Tracing the evolution of bioluminescent light organs across the deep-sea shrimp family Sergestidae using a genomic skimming and phylogenetic approach

2022 ◽  
Author(s):  
Charles Golightly ◽  
Danielle M. DeLeo ◽  
Nicole Perez ◽  
Tin-Yam Chan ◽  
José M. Landeira ◽  
...  
Keyword(s):  
Deep Sea ◽  
Morphological Diversity ◽  
Molecular Data ◽  
Future Research ◽  
Ancestral State ◽  
Light Organ ◽  
Genus Level ◽  
Organ Type ◽  
A Genome ◽  
The Family

Deep-sea shrimp of the family Sergestidae Dana, 1852 provide a unique system for studying the evolution of bioluminescence. Most species within the family possess autogenic bioluminescent photophores in one of three distinct forms: lensed photophores; non-lensed photophores; or internal organs of Pesta. This morphological diversity across the Sergestidae has resulted in recent major taxonomic revisions, dividing the two major genera (Sergia Stimpson, 1860 and Sergestes Milne Edwards, 1830) into 15. The present study capitalises on molecular data to construct an updated genus-level phylogeny of sergestid shrimp. DNA was successfully extracted from ~87 individuals belonging to 13 of the 15 newly proposed genera. A ‘genome skimming’ approach was implemented, allowing the capture of mitochondrial genomic data across 19 sergestid species. Additional individuals have been incorporated into the phylogeny through Sanger sequencing of both nuclear (H3 and NAK) and mitochondrial (16S and COI) genes. The resulting molecular phylogeny is compared with previous morphological trees with specific attention to genus-level relationships. The -sergestes group was rendered non-monophyletic and the -sergia group was recovered as monophyletic. Ancestral state reconstructions of light organ type indicate that organs of Pesta is the ancestral state for the family. Non-lensed photophores evolved once across the -sergia group, but were later lost in the deepest living genus, Sergia. Lensed photophores also evolved once within the genera Prehensilosergia Vereshchaka, Olesen & Lunina, 2014, Lucensosergia Vereshchaka, Olesen & Lunina, 2014 and Challengerosergia Vereshchaka, Olesen & Lunina, 2014. These findings identify preliminary patterns across light organ type and species’ depth distributions; however, future research that incorporates finer-scale depth data and more species is needed to confirm our findings.

scholarly journals Multiple origins of deep-sea Asellota (Crustacea: Isopoda) from shallow waters revealed by molecular data

2008 ◽  
Vol 276 (1658) ◽  
pp. 799-808 ◽  
Author(s):  
Michael J Raupach ◽  
Christoph Mayer ◽  
Marina Malyutina ◽  
Johann-Wolfgang Wägele
Keyword(s):  
Shallow Water ◽  
Deep Sea ◽  
Morphological Characters ◽  
Molecular Data ◽  
Multiple Origins ◽  
Morphological Adaptations ◽  
The Family ◽  
Shallow Water Species ◽  
Water Species ◽  
Variable Group

The Asellota are a highly variable group of Isopoda with many species in freshwater and marine shallow-water environments. However, in the deep sea, they show their most impressive radiation with a broad range of astonishing morphological adaptations and bizarre body forms. Nevertheless, the evolution and phylogeny of the deep-sea Asellota are poorly known because of difficulties in scoring morphological characters. In this study, the molecular phylogeny of the Asellota is evaluated for 15 marine shallow-water species and 101 deep-sea species, using complete 18S and partial 28S rDNA gene sequences. Our molecular data support the monophyly of most deep-sea families and give evidence for a multiple colonization of the deep sea by at least four major lineages of asellote isopods. According to our molecular data, one of these lineages indicates an impressive radiation in the deep sea. Furthermore, the present study rejects the monophyly of the family Janiridae, a group of plesiomorphic shallow-water Asellota, and several shallow-water and deep-sea genera ( Acanthaspidia , Ianthopsis , Haploniscus , Echinozone , Eurycope , Munnopsurus and Syneurycope ).

scholarly journals Some thecate hydroids (Cnidaria: Hydrozoa) from off New Caledonia collected during KANACONO and KANADEEP expeditions of the French Tropical Deep-Sea Benthos Program

2019 ◽  
Author(s):  
Horia R. Galea ◽  
Peter Schuchert
Keyword(s):  
Deep Water ◽  
Deep Sea ◽  
New Genus ◽  
New Records ◽  
New Caledonia ◽  
Molecular Data ◽  
Systematic Position ◽  
Male And Female ◽  
The Family ◽  
First Time

