scholarly journals Why and how might genetic and phylogenetic diversity be reflected in the identification of key biodiversity areas?

2015 ◽  
Vol 370 (1662) ◽  
pp. 20140019 ◽  
Author(s):  
T. M. Brooks ◽  
A. Cuttelod ◽  
D. P. Faith ◽  
J. Garcia-Moreno ◽  
P. Langhammer ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Threatened Species ◽  
Phylogenetic Diversity ◽  
Species Population ◽  
Threatened Taxa ◽  
Conservation Actions ◽  
Ecosystem Diversity ◽  
Species Specific ◽  
A Site ◽  
Specific Conservation

‘Key biodiversity areas' are defined as sites contributing significantly to the global persistence of biodiversity. The identification of these sites builds from existing approaches based on measures of species and ecosystem diversity and process. Here, we therefore build from the work of Sgró et al. (2011 Evol. Appl. 4 , 326–337. ( doi:10.1111/j.1752-4571.2010.00157.x )) to extend a framework for how components of genetic diversity might be considered in the identification of key biodiversity areas. We make three recommendations to inform the ongoing process of consolidating a key biodiversity areas standard: (i) thresholds for the threatened species criterion currently consider a site's share of a threatened species' population; expand these to include the proportion of the species' genetic diversity unique to a site; (ii) expand criterion for ‘threatened species' to consider ‘threatened taxa’ and (iii) expand the centre of endemism criterion to identify as key biodiversity areas those sites holding a threshold proportion of the compositional or phylogenetic diversity of species (within a taxonomic group) whose restricted ranges collectively define a centre of endemism. We also recommend consideration of occurrence of EDGE species (i.e. threatened phylogenetic diversity) in key biodiversity areas to prioritize species-specific conservation actions among sites.

Actualisation du catalogue des pteridophytes du Nord Ouest Algerien (region de Tlemcen). An update of the cheklist of pteridophytes from Nordwest Algeria (Tlemcen region)

2013 ◽  
Vol 38 ◽  
pp. 33-39 ◽  
Author(s):  
Boumediene Medjahdi ◽  
Assia Ltreuch-Belarouci ◽  
Rémy Prelli
Keyword(s):  
Nous Avons ◽  
Genetic Resources ◽  
Threatened Species ◽  
The Other ◽  
Natural Distribution ◽  
Ecological Characteristics ◽  
Statutory Protection ◽  
Ouest Algérien ◽  
A Site ◽  
Ressources Génétiques

Français. Un inventaire des ptéridophytes a été entrepris dans les forêts de la région de Tlemcen. L’inventaire de ces populations constitue une étape importante pour le développement des stratégies de conservation des ressources génétiques et de la diversité de ces populations sur l’ensemble de leur aire de distribution naturelle. Nous avons ainsi effectué le recensement et l’identification des fougères existantes dans la région de Tlemcen. Au total, plusieurs stations dont les caractéristiques écologiques diffèrent d’un site à un autre ont été prospectées, cela a permis l’identification de 26 taxons (dont 5 exceptionnellement rare). La création de réserves naturelles forestières renforcée par une protection réglementaire des espèces les plus menacées est nécessaire pour le maintien de ces communautés si particulières. English. An inventory of Pteridophyta was begun in the forests of the Tlemcen region. The inventory of these populations constitutes an important stage for the developement of the strategies of preservation of the genetic resources and the diversity of these populations on their whole area of natural distribution. We so made the inventory and the identification of the existing ferns in the region of Tlemcen. On the whole, several stations the ecological characteristics differ from a site in the other one were canvassed; they allowed the identification of 26 taxes (among which 5 exceptionally rare). The creation of forest nature reserves strengthened by a statutory protection of the most threatened species is necessary for the preservation of these particular communities.

scholarly journals Large numbers of vertebrates began rapid population decline in the late 19th century

2016 ◽  
Vol 113 (49) ◽  
pp. 14079-14084 ◽  
Author(s):  
Haipeng Li ◽  
Jinggong Xiang-Yu ◽  
Guangyi Dai ◽  
Zhili Gu ◽  
Chen Ming ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Population Size ◽  
Threatened Species ◽  
Driving Forces ◽  
Population Decline ◽  
Cumulative Effect ◽  
Extinction Time ◽  
Time Period ◽  
Large Numbers ◽  
The Difference

