scholarly journals Microbiomes in an acidic rock–water cave system

2019 ◽  
Vol 366 (13) ◽  
Author(s):  
Katja Burow ◽  
Anja Grawunder ◽  
Marie Harpke ◽  
Sebastian Pietschmann ◽  
Ralf Ehrhardt ◽  
...  

ABSTRACT Belowground ecosystems are accessible by mining, where a specific microbial community can be discovered. The biodiversity of a former alum mine rich in carbon, but with a low pH of 2.6–3.7, was evaluated by DNA- and cultivation-dependent methods using samples of the black slate rock material, secondary mineralization phases and seepage water. Pyrite oxidation within the low-grade metamorphic Silurian black slate established high concentrations of Fe and $\rm{SO}_4^{2-}$ forming the extreme conditions visible with acidophilic and Fe-oxidizing microorganisms. In addition, an unexpected predominance of fungi in this C-rich and acidic cave ecosystem, including high numbers of Mucoromycota and Mortierellomycota, was detected. Therefore, fungal cultures were obtained, mainly from the secondary mineral phases that are iron phosphates. Hence, the fungi might well have been involved in phosphate mobilization there. The rock material itself is rich in organic carbon that can be used by oxidase activity. The cultivation setup mimicked the cave conditions (low temperature, low pH, oxic conditions), with one oligotrophic and one medium rich in nutrients that allowed for isolation of different fungal (and eutrophic bacterial) groups. The acidic conditions prevented the occurrence of many basidiomycetes, while the isolated fungi could survive these adverse conditions.

1984 ◽  
Vol 19 (2) ◽  
pp. 55-89 ◽  
Author(s):  
N.M. Dubrovsky ◽  
K.A. Morin ◽  
J.A. Cherry ◽  
D.J.A. Smyth

Abstract Investigations of the geochemistry of inactive pyritic uranium tailings in the Elliot Lake Mining district of Ontario have focused on the Nordic tailings management area, where two impoundments are located in natural bedrock basins. The tailings are 8-12 m thick and overlie a localized deposit of glaciofluvial sands. Analyses of the solid, liquid, and gas phases in the vadose zone of the tailings show that gas-phase oxygen levels drop rapidly within 0.7 to 1.5 m of the surface, indicating rapid oxygen consumption during pyrite oxidation. Oxidation during the past 15 to 20 years has caused a marked depletion of near-surface pyrite. The oxidation of pyrite in the vadose zone imparts to infiltrating precipitation high concentrations of Fe, SO42-, various heavy metals, and a pH generally between 1.5 and 4. The acidic infiltration moves downward at a rate of 0.2 to 2.0 m/yr, displacing high-pH groundwater that originated as process water discharged from the mill. It now occupies the entire tailings thickness over a small area of the tailings. At one location a well-defined plume of high-Fe2+ tailings-derived groundwater has developed in the sand aquifer adjacent to the tailings. The plume consists of three zones: an inner core characterized by Fe > 5000 mg/L, pH < 4.8, and elevated concentrations of several heavy metals and radionuclides; an outer zone with Fe < 2500 mg/L, pH > 5.5, and relatively low concentrations of heavy metals and radionuclides; and a transition zone separating the two. Although the average linear groundwater velocity is about 440 m/yr near the dam, reactions such as mineral dissolution, precipitation and coprecipitation retard the migration of the front of the inner core, producing an observed frontal migration rate of approximately 1 m/yr. Groundwater from the outer zone of the plume flows laterally towards a small stream, where a portion of it is now discharging into the stream bed. The discharge results in the precipitation of amorphous ferric hydroxide on the stream bed. Most of the H+ produced by Fe precipitation is buffered, and only a moderate decrease in stream pH is observed. Inner zone conditions will not reach the stream unless input of low-pH groundwater from the tailings continues for several hundred years. Although the rate of pyrite oxidation in the Nordic Main tailings has been decreasing, there is sufficient pyrite in the tailings to generate high-Fe groundwater for several decades or more. Calculated groundwater migration rates indicate that in the next few decades acidic, low-pH groundwater will occupy the entire tailings thickness over most of the tailings area, causing an increase in the total flux of contaminated groundwater into the underlying aquifer. The outer zone of the plume has already arrived at a small stream, and acidification of the surface waters may increase if the Fe concentration in the groundwater seepage increases.