Thirty-six species of various thecate hydroids occur in two recent, deep-water collections from off New Caledonia. Of these, nine are new, namely Solenoscyphus subtilis Galea, sp. nov., Hincksella immersa Galea, sp. nov., Synthecium rectangulatum Galea, sp. nov., Diphasia alternata Galea, sp. nov., Dynamena opposita Galea, sp. nov., Hydrallmania clavaformis Galea, sp. nov., Symplectoscyphus acutustriatus Galea, sp. nov., Symplectoscyphus elongatulus Galea, sp. nov. and Zygophylax niger Galea, sp. nov. The male and female gonothecae of Caledoniana decussata Galea, 2015, the female gonothecae of Caledoniana microgona Galea, 2015, as well as the gonothecae of both sexes of Solenoscyphus striatus Galea, 2015 are described for the first time. The systematic position of the genera Solenoscyphus Galea, 2015 and Caledoniana Galea, 2015 is discussed on both morphological and molecular grounds, and both are confidently placed within the family Staurothecidae Maronna et al., 2016. In light of the molecular data, the genera Billardia Totton, 1930 and Dictyocladium Allman, 1888 are assigned to the families Syntheciidae Marktanner-Turneretscher, 1890 and Symplectoscyphidae Maronna et al. , 2016, respectively. The previously undescribed gonothecae of Hincksella neocaledonica Galea, 2015, and the male gonothecae of Sertularella tronconica Galea, 2016, were found. Thyroscyphus scorpioides Vervoort, 1993, a peculiar hydroid with putative stem nematothecae, is redescribed and assigned to the new genus Tuberocaulus Galea, gen. nov. Noteworthy new records from the study area are: Tasmanaria edentula (Bale, 1924), Hincksella sibogae Billard, 1918, Dictyocladium reticulatum (Kirchenpauer, 1884), Salacia sinuosa (Bale, 1888) and Billardia hyalina Vervoort & Watson, 2003. Most species are illustrated to facilitate their identification, and the morphology of the new ones is compared to that of their related congeners.

scholarly journals Taxonomy "under construction": advances in the systematics of Apocynaceae, with emphasis on the Brazilian Asclepiadoideae

Rodriguésia ◽  
2012 ◽  
Vol 63 (1) ◽  
pp. 075-088 ◽  
Author(s):  
Alessandro Rapini
Keyword(s):  
Native Species ◽  
Morphological Evolution ◽  
Molecular Data ◽  
Phylogenetic Position ◽  
Future Research ◽  
The Family ◽  
Taxonomic Changes ◽  
Under Construction ◽  
Floristic Studies ◽  
The 19Th Century

The Apocynaceae comprise approximately 5,000 species and are widely distributed. The family belongs to the Gentianales and can be easily recognized by the presence of latex and a style-head derived from the fusion of two carpels at the apex of the styles. The largest subfamily in Apocynaceae is Asclepiadoideae. Treated as the Asclepiadaceae for almost two centuries, it comprises about 3,000 species and is defined by stamens with bisporangiate anthers and pollen transferred in specialized units called pollinaria. Since the 19th century, floristic studies and taxonomic monographs have significantly contributed to the taxonomy of Brazilian Asclepiadoideae. Nevertheless, advances in understanding the internal relationships in the subfamily were not done until this millennium, with the popularization of phylogenetic studies based on molecular data and powerful computer analyses. Advances in the systematics of Apocynaceae have provided new interpretations on the morphological evolution and biogeography of the family and have led to important changes in its classification. Nevertheless, several taxonomic rearrangements are still needed and it can be said that the taxonomy of Apocynaceae is "under construction". In this article, the major taxonomic changes in the family are reviewed, with special attention given to the systematics of Neotropical groups. A cladogram of the Apocynaceae is presented, which highlights the phylogenetic position of the Brazilian genera and their diversity in number of native species. The main studies and the diversity of Asclepiadoideae in Brazil are summarized and perspectives for future research on the subfamily are presented.

scholarly journals Morphological diversity of phytolith structures in six species of Carex L. and Cyperus L. (Cyperaceae Juss.) from West Bengal, India