Accelerated losses of biodiversity are a hallmark of the current era. Large declines of population size have been widely observed and currently 22,176 species are threatened by extinction. The time at which a threatened species began rapid population decline (RPD) and the rate of RPD provide important clues about the driving forces of population decline and anticipated extinction time. However, these parameters remain unknown for the vast majority of threatened species. Here we analyzed the genetic diversity data of nuclear and mitochondrial loci of 2,764 vertebrate species and found that the mean genetic diversity is lower in threatened species than in related nonthreatened species. Our coalescence-based modeling suggests that in many threatened species the RPD began ∼123 y ago (a 95% confidence interval of 20–260 y). This estimated date coincides with widespread industrialization and a profound change in global living ecosystems over the past two centuries. On average the population size declined by ∼25% every 10 y in a threatened species, and the population size was reduced to ∼5% of its ancestral size. Moreover, the ancestral size of threatened species was, on average, ∼22% smaller than that of nonthreatened species. Because the time period of RPD is short, the cumulative effect of RPD on genetic diversity is still not strong, so that the smaller ancestral size of threatened species may be the major cause of their reduced genetic diversity; RPD explains 24.1–37.5% of the difference in genetic diversity between threatened and nonthreatened species.

scholarly journals Phylogenetic Diversity and Molecular Detection of Bacteria in Gull Feces

2008 ◽  
Vol 74 (13) ◽  
pp. 3969-3976 ◽  
Author(s):  
Jingrang Lu ◽  
Jorge W. Santo Domingo ◽  
Regina Lamendella ◽  
Thomas Edge ◽  
Stephen Hill
Keyword(s):  
16S Rrna ◽  
16S Rrna Gene ◽  
Phylogenetic Diversity ◽  
Bacterial Species ◽  
Rrna Gene ◽  
Fecal Dna ◽  
Environmental Waters ◽  
Potential Risks ◽  
Species Specific ◽  
Gut Microbial Community

ABSTRACT In spite of increasing public health concerns about the potential risks associated with swimming in waters contaminated with waterfowl feces, little is known about the composition of the gut microbial community of aquatic birds. To address this, a gull 16S rRNA gene clone library was developed and analyzed to determine the identities of fecal bacteria. Analysis of 282 16S rRNA gene clones demonstrated that the gull gut bacterial community is mostly composed of populations closely related to Bacilli (37%), Clostridia (17%), Gammaproteobacteria (11%), and Bacteriodetes (1%). Interestingly, a considerable number of sequences (i.e., 26%) were closely related to Catellicoccus marimammalium, a gram-positive, catalase-negative bacterium. To determine the occurrence of C. marimammalium in waterfowl, species-specific 16S rRNA gene PCR and real-time assays were developed and used to test fecal DNA extracts from different bird (n = 13) and mammal (n = 26) species. The results showed that both assays were specific to gull fecal DNA and that C. marimammalium was present in gull fecal samples collected from the five locations in North America (California, Georgia, Ohio, Wisconsin, and Toronto, Canada) tested. Additionally, 48 DNA extracts from waters collected from six sites in southern California, Great Lakes in Michigan, Lake Erie in Ohio, and Lake Ontario in Canada presumed to be impacted with gull feces were positive by the C. marimammalium assay. Due to the widespread presence of this species in gulls and environmental waters contaminated with gull feces, targeting this bacterial species might be useful for detecting gull fecal contamination in waterfowl-impacted waters.

scholarly journals The genetic legacy of fragmentation and overexploitation in the threatened medicinal African pepper-bark tree, Warburgia salutaris

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Annae M. Senkoro ◽  
Pedro Talhinhas ◽  
Fernanda Simões ◽  
Paula Batista-Santos ◽  
Charlie M. Shackleton ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Habitat Degradation ◽  
Random Mating ◽  
Diversity Management ◽  
Iucn Red List ◽  
Ex Situ ◽  
Management Plans ◽  
Conservation Actions ◽  
Genetic Diversity Management ◽  
High Level

AbstractThe pepper-bark tree (Warburgia salutaris) is one of the most highly valued medicinal plant species worldwide. Native to southern Africa, this species has been extensively harvested for the bark, which is widely used in traditional health practices. Illegal harvesting coupled with habitat degradation has contributed to fragmentation of populations and a severe decline in its distribution. Even though the species is included in the IUCN Red List as Endangered, genetic data that would help conservation efforts and future re-introductions are absent. We therefore developed new molecular markers to understand patterns of genetic diversity, structure, and gene flow of W. salutaris in one of its most important areas of occurrence (Mozambique). In this study, we have shown that, despite fragmentation and overexploitation, this species maintains a relatively high level of genetic diversity supporting the existence of random mating. Two genetic groups were found corresponding to the northern and southern locations. Our study suggests that, if local extinctions occurred in Mozambique, the pepper-bark tree persisted in sufficient numbers to retain a large proportion of genetic diversity. Management plans should concentrate on maintaining this high level of genetic variability through both in and ex-situ conservation actions.

