Comparative viromes of Culicoides and mosquitoes reveal their consistency and diversity in viral profiles

2020 ◽  
Author(s):  
Lin Liu ◽  
Qin Shen ◽  
Nan Li ◽  
Yuwen He ◽  
Na Han ◽  
...  
Keyword(s):  
Spatiotemporal Distribution ◽  
Viral Diversity ◽  
Emerging Viruses ◽  
Biting Midges ◽  
Viral Ecology ◽  
Pathogenic Viruses

Abstract The genus Culicoides includes biting midges, some of which are vectors for viruses that cause diseases in humans and animals. Knowledge of the roles of Culicoides in viral ecology is inadequate. We collected ~300 000 samples of Culicoides and mosquitoes in 15 representative regions within Yunnan, China. Using mosquitoes as reference vectors, we designed a comparative virome strategy to study the viral composition, diversity, hosts and spatiotemporal distribution of Culicoides. A map of viromes in Culicoides and mosquitoes in Yunan province, China, was constructed. At the same locations, Culicoides and mosquitoes usually share a similar viral diversity. At least 10 important pathogenic viruses were detected from Culicoides. Many novel viruses were discovered, including 21 segmented viruses of Flaviviridae, 180 viruses of Monjiviricetes and 130 viruses of Bunyavirales. The findings demonstrate that Culicoides is an important part of viral ecology and should be studied and monitored for potentially emerging viruses.

scholarly journals SARS-CoV-2 Cellular Infection and Therapeutic Opportunities: Lessons Learned from Ebola Virus

Membranes ◽  
2021 ◽  
Vol 11 (1) ◽  
pp. 64
Author(s):  
Jordana Muñoz-Basagoiti ◽  
Daniel Perez-Zsolt ◽  
Jorge Carrillo ◽  
Julià Blanco ◽  
Bonaventura Clotet ◽  
...  
Keyword(s):  
Viral Entry ◽  
Ebola Virus ◽  
Lessons Learned ◽  
Productive Infection ◽  
Target Cells ◽  
Emerging Viruses ◽  
Highly Pathogenic ◽  
Life Threatening ◽  
Pathogenic Viruses ◽  
Cellular Machinery

Viruses rely on the cellular machinery to replicate and propagate within newly infected individuals. Thus, viral entry into the host cell sets up the stage for productive infection and disease progression. Different viruses exploit distinct cellular receptors for viral entry; however, numerous viral internalization mechanisms are shared by very diverse viral families. Such is the case of Ebola virus (EBOV), which belongs to the filoviridae family, and the recently emerged coronavirus SARS-CoV-2. These two highly pathogenic viruses can exploit very similar endocytic routes to productively infect target cells. This convergence has sped up the experimental assessment of clinical therapies against SARS-CoV-2 previously found to be effective for EBOV, and facilitated their expedited clinical testing. Here we review how the viral entry processes and subsequent replication and egress strategies of EBOV and SARS-CoV-2 can overlap, and how our previous knowledge on antivirals, antibodies, and vaccines against EBOV has boosted the search for effective countermeasures against the new coronavirus. As preparedness is key to contain forthcoming pandemics, lessons learned over the years by combating life-threatening viruses should help us to quickly deploy effective tools against novel emerging viruses.

scholarly journals Nosocomial Transmission of Emerging Viruses via Aerosol-Generating Medical Procedures

Viruses ◽  
2019 ◽  
Vol 11 (10) ◽  
pp. 940 ◽  
Author(s):  
Seth D. Judson ◽  
Vincent J. Munster
Keyword(s):  
Health Care ◽  
Ebola Virus ◽  
Viral Infections ◽  
Nipah Virus ◽  
Hemorrhagic Fever ◽  
Nosocomial Transmission ◽  
Medical Procedures ◽  
Emerging Viruses ◽  
Pathogenic Viruses ◽  
Infection Control Guidelines

Recent nosocomial transmission events of emerging and re-emerging viruses, including Ebola virus, Middle East respiratory syndrome coronavirus, Nipah virus, and Crimean–Congo hemorrhagic fever orthonairovirus, have highlighted the risk of nosocomial transmission of emerging viruses in health-care settings. In particular, concerns and precautions have increased regarding the use of aerosol-generating medical procedures when treating patients with such viral infections. In spite of increasing associations between aerosol-generating medical procedures and the nosocomial transmission of viruses, we still have a poor understanding of the risks of specific procedures and viruses. In order to identify which aerosol-generating medical procedures and emerging viruses pose a high risk to health-care workers, we explore the mechanisms of aerosol-generating medical procedures, as well as the transmission pathways and characteristics of highly pathogenic viruses associated with nosocomial transmission. We then propose how research, both in clinical and experimental settings, could advance current infection control guidelines.