2020 ◽  
Vol 21 (8) ◽  
Author(s):  
SUBRATA MAJUMDER ◽  
TANMOY MALLICK ◽  
Asok Ghosh
Keyword(s):  
West Bengal ◽  
Morphological Diversity ◽  
Taxonomic Identification ◽  
Distinctive Character ◽  
Cosmopolitan Distribution ◽  
Reproductive Morphology ◽  
Genus Level ◽  
Vegetative Structure ◽  
The Family ◽  
Shape Structure

Abstract. Majumder S, Mallick T, Ghosh A. 2020. Morphological diversity of phytolith structures in six species of Carex L. and Cyperus L. (Cyperaceae Juss.) from West Bengal, India. Biodiversitas 21: 3471-3486. Cyperaceae is a taxonomically challenging group due to its cosmopolitan distribution, similar vegetative structure, and reduced reproductive morphology. The present study focused on the characterization and description of phytolith morphotypes based on shape, structure, and ornamentation. Six species of Carex L. and Cyperus L. (three species each) were considered for the present study. From the investigation, we found 56 phytolith morphotypes, among which the principle ones were conical, elongate bulbous margin, lanceolate psilate, tabular concave with verrucate, tabular concave columellate, ovate granulate, and orbicular concave. The conical morphotype was most commonly found. The elongate bulbous margin, lanceolate psilate, and tabular concave with verrucate phytolith morphotypes were specific to the genus Carex, while the tabular concave columellate, ovate granulate and orbicular concave were only found in Cyperus spp. Further, the detailed study of conical morphotypes revealed a distinctive character among the studied genera. Our study concludes that conical, elongate bulbous margin, lanceolate psilate, tabular concave with verrucate, tabular concave columellate, ovate granulate, and orbicular concave morphotypes are constant at the genus level and may play a role in taxonomic identification in the family Cyperaceae.

scholarly journals A molecular phylogeny of forktail damselflies (genus Ischnura) reveals a dynamic macroevolutionary history of female colour polymorphisms

2020 ◽  
Author(s):  
Rachel Blow ◽  
Beatriz Willink ◽  
Erik I. Svensson
Keyword(s):  
Molecular Phylogeny ◽  
Sexual Conflict ◽  
Evolutionary Dynamics ◽  
Molecular Data ◽  
Future Research ◽  
Ancestral State ◽  
Multispecies Coalescent ◽  
Geographic Range Size ◽  
Extant Species ◽  
History Of

AbstractColour polymorphisms are popular study systems among biologists interested in evolutionary dynamics, genomics, sexual selection and sexual conflict. In many damselflies, such as in the globally distributed genus Ischnura (forktails), female colour polymorphisms occur in some species. Female-polymorphic species contain two or three female morphs, one of which is malecoloured (androchrome or male mimic) and co-exists with sexually dimorphic (heterochrome) females. These female colour polymorphisms are considered to be maintained by frequencydependent sexual conflict, but their macroevolutionary histories are unknown, due to the lack of a robust molecular phylogeny. Here, we present the first time-calibrated phylogeny of Ischnura, using a multispecies coalescent approach (StarBEAST2), incorporating both molecular data and fossil information of 41 extant species (55% of the genus). We estimate the age of Ischnura to be between 13.8 and 23.4 millions of years, i.e. Miocene. We infer the ancestral state of this genus as female monomorphism with heterochrome females, with multiple gains and losses of polymorphisms, evidence of trans-species polymorphisms and a significant positive relationship between polymorphism incidence and current geographic range size. Our study provides a robust phylogenetic framework for future research on the dynamic macroevolutionary history of this clade with its extraordinary diversity of sex-limited female polymorphisms.

Parenting, Religion, and Moral Development

2019 ◽  
pp. 178-196
Author(s):  
Sam A. Hardy ◽  
David C. Dollahite ◽  
Chayce R. Baldwin
Keyword(s):  
Moral Development ◽  
Parenting Styles ◽  
Family Relationships ◽  
Future Research ◽  
Adolescent Religiosity ◽  
Faith Traditions ◽  
The Family ◽  
Role Of Religion

The purpose of this chapter is to review research on the role of religion in moral development within the family. We first present a model of the processes involved. Parent or family religiosity is the most distal predictor and affects moral development through its influence on parenting as well as child or adolescent religiosity. Additionally, parenting affects moral development directly, but also through its influence on child or adolescent religiosity. In other words, parent or family religiosity dynamically interconnects with parenting styles and practices, and with family relationships, and these in turn influence moral development directly as well as through child or adolescent religiosity. We also discuss how these processes might vary across faith traditions and cultures, and point to directions for future research.