scholarly journals Factors Affecting Zoo Visitors’ Conservation Beliefs and Knowledge of Large Carnivores in 2009 and a Dozen Years Later

2022 ◽  
Vol 14 (2) ◽  
pp. 890
Author(s):  
Vesna Oražem ◽  
Aleksandra Majić Skrbinšek ◽  
Andrej Šorgo ◽  
Iztok Tomažič
Keyword(s):  
Brown Bear ◽  
Eurasian Lynx ◽  
Factors Affecting ◽  
Large Carnivore ◽  
Gender Influence ◽  
Carnivore Species ◽  
Conservation Actions ◽  
Species Specific ◽  
Gender Factor ◽  
Learning Institutions

Teaching in a formal learning environment mainly focuses on gaining knowledge, and scarcely on the development of pro-environmental attitudes. Knowledge can also be gained in informal learning institutions, such as zoos, and their potential use in general public education should not be neglected. This paper explores factors influencing the conservation beliefs of zoo visitors about brown bears, grey wolves, and Eurasian lynx. The study undertaken in Zoo Ljubljana (Slovenia) consisted of surveys performed in 2009 (n = 613) and in 2021 (n = 257). The levels of knowledge and education influenced both supporting and opposing beliefs about the three large carnivore species. The gender factor was less uniform: both supporting and opposing beliefs about lynx were demonstrated, but only opposing beliefs about brown bear and wolf. The study indicates that knowledge has the most significant influence on conservation beliefs, thus highlighting the importance of educational and communication activities in management and conservation actions regarding large carnivore species. The varied gender influence suggests that species-specific educational activities should be encouraged.

scholarly journals Genome-wide markers reveal differentiation between and within the cryptic sister species, sunset and vermilion rockfish

2021 ◽  
Author(s):  
Gary C. Longo ◽  
John Harms ◽  
John R. Hyde ◽  
Matthew T. Craig ◽  
Ana Ramón-Laca ◽  
...  
Keyword(s):  
Management Strategies ◽  
Cost Effective ◽  
Sister Species ◽  
Nucleotide Polymorphisms ◽  
Relative Contribution ◽  
Genetic Groups ◽  
Cost Effective Method ◽  
Species Population ◽  
Single Complex ◽  
Species Specific

AbstractThe vermilion rockfish complex, which consists of the cryptic sister species vermilion and sunset rockfish, is one of the most valuable recreational fisheries on the U.S. West Coast. These species are currently managed as a single complex, and because of uncertainty surrounding the relative contribution of each species within existing data sources, the stock status of each species is not fully known. A reliable and cost-effective method is needed to disentangle these species that will allow for the development of abundance indices, life history profiles, and catch histories that may potentially support species-specific stock assessments. Using restriction-site associated DNA sequence (RADseq) markers we generated 10,003 polymorphic loci to characterize the vermilion rockfish complex. PCA and Bayesian clustering approaches based on these loci clearly distinguished between sunset and vermilion rockfishes and identified hybrid individuals. These loci included 203 highly differentiated (FST ≥ 0.99) single nucleotide polymorphisms, which we consider candidates in the planned development of a diagnostic assay capable of distinguishing between these cryptic species. In addition to clearly delineating to species, subsets of the interspecific markers allowed for insight into intraspecific differentiation in both species. Population genetic analyses for sunset rockfish identified two weakly divergent genetic groups with similar levels of genetic diversity. Vermilion rockfish, however, were characterized by three distinct genetic groups with much stronger signals of differentiation and significantly different genetic diversities. Collectively, these data will contribute to well-informed, species-specific management strategies to protect this valuable species complex.

scholarly journals New record of Barrio’s Frog, Insuetophrynus acarpicus Barrio, 1970 (Anura, Rhinodermatidae), in Los Ríos region, Chile

Check List ◽  
2020 ◽  
Vol 16 (6) ◽  
pp. 1519-1522
Author(s):  
Patricio Contreras Bravo ◽  
Fernando Bustos Véliz ◽  
Ignacio Rodriguez-Jorquera
Keyword(s):  
River Basin ◽  
New Record ◽  
National Park ◽  
The World ◽  
Conservation Actions ◽  
A Site