1994 ◽  
Vol 267 (6) ◽  
pp. L797-L806 ◽  
Author(s):  
J. D. Crapo ◽  
G. Hayatdavoudi ◽  
M. J. Knapp ◽  
P. J. Fracica ◽  
W. G. Wolfe ◽  
...  

Moderate exposures to hyperoxia are becoming increasingly common in clinical medicine as advancing technology allows O2 to be more effectively delivered to nonintubated patients. The sensitivity of the lung to injury by a subchronic exposure to 60% O2 was investigated, using baboons and serial lobar biopsies. Because results obtained from different regions of the lung were compared, the alveolar architecture of different lung lobes of three controls was studied, with the use of electron microscopic morphometric analyses, to assess possible lobar differences in volume, surface, and numerical densities of cells and tissues. In animals exposed to 60% O2, the same techniques were used to assess specific tissue changes in the epithelial, interstitial, and endothelial compartments of the alveolar septa. All six lobes of the normal baboon lung were found to be identical with respect to alveolar architecture. Thus, for gases of low reactivity and given in high concentrations, such as O2, cross-comparisons between different lobes are appropriate. Exposure to 60% O2 was found to cause proliferation of alveolar type II epithelium, suggesting a low-grade, chronic epithelial injury. Animals allowed to recover for 8 wk in room air showed progressive changes in the alveolar interstitium, involving increases in both cells and matrix. Because sequential lobar resections were done, animals were exposed both to 60% O2 and to the effects of general anesthesia and thoracotomies. The exposure to 60% O2 for 2 wk in this experimental setting leads to an alveolar septal injury that includes a progressive interstitial fibrotic response.


1993 ◽  
Vol 50 (7) ◽  
pp. 1497-1503 ◽  
Author(s):  
Joseph Freda ◽  
D. Gordon McDonald

We measured the survival of transplanted embryos and tadpoles of the wood frog (Rana sylvatica), the American toad (Bufo americanus), and the spotted salamander (Ambystoma maculatum) in 16 ponds located approximately 60 km south of Sudbury, Ontario. Mortality of embryos of all species and mortality of B. americanus tadpoles were correlated only with water pH. In two low-pH ponds, high concentrations of dissolved organic compounds might have been a toxic component. Aluminum and pH were correlated with mortality for only R. sylvatica tadpoles. Overall, Al did not appear to be very toxic in both laboratory and field exposures possibly due to complexation by dissolved organic compounds.


2011 ◽  
Vol 5 (1) ◽  
pp. 245-257 ◽  
Author(s):  
F. Obleitner ◽  
C. Spötl

Abstract. Meteorological measurements were performed in a prominent ice cave (Eisriesenwelt, Austria) during a full annual cycle. The data show the basic features of a dynamically ventilated cave system with a well distinguished winter and summer regime. The calculated energy balance of the cave ice is largely determined by the input of long-wave radiation originating at the host rock surface. On average the turbulent fluxes withdraw energy from the surface. This is more pronounced during winter due to enhanced circulation and lower humidity. During summer the driving gradients reverse sign and the associated fluxes provide energy for melt. About 4 cm of ice were lost at the measurement site during a reference year. This was due to some sublimation during winter, while the major loss resulted from melt during summer. Small amounts of accumulation occurred during spring due to refreezing of seepage water. These results are largely based on employing a numerical mass and energy balance model. Sensitivity studies prove reliability of the calculated energy balance regarding diverse measurement uncertainties and show that the annual mass balance of the ice strongly depends on cave air temperature during summer and the availability of seepage water in spring.