scholarly journals Towards a Natural Classification of Hyphodontia Sensu Lato and the Trait Evolution of Basidiocarps within Hymenochaetales (Basidiomycota)

2021 ◽  
Vol 7 (6) ◽  
pp. 478
Author(s):  
Xue-Wei Wang ◽  
Tom W. May ◽  
Shi-Liang Liu ◽  
Li-Wei Zhou
Keyword(s):  
Phylogenetic Analyses ◽  
Taxonomic Status ◽  
Ancestral State ◽  
Trait Evolution ◽  
Natural Classification ◽  
Multiple Loci ◽  
The Family ◽  
Phylogenetic Perspective ◽  
Taxonomic Framework ◽  
First Time

Hyphodontia sensu lato, belonging to Hymenochaetales, accommodates corticioid wood-inhabiting basidiomycetous fungi with resupinate basidiocarps and diverse hymenophoral characters. Species diversity of Hyphodontia sensu lato has been extensively explored worldwide, but in previous studies the six accepted genera in Hyphodontia sensu lato, viz. Fasciodontia, Hastodontia, Hyphodontia, Kneiffiella, Lyomyces and Xylodon were not all strongly supported from a phylogenetic perspective. Moreover, the relationships among these six genera in Hyphodontia sensu lato and other lineages within Hymenochaetales are not clear. In this study, we performed comprehensive phylogenetic analyses on the basis of multiple loci. For the first time, the independence of each of the six genera receives strong phylogenetic support. The six genera are separated in four clades within Hymenochaetales: Fasciodontia, Lyomyces and Xylodon are accepted as members of a previously known family Schizoporaceae, Kneiffiella and Hyphodontia are, respectively, placed in two monotypic families, viz. a previous name Chaetoporellaceae and a newly introduced name Hyphodontiaceae, and Hastodontia is considered to be a genus with an uncertain taxonomic position at the family rank within Hymenochaetales. The three families emerged between 61.51 and 195.87 million years ago. Compared to other families in the Hymenochaetales, these ages are more or less similar to those of Coltriciaceae, Hymenochaetaceae and Oxyporaceae, but much older than those of the two families Neoantrodiellaceae and Nigrofomitaceae. In regard to species, two, one, three and 10 species are newly described from Hyphodontia, Kneiffiella, Lyomyces and Xylodon, respectively. The taxonomic status of additional 30 species names from these four genera is briefly discussed; an epitype is designated for X. australis. The resupinate habit and poroid hymenophoral configuration were evaluated as the ancestral state of basidiocarps within Hymenochaetales. The resupinate habit mainly remains, while the hymenophoral configuration mainly evolves to the grandinioid-odontioid state and also back to the poroid state at the family level. Generally, a taxonomic framework for Hymenochaetales with an emphasis on members belonging to Hyphodontia sensu lato is constructed, and trait evolution of basidiocarps within Hymenochaetales is revealed accordingly.

Marital Satisfaction of Portuguese Families in Times of Social Lockdown

2021 ◽  
pp. 106648072110098
Author(s):  
Carla Sílvia Fernandes ◽  
Bruno Magalhães ◽  
Sílvia Silva ◽  
Beatriz Edra
Keyword(s):  
Marital Satisfaction ◽  
Exploratory Study ◽  
Social Economic ◽  
Future Research ◽  
Marital Relations ◽  
The Social ◽  
The Family ◽  
Convenience Sampling ◽  
Global Threat ◽  
The Impact

The COVID-19 pandemic represents a global threat and crisis situation, and its wide-reaching impact has also affected marital satisfaction. Dysfunction of the marital system puts the survival of the family unit at risk. This research aimed to determine the level of marital satisfaction of Portuguese families during the social lockdown and the association between the variables under study. A descriptive, exploratory study was conducted. During the social lockdown, 276 people of Portuguese nationality and residing in Portugal were recruited using nonprobabilistic convenience sampling. Marital satisfaction in the pandemic phase showed low values that may be associated with the social, economic, and political context experienced by the pandemic situation. Future research must be carried out in order to identify, prevent, and intervene in situations of violence. In addition, future research should explore not only marital satisfaction during the current pandemic but a more systemic assessment of marital relations during crises, expanding the impact of marital satisfaction in family functioning.