scholarly journals Schmallenberg virus: a systematic international literature review (2011-2019) from an Irish perspective

2019 ◽  
Vol 72 (1) ◽  
Author(s):  
Áine B. Collins ◽  
Michael L. Doherty ◽  
Damien J. Barrett ◽  
John F. Mee
Keyword(s):  
Scientific Literature ◽  
Current Knowledge ◽  
Clinical Signs ◽  
Control Measures ◽  
Schmallenberg Virus ◽  
Transmission Risk ◽  
Surveillance Program ◽  
Emerging Viruses ◽  
Biting Midges ◽  
Irish Case

Abstract In Autumn 2011, nonspecific clinical signs of pyrexia, diarrhoea, and drop in milk yield were observed in dairy cattle near the German town of Schmallenberg at the Dutch/German border. Targeted veterinary diagnostic investigations for classical endemic and emerging viruses could not identify a causal agent. Blood samples were collected from animals with clinical signs and subjected to metagenomic analysis; a novel orthobunyavirus was identified and named Schmallenberg virus (SBV). In late 2011/early 2012, an epidemic of abortions and congenital malformations in calves, lambs and goat kids, characterised by arthrogryposis and hydranencephaly were reported in continental Europe. Subsequently, SBV RNA was confirmed in both aborted and congenitally malformed foetuses and also in Culicoides species biting midges. It soon became evident that SBV was an arthropod-borne teratogenic virus affecting domestic ruminants. SBV rapidly achieved a pan-European distribution with most countries confirming SBV infection within a year or two of the initial emergence. The first Irish case of SBV was confirmed in the south of the country in late 2012 in a bovine foetus. Since SBV was first identified in 2011, a considerable body of scientific research has been conducted internationally describing this novel emerging virus. The aim of this systematic review is to provide a comprehensive synopsis of the most up-to-date scientific literature regarding the origin of SBV and the spread of the Schmallenberg epidemic, in addition to describing the species affected, clinical signs, pathogenesis, transmission, risk factors, impact, diagnostics, surveillance methods and control measures. This review also highlights current knowledge gaps in the scientific literature regarding SBV, most notably the requirement for further research to determine if, and to what extent, SBV circulation occurred in Europe and internationally during 2017 and 2018. Moreover, recommendations are also made regarding future arbovirus surveillance in Europe, specifically the establishment of a European-wide sentinel herd surveillance program, which incorporates bovine serology and Culicoides entomology and virology studies, at national and international level to monitor for the emergence and re-emergence of arboviruses such as SBV, bluetongue virus and other novel Culicoides-borne arboviruses.

scholarly journals Can Bats Serve as Reservoirs for Arboviruses?

Viruses ◽  
2019 ◽  
Vol 11 (3) ◽  
pp. 215 ◽  
Author(s):  
Anna C. Fagre ◽  
Rebekah C. Kading
Keyword(s):  
Viral Vectors ◽  
Virus Transmission ◽  
Blood Feeding ◽  
Ecological Niches ◽  
Emerging Viruses ◽  
Bed Bugs ◽  
Biting Midges ◽  
Bat Flies ◽  
Additional Mode ◽  
Free Ranging

Bats are known to harbor and transmit many emerging and re-emerging viruses, many of which are extremely pathogenic in humans but do not cause overt pathology in their bat reservoir hosts: henipaviruses (Nipah and Hendra), filoviruses (Ebola and Marburg), and coronaviruses (SARS-CoV and MERS-CoV). Direct transmission cycles are often implicated in these outbreaks, with virus shed in bat feces, urine, and saliva. An additional mode of virus transmission between bats and humans requiring further exploration is the spread of disease via arthropod vectors. Despite the shared ecological niches that bats fill with many hematophagous arthropods (e.g. mosquitoes, ticks, biting midges, etc.) known to play a role in the transmission of medically important arboviruses, knowledge surrounding the potential for bats to act as reservoirs for arboviruses is limited. To this end, a comprehensive literature review was undertaken examining the current understanding and potential for bats to act as reservoirs for viruses transmitted by blood-feeding arthropods. Serosurveillance and viral isolation from either free-ranging or captive bats are described in relation to four arboviral groups (Bunyavirales, Flaviviridae, Reoviridae, Togaviridae). Further, ecological associations between bats and hematophagous viral vectors are characterized (e.g. bat bloodmeals in mosquitoes, ingestion of mosquitoes by bats, etc). Lastly, knowledge gaps related to hematophagous ectoparasites (bat bugs and bed bugs (Cimicidae) and bat flies (Nycteribiidae and Streblidae)), in addition to future directions for characterization of bat-vector-virus relationships are described.