2008 ◽  
Vol 5 (3) ◽  
pp. 1267-1287 ◽  
Author(s):  
K. Schwarz ◽  
J. A. C. Barth ◽  
P. Grathwohl ◽  
C. Postigo-Rebello

Abstract. We investigated one of the best-known and second largest karst areas in Germany (Blautopf Catchment) that offers a unique access waters of the unsaturated zone through a large cave system. As tracers for water flow and storage we measured stable isotopes (18O/16O and D/H ratios) in precipitation, seepage- and groundwater. The precipitation showed a distinct seasonal cycle with δ18O values between −2.6 and −22.6‰ during summer and winter, respectively. However, the isotope signals in seepage water in the caves as well as the discharge were completely buffered and ranged around an average δ18O value of −10‰. This value also matched the long-term average of the precipitation. In addition, the homogeneous isotopic composition of the Blautopf Spring was against expectation for its highly variable discharge (0.3 to 32 m3 s−1) that is typical for a fast responsive karst system. We explain the isotopic similarity between cave seepage and the Blautopf Spring (as an integral signal for groundwater) by nearly complete mixing of the water already in the vadose zone. The latter can be divided into the compartments soil, epikarst and rock matrix that all have good storage capacities and also allow diffusive exchange of solutes between mobile and less mobile matrix water. The above approach revealed new aspects about turnover and flow paths of the infiltrated water and thus helps to constrain the risk by pollution to the groundwater.


Symmetry ◽  
2021 ◽  
Vol 14 (1) ◽  
pp. 42
Author(s):  
Katerina Woodard ◽  
Jiri Neustupa

A number of pennate diatom genera typically have teratogenic deformations of their siliceous frustules due to the effects of environmental stress, such as high concentrations of heavy metals and low pH. However, the quantitative assessment of these deformations has rarely been applied. One species in which aberrations have frequently been reported is Eunotia bilunaris, which typically has bilaterally symmetric frustules with dorso-ventral differentiation. In this study, we aimed to illustrate the geometric morphometric analysis of symmetry as a tool for assessing the severity of teratogenic deformations. These were quantified by Procrustes superimposition of equidistant points placed along the valvar outlines in pairs of configurations based on their bilateral reflection symmetry. The shape deformations were mostly confined to central parts of the ventral outlines and were captured both by the symmetric and asymmetric subspaces of the variation. The amount of bilateral asymmetry in individual cells was negatively related to frustule size via the allometric power law relationship, illustrating that asymmetry increased in the asexual diminution series. The presented analysis provides a framework for the quantitative assessment of frustule deformations in eunotioid diatoms that can be used for the comparative scoring of teratogenic deviations among cells, populations, or species.


Cerâmica ◽  
2013 ◽  
Vol 59 (349) ◽  
pp. 134-140
Author(s):  
J. C. e Costa ◽  
T. Almeida ◽  
C. S. F. Gomes

Black slate transformed through a pyroplastic process named pyro-expansion or exfoliation has been explored in the present work in order to be used as sculptural material. Black slate is a highly fissile, fine grained and organic matter rich rock that is the product of the action of low-grade regional metamorphism on black shale (a sedimentary clay and organic matter rich, also fissile and fine grained rock). Black slate if fired at an adequate firing rate up to the temperature range 1000 ºC-1240 ºC shows great potential for the manufacture of sculptural pieces. The technical possibilities of the shaping or conformation of pyro-expanded black slate have also been studied, including the reactions that take place when two different black slate pieces are closely associated with each other, or when black slate pieces are closely associated to other materials, such as metals and ceramics. These interactions, while associating different materials that react with each other, emphasize the unique characteristics of new sculptural compositions increasing the plastic capacities of the pyro-expanded black slate. Some examples of the associations referred to will be shown, which highlight the close functional relationship between art and science; research involves the approach to new techniques and materials, looking at the development of unique plastic configurations.