The status of Myriangiaceae (Dothideomycetes)

Phytotaxa ◽  
2014 ◽  
Vol 176 (1) ◽  
pp. 219 ◽  
Author(s):  
ASHA J. DISSANAYAKE ◽  
RUVISHIKA S. JAYAWARDENA ◽  
SARANYAPHAT BOONMEE ◽  
KASUN M. THAMBUGALA ◽  
QING TIAN ◽  
...  
Keyword(s):  
Sequence Data ◽  
Molecular Data ◽  
Molecular Sequence Data ◽  
Molecular Sequence ◽  
The Family ◽  
The Status ◽  
Sexual State ◽  
Morphological And Molecular Data ◽  
Asexual State ◽  
Molecular Characters

The family Myriangiaceae is relatively poorly known amongst the Dothideomycetes and includes genera which are saprobic, epiphytic and parasitic on the bark, leaves and branches of various plants. The family has not undergone any recent revision, however, molecular data has shown it to be a well-resolved family closely linked to Elsinoaceae in Myriangiales. Both morphological and molecular characters indicate that Elsinoaceae differs from Myriangiaceae. In Elsinoaceae, small numbers of asci form in locules in light coloured pseudostromata, which form typical scab-like blemishes on leaf or fruit surfaces. The coelomycetous, “Sphaceloma”-like asexual state of Elsinoaceae, form more frequently than the sexual state; conidiogenesis is phialidic and conidia are 1-celled and hyaline. In Myriangiaceae, locules with single asci are scattered in a superficial, coriaceous to sub-carbonaceous, black ascostromata and do not form scab-like blemishes. No asexual state is known. In this study, we revisit the family Myriangiaceae, and accept ten genera, providing descriptions and discussion on the generic types of Anhellia, Ascostratum, Butleria, Dictyocyclus, Diplotheca, Eurytheca, Hemimyriangium, Micularia, Myriangium and Zukaliopsis. The genera of Myriangiaceae are compared and contrasted. Myriangium duriaei is the type species of the family, while Diplotheca is similar and may possibly be congeneric. The placement of Anhellia in Myriangiaceae is supported by morphological and molecular data. Because of similarities with Myriangium, Ascostratum (A. insigne), Butleria (B. inaghatahani), Dictyocyclus (D. hydrangea), Eurytheca (E. trinitensis), Hemimyriangium (H. betulae), Micularia (M. merremiae) and Zukaliopsis (Z. amazonica) are placed in Myriangiaceae. Molecular sequence data from fresh collections is required to confirm the relationships and placement of the genera in this family.

scholarly journals Phylogenomic Discordance in the Eared Seals is best explained by Incomplete Lineage Sorting following Explosive Radiation in the Southern Hemisphere

2020 ◽  
Author(s):  
Fernando Lopes ◽  
Larissa R Oliveira ◽  
Amanda Kessler ◽  
Yago Beux ◽  
Enrique Crespo ◽  
...  
Keyword(s):  
Incomplete Lineage Sorting ◽  
Gene Tree ◽  
Molecular Data ◽  
Species Tree ◽  
Gene Trees ◽  
Lineage Sorting ◽  
Data Types ◽  
High Coverage ◽  
Sea Lions ◽  
The Family

Abstract The phylogeny and systematics of fur seals and sea lions (Otariidae) have long been studied with diverse data types, including an increasing amount of molecular data. However, only a few phylogenetic relationships have reached acceptance because of strong gene-tree species tree discordance. Divergence times estimates in the group also vary largely between studies. These uncertainties impeded the understanding of the biogeographical history of the group, such as when and how trans-equatorial dispersal and subsequent speciation events occurred. Here we used high-coverage genome-wide sequencing for 14 of the 15 species of Otariidae to elucidate the phylogeny of the family and its bearing on the taxonomy and biogeographical history. Despite extreme topological discordance among gene trees, we found a fully supported species tree that agrees with the few well-accepted relationships and establishes monophyly of the genus Arctocephalus. Our data support a relatively recent trans-hemispheric dispersal at the base of a southern clade, which rapidly diversified into six major lineages between 3 to 2.5 Ma. Otaria diverged first, followed by Phocarctos and then four major lineages within Arctocephalus. However, we found Zalophus to be non-monophyletic, with California (Z. californianus) and Steller sea lions (Eumetopias jubatus) grouping closer than the Galapagos sea lion (Z. wollebaeki) with evidence for introgression between the two genera. Overall, the high degree of genealogical discordance was best explained by incomplete lineage sorting resulting from quasi-simultaneous speciation within the southern clade with introgresssion playing a subordinate role in explaining the incongruence among and within prior phylogenetic studies of the family.

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