scholarly journals The Silent Partners

2020 ◽  
Author(s):  
Gal Almogy
Keyword(s):  
Hospital Admission ◽  
Health Systems ◽  
Emerging Viruses ◽  
Time And Space ◽  
Highly Pathogenic ◽  
Admission Rates ◽  
Current Health ◽  
Rapid Extinction ◽  
Pathogenic Viruses

Despite great advances in understanding the dynamics of viral epidemics, the emergence of rapidly spreading, highly pathogenic viruses remains a realistic and catastrophic possibility, which current health systems may not be able to fully contain. An intriguing feature in many recent zoonotic viral outbreaks is the presence of ‘superspreaders’, which are infected individuals that cause dramatically more new cases than the average. Here I study the effect of superspreaders on the early dynamics of emerging viruses that have not gained the capacity for efficient human-to-human transmission, i.e viruses with R0 < 1. I show that superspreaders have a higher chance of rapid extinction, but under ‘crowded’ conditions can lead to ‘outbreaks’, causing far more cases than regular viruses. Hence I suggest that outbreaks of highly pathogenic superspreaders are more likely when they coincide in time and space with an unrelated outbreak leading to increased hospital admission rates. These superspreader outbreaks may be difficult to detect, especially in the context of a different epidemic in progress, and can significantly affect mortality patterns observed in affected areas.

scholarly journals The Role of the Host Ubiquitin System in Promoting Replication of Emergent Viruses

Viruses ◽  
2021 ◽  
Vol 13 (3) ◽  
pp. 369
Author(s):  
Karl M. Valerdi ◽  
Adam Hage ◽  
Sarah van van Tol ◽  
Ricardo Rajsbaum ◽  
Maria I. Giraldo
Keyword(s):  
Virus Replication ◽  
Defense Mechanism ◽  
Replication Cycle ◽  
Post Translational Modification ◽  
Cellular Functions ◽  
Emerging Viruses ◽  
Highly Pathogenic ◽  
Ubiquitin System ◽  
Pathogenic Viruses

Ubiquitination of proteins is a post-translational modification process with many different cellular functions, including protein stability, immune signaling, antiviral functions and virus replication. While ubiquitination of viral proteins can be used by the host as a defense mechanism by destroying the incoming pathogen, viruses have adapted to take advantage of this cellular process. The ubiquitin system can be hijacked by viruses to enhance various steps of the replication cycle and increase pathogenesis. Emerging viruses, including severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), flaviviruses like Zika and dengue, as well as highly pathogenic viruses like Ebola and Nipah, have the ability to directly use the ubiquitination process to enhance their viral-replication cycle, and evade immune responses. Some of these mechanisms are conserved among different virus families, especially early during virus entry, providing an opportunity to develop broad-spectrum antivirals. Here, we discuss the mechanisms used by emergent viruses to exploit the host ubiquitin system, with the main focus on the role of ubiquitin in enhancing virus replication.

scholarly journals Metaviromics Reveals Unknown Viral Diversity in the Biting Midge Culicoides impunctatus

Viruses ◽  
2019 ◽  
Vol 11 (9) ◽  
pp. 865 ◽  
Author(s):  
Sejal Modha ◽  
Joseph Hughes ◽  
Giovanni Bianco ◽  
Heather M. Ferguson ◽  
Barbara Helm ◽  
...  
Keyword(s):  
High Throughput Sequencing ◽  
Rna Viruses ◽  
Current Knowledge ◽  
Specific Protein ◽  
Disease Vectors ◽  
Viral Diversity ◽  
Biting Midges ◽  
Biting Midge ◽  
Virus Sequence ◽  
Novel Virus

Biting midges (Culicoides species) are vectors of arboviruses and were responsible for the emergence and spread of Schmallenberg virus (SBV) in Europe in 2011 and are likely to be involved in the emergence of other arboviruses in Europe. Improved surveillance and better understanding of risks require a better understanding of the circulating viral diversity in these biting insects. In this study, we expand the sequence space of RNA viruses by identifying a number of novel RNA viruses from Culicoides impunctatus (biting midge) using a meta-transcriptomic approach. A novel metaviromic pipeline called MetaViC was developed specifically to identify novel virus sequence signatures from high throughput sequencing (HTS) datasets in the absence of a known host genome. MetaViC is a protein centric pipeline that looks for specific protein signatures in the reads and contigs generated as part of the pipeline. Several novel viruses, including an alphanodavirus with both segments, a novel relative of the Hubei sobemo-like virus 49, two rhabdo-like viruses and a chuvirus, were identified in the Scottish midge samples. The newly identified viruses were found to be phylogenetically distinct to those previous known. These findings expand our current knowledge of viral diversity in arthropods and especially in these understudied disease vectors.