2021 ◽  
Vol 52 (2) ◽  
pp. 19-28
Author(s):  
A. Lauková ◽  
M. Pogány Simonová ◽  
M. Tomáška ◽  
M. Kološta ◽  
M. Drončovský ◽  
...  

Abstract Strains potential such as bacteriocin activity, biofilm formation ability, growth in skim milk, susceptibility to antibiotics, tolerance to bile and low pH as well as enzyme production was tested in the species Lacticaseibacillus paracasei and Lactococcus lactis detected in Slovak raw goat milk. The strains showed mostly low-grade biofilm formation ability, susceptibility to antibiotics and sufficient tolerance to oxgall/bile. Lacticaseibacillus (Lcb.) paracasei ZM-1, ZM-2 and Lactococcus (Lc.) lactis PD MO 1/8 showed high tolerance to pH 3 (67 %, 83 % and 63 %, respectively). The strains showed bacteriocin activity against the principal indicator Enterococcus avium EA5 (inhibition zone ranging 5–24 mm). A concentrated substance of Lcb. paracasei LPa ML 12/1 (pH 6.3) inhibited EA5 strain (inhibition activity 100 AU ml–1). Lcb. paracasei ZM-1 and ZM-2 also produced a high amount of β-galactosidase (40 nmol). Although the strains indicated their beneficial potential, additional testing is needed; some tests are in processing for further possible application of selected strains in dairy.


2020 ◽  
Vol 16 (3) ◽  
pp. 268-275
Author(s):  
Geórgia R.R. de Alencar ◽  
Lailton da Silva Freire ◽  
Beatriz de Mello Pereira ◽  
Verbena R. da Silva ◽  
Aline C. Holanda ◽  
...  

Background: Recent studies have demonstrated the role of micronutrients in the manifestation of comorbidities associated with obesity. Vitamin D deficiency, in particular, appears to be associated with increased levels of inflammatory markers, which may lead to chronic low-grade inflammation, elevating the risk of chronic diseases such as diabetes, metabolic syndrome, and cardiovascular disease. The objective of this study was to perform a systematic review of observational studies conducted to investigate the effect of vitamin D deficiency on inflammatory markers in obese subjects. Methodology: This systematic review was conducted in accordance with the “STROBE” and PRISMA recommendations. Observational studies that evaluated the effect of vitamin D status on inflammatory markers in obese subjects were selected and reviewed. Searches were conducted in the PubMed, SciVerse Scopus, and Web of Science databases from February 21 to 22, 2018. Results: After the selection and removal of duplicate articles, 10 eligible articles were identified. Results from eight observational studies showed an association between vitamin D deficiency or insufficiency in the body and increased concentrations of inflammatory markers in obese individuals. On the other hand, two of the studies did not demonstrate any correlation. With regard to the inflammatory markers evaluated, eight studies showed high concentrations of ultra-sensitive C-reactive protein, five studies found an increase in interleukin-6 concentrations, and two studies noted increased levels of tumor necrosis factor. Conclusion: The data presented in this systematic review provide evidence of the association between vitamin D deficiency and increased inflammation in obesity.


2011 ◽  
Vol 63 (12) ◽  
pp. 2923-2928 ◽  
Author(s):  
Steven W. Van Ginkel ◽  
Ziming Yang ◽  
Bi-o Kim ◽  
Mark Sholin ◽  
Bruce E. Rittmann

Increased tightening of air regulations is leading more electric utilities to install flue gas desulfurization (FGD) systems. These systems produce brine containing high concentrations of nitrate, nitrite, and selenate which must be removed before discharge. The H2-based membrane biofilm reactor (MBfR) was shown to consistently remove nitrate, nitrite, and selenate at high efficiencies. The maximum selenate removal flux reached 362 mg Se m−2d−1 and was higher than that observed in earlier research, which shows continual improvement of the biofilm for selenate reduction. A low pH of 6.8 inhibited precipitation when treating actual FGD brine, yet did not inhibit removal. SO42− was not removed and therefore did not compete with nitrate, nitrite, and selenate reduction for the available H2.


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