overall correlation and community structure. This result suggests that our method boosts genuine FC, an outcome that is of interest for many EEG network neuroscience questions.

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