A new record of the Endangered, Chilean endemic Insuetophrynus acarpicus (Barrio 1970) is reported from Alerce Costero National Park, Chile. This species of frog is one of the most threatened anurans in the world, and, consequently, any new record of this species is highly important for assessing its known distribution and proposing urgent conservation actions. The new record is the first known site in the Chaihuín river basin, 15 km northwest of a site described by Segura in 2017. The new record fills a gap of the known distribution of I. acarpicus.

scholarly journals New insights into the genetic diversity of Leishmania RNA Virus 1 and its species-specific relationship with Leishmania parasites

PLoS ONE ◽  
2018 ◽  
Vol 13 (6) ◽  
pp. e0198727 ◽  
Author(s):  
Lilian Motta Cantanhêde ◽  
Flavia Gonçalves Fernandes ◽  
Gabriel Eduardo Melim Ferreira ◽  
Renato Porrozzi ◽  
Ricardo de Godoi Mattos Ferreira ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Rna Virus ◽  
Specific Relationship ◽  
Species Specific ◽  
Leishmania Parasites

scholarly journals Perceptions of Similarity Can Mislead Provenancing Strategies—An Example from Five Co-Distributed Acacia Species

Diversity ◽  
2020 ◽  
Vol 12 (8) ◽  
pp. 306
Author(s):  
Maurizio Rossetto ◽  
Peter D. Wilson ◽  
Jason Bragg ◽  
Joel Cohen ◽  
Monica Fahey ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
A Priori ◽  
Genetic Data ◽  
Environmental Data ◽  
Specific Data ◽  
Acacia Species ◽  
Simple Observation ◽  
Source Plant ◽  
Species Specific

Ecological restoration requires balancing levels of genetic diversity to achieve present-day establishment as well as long-term sustainability. Assumptions based on distributional, taxonomic or functional generalizations are often made when deciding how to source plant material for restoration. We investigate this assumption and ask whether species-specific data is required to optimize provenancing strategies. We use population genetic and environmental data from five congeneric and largely co-distributed species of Acacia to specifically ask how different species-specific genetic provenancing strategies are based on empirical data and how well a simple, standardized collection strategy would work when applied to the same species. We find substantial variability in terms of patterns of genetic diversity and differentiation across the landscape among these five co-distributed Acacia species. This variation translates into substantial differences in genetic provenancing recommendations among species (ranging from 100% to less than 1% of observed genetic variation across species) that could not have been accurately predicted a priori based on simple observation or overall distributional patterns. Furthermore, when a common provenancing strategy was applied to each species, the recommended collection areas and the evolutionary representativeness of such artificially standardized areas were substantially different (smaller) from those identified based on environmental and genetic data. We recommend the implementation of the increasingly accessible array of evolutionary-based methodologies and information to optimize restoration efforts.

scholarly journals Population Genomics of Bettongia lesueur: Admixing Increases Genetic Diversity with no Evidence of Outbreeding Depression

Genes ◽  
2019 ◽  
Vol 10 (11) ◽  
pp. 851 ◽  
Author(s):  
Kate Rick ◽  
Kym Ottewell ◽  
Cheryl Lohr ◽  
Rujiporn Thavornkanlapachai ◽  
Margaret Byrne ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Threatened Species ◽  
Population Genomics ◽  
Fold Increase ◽  
Recruitment Rate ◽  
Outbreeding Depression ◽  
Nucleotide Polymorphisms ◽  
Isolated Populations ◽  
Genomic Markers ◽  
Founder Populations

Small and isolated populations are subject to the loss of genetic variation as a consequence of inbreeding and genetic drift, which in turn, can affect the fitness and long-term viability of populations. Translocations can be used as an effective conservation tool to combat this loss of genetic diversity through establishing new populations of threatened species, and to increase total population size. Releasing animals from multiple genetically diverged sources is one method to optimize genetic diversity in translocated populations. However, admixture as a conservation tool is rarely utilized due to the risks of outbreeding depression. Using high-resolution genomic markers through double-digest restriction site-associated sequencing (ddRAD-seq) and life history data collected over nine years of monitoring, this study investigates the genetic and fitness consequences of admixing two genetically-distinct subspecies of Bettongia lesueur in a conservation translocation. Using single nucleotide polymorphisms (SNPs) identified from 215 individuals from multiple generations, we found an almost 2-fold increase in genetic diversity in the admixed translocation population compared to the founder populations, and this was maintained over time. Furthermore, hybrid class did not significantly impact on survivorship or the recruitment rate and therefore we found no indication of outbreeding depression. This study demonstrates the beneficial application of mixing multiple source populations in the conservation of threatened species for minimizing inbreeding and enhancing adaptive potential and overall fitness.

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