Life, but not as we know it: exploring RNA viral diversity in soils through viromics

2020 ◽  
Author(s):  
Luke Hillary ◽  
Evelien Adriaenssens ◽  
Davey Jones ◽  
James McDonald
Keyword(s):  
Method Development ◽  
Viral Diversity ◽  
Dna Viruses ◽  
Holistic View ◽  
Viral Ecology ◽  
Global Context ◽  
Soil Microbial ◽  
Soil Ecosystems ◽  
Viral Communities ◽  
The Uk

<p>Viruses play a crucial and underexplored role in soil microbial ecosystems, but soil viral ecology has focused exclusively on DNA viruses. The role of RNA viruses in soil ecosystems has therefore been largely overlooked, despite their significant impact on public health and food security. Here, we report the first ever study to apply viromics to survey soil RNA viral communities from five sites along an altitudinal primary productivity gradient in the UK. We identified over 3,000 viral sequences, of which over half were unclassified, and newly identified viruses were placed in a global context by the phylogenetic comparison of their RNA-dependent RNA polymerase genes. Unlike DNA viral communities, the RNA viromes were heavily dominated by viruses of eukaryotes, including pathogens of plants, fungi, vertebrates and invertebrates. Sampling sites showed minimal similarity in viral community composition, suggesting that we have just scratched the surface of soil RNA viral diversity. Wider sequencing efforts and method development are required to further explore soil RNA viromes and understand their ecological function; however, this study represents an important step towards the characterisation of soil viral communities and interactions with their microbial hosts, which will provide a more holistic view of the biology of economically and ecologically important soils.</p>

scholarly journals The Silent Partners

2020 ◽  
Author(s):  
Gal Almogy
Keyword(s):  
Hospital Admission ◽  
Health Systems ◽  
Emerging Viruses ◽  
Time And Space ◽  
Highly Pathogenic ◽  
Admission Rates ◽  
Current Health ◽  
Rapid Extinction ◽  
Pathogenic Viruses

Despite great advances in understanding the dynamics of viral epidemics, the emergence of rapidly spreading, highly pathogenic viruses remains a realistic and catastrophic possibility, which current health systems may not be able to fully contain. An intriguing feature in many recent zoonotic viral outbreaks is the presence of superspreaders, which are infected individuals that cause dramatically more new cases than the average. Here I study the effect of superspreaders on the early dynamics of emerging viruses that have not gained the capacity for efficient human-to-human transmission, i.e viruses with R0 < 1. I show that superspreaders have a higher chance of rapid extinction, but under crowded conditions can lead to outbreaks, causing far more cases than regular viruses. I suggest that outbreaks of highly pathogenic superspreaders are more likely when they coincide in time and space with an unrelated outbreak leading to increased hospital admission rates. These superspreader outbreaks may be difficult to detect, especially in the context of a different epidemic in progress, and can significantly affect mortality patterns observed in affected areas.

scholarly journals Accounting for imperfect detection reveals role of host traits in structuring viral diversity of a wild bat community

2020 ◽  
Author(s):  
Anna R. Sjodin ◽  
Simon J. Anthony ◽  
Michael R. Willig ◽  
Morgan W. Tingley
Keyword(s):  
Detection Methods ◽  
Viral Diversity ◽  
Imperfect Detection ◽  
Species Identity ◽  
Viral Ecology ◽  
Individual Level ◽  
Multi Scale ◽  
Host Sex ◽  
Bat Conservation

AbstractUnderstanding how multi-scale host heterogeneity affects viral community assembly can illuminate ecological drivers of infection and host-switching. Yet, such studies are hindered by imperfect viral detection. To address this issue, we used a community occupancy model – refashioned for the hierarchical nature of molecular-detection methods – to account for failed detection when examining how individual-level host traits affect herpesvirus richness in eight species of wild bats. We then used model predictions to examine the role of host sex and species identity on viral diversity at the levels of host individual, population, and community. Results demonstrate that cPCR and viral sequencing failed to perfectly detect viral presence. Nevertheless, model estimates correcting for imperfect detection show that reproductively active bats, especially reproductively active females, have significantly higher viral richness, and host sex and species identity interact to affect viral richness. Further, host sex significantly affects viral turnover across host populations, as females host more heterogeneous viral communities than do males. Results suggest models of viral ecology benefit from integration of multi-scale host factors, with implications for bat conservation and epidemiology. Furthermore, by accounting for imperfect detection in laboratory assays, we demonstrate how statistical models developed for other purposes hold promising possibilities for molecular and epidemiological applications.

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