scholarly journals Empirical estimation of marine phytoplankton assemblages in coastal and offshore areas using an in situ multi-wavelength excitation fluorometer

2021 ◽  
Author(s):  
Taketoshi Kodama ◽  
Yukiko Taniuchi ◽  
Hiromi Kasai ◽  
Tamaha Yamaguchi ◽  
Misato Nakae ◽  
...  
Keyword(s):  
Reference Data ◽  
Vertical Direction ◽  
Japan Sea ◽  
Marine Phytoplankton ◽  
Empirical Estimation ◽  
Phytoplankton Assemblages ◽  
Plant Pigment ◽  
Multi Wavelength ◽  
Linear Inverse Model

AbstractPhytoplankton assemblages are important for understanding the quality of primary production in marine ecosystems. Here, we describe development of a methodology for monitoring marine phytoplankton assemblages using an in situ multi-wavelength excitation fluorometer (MEX) and its application for seasonal observations in coastal and offshore areas around Japan. The MEX recorded the fluorescence excited with nine light-emitting diodes, temperature, and sensor depth. We prepared reference datasets comprising temperature, MEX fluorescence, and plant-pigment-based chemotaxonomy phytoplankton assemblages. Target MEX fluorescence was decomposed by reference MEX fluorescence using a linear inverse model for calculating coefficients after the reference data were limited by temperature, followed by reconstruction of plant-pigment-based chemotaxonomy of the target MEX fluorescence using the coefficients and the chemotaxonomy assemblages of the reference data. Sensitivity analysis indicated poor estimation of the proportion and/or chlorophyll a-based abundance of chlorophytes, haptophytes, prasinophytes, and prochlorophytes; however, limiting the estimations to five chemotaxonomic groups [diatoms, dinoflagellates, cryptophytes, cyanobacteria (cyanophytes and prochlorophytes), and other eukaryotes (chlorophytes, haptophytes, and prasinophytes)] resulted in positive correlations of both the proportion and abundances, suggesting that the five taxonomic abundances were well-estimated using the MEX. Additionally, MEX observations denoted spatial and seasonal variations of phytoplankton assemblages, with high contributions from other eukaryotes in every area and season, cyanobacteria highly during the summer in surface Kuroshio and Japan Sea waters, and diatoms in the Oyashio and Oyashio–Kuroshio transition areas and the Okhotsk Sea. Furthermore, ratios of water-column-integrated chlorophyll-based abundances to those on the surface at the chemotaxonomy group level were differed among the areas and groups. These findings suggested that phytoplankton-assemblage monitoring in the vertical direction is essential for evaluation of their current biomass, and that the MEX promotes the acquisition of these observations.

scholarly journals Reference Measurements in Developing UAV Systems for Detecting Pests, Weeds, and Diseases

2021 ◽  
Vol 13 (7) ◽  
pp. 1238
Author(s):  
Jere Kaivosoja ◽  
Juho Hautsalo ◽  
Jaakko Heikkinen ◽  
Lea Hiltunen ◽  
Pentti Ruuttunen ◽  
...  
Keyword(s):  
Reference Data ◽  
Measurement Techniques ◽  
Synthetic Data ◽  
Ground Truth ◽  
Precision Farming ◽  
Aerial Imaging ◽  
Aerial Vehicle ◽  
Uav Images ◽  
Reference Measurements

The development of UAV (unmanned aerial vehicle) imaging technologies for precision farming applications is rapid, and new studies are published frequently. In cases where measurements are based on aerial imaging, there is the need to have ground truth or reference data in order to develop reliable applications. However, in several precision farming use cases such as pests, weeds, and diseases detection, the reference data can be subjective or relatively difficult to capture. Furthermore, the collection of reference data is usually laborious and time consuming. It also appears that it is difficult to develop generalisable solutions for these areas. This review studies previous research related to pests, weeds, and diseases detection and mapping using UAV imaging in the precision farming context, underpinning the applied reference measurement techniques. The majority of the reviewed studies utilised subjective visual observations of UAV images, and only a few applied in situ measurements. The conclusion of the review is that there is a lack of quantitative and repeatable reference data measurement solutions in the areas of mapping pests, weeds, and diseases. In addition, the results that the studies present should be reflected in the applied references. An option in the future approach could be the use of synthetic data as reference.

Understanding the phase formation kinetics of nano-crystalline kesterite deposited on mesoscopic scaffolds via in situ multi-wavelength Raman-monitored annealing

2016 ◽  
Vol 18 (42) ◽  
pp. 29435-29446 ◽  
Author(s):  
Zhuoran Wang ◽  
Samir Elouatik ◽  
George P. Demopoulos
Keyword(s):  
Real Time ◽  
Phase Formation ◽  
Formation Kinetics ◽  
Nano Crystalline ◽  
Multi Wavelength ◽  
Real Time Information ◽  
Kinetics Of ◽  
Time Information ◽  
Annealing Method

The in situ Raman monitored annealing method is developed in this work to provide real-time information on phase formation and crystallinity evolution of kesterite deposited on a TiO2 mesoscopic scaffold.

scholarly journals Metallic conduction through van der Waals interfaces in ultrathin $$\hbox{Bi}_2\hbox{Te}_3$$ films

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Shinichiro Hatta ◽  
Ko Obayashi ◽  
Hiroshi Okuyama ◽  
Tetsuya Aruga
Keyword(s):  
Photoelectron Spectroscopy ◽  
Van Der Waals ◽  
Vertical Direction ◽  
Conductivity Measurement ◽  
Spatial Separation ◽  
Mean Free Path ◽  
Conduction Path ◽  
Conductivity Increase ◽  
The Impact

AbstractWhile the van der Waals (vdW) interface in layered materials hinders the transport of charge carriers in the vertical direction, it serves a good horizontal conduction path. We have investigated electrical conduction of few quintuple-layer (QL) $$\hbox {Bi}_2\hbox {Te}_3$$ Bi 2 Te 3 films by in situ four-point probe conductivity measurement. The impact of the vdW (Te–Te) interface appeared as a large conductivity increase with increasing thickness from 1 to 2 QL. Angle-resolved photoelectron spectroscopy and first-principles calculations reveal the confinement of bulk-like conduction band (CB) state into the vdW interface. Our analysis based on the Boltzmann equation showed that the conduction of the CB has a long mean free path compared to the surface-state conduction. This is mainly attributed to the spatial separation of the CB electrons and the donor defects located at the Bi sites.

On properties of seawater defined by temperature, salinity, and pressure

2021 ◽  
Vol 79 (3) ◽  
pp. 121-147
Author(s):  
George Veronis
Keyword(s):  
Vertical Direction ◽  
Great Depth ◽  
Local Potential ◽  
Potential Density ◽  
Marine Research ◽  
Station Data ◽  
Starting Point ◽  
The World ◽  
Gravitational Stability

Hydrographic station data, consisting principally of temperature and salinity determinations, have been used by physical oceanographers to develop a climatological picture of the distribution of these quantities in the oceans of the world. Density as determined by Knudsen's formula, taken together with hydrostatic and geostrophic dynamics, also provides a crude picture of oceanic flow. However, the data probably contain substantially more information than has been derived from them in the past.The quantity that is orthogonal to potential-density curves in the S plane is suggested as a useful variable to complement the information contained in potential density. The derivation of this quantity, denoted by τ in this paper, is straightforward. A polynomial expression for τ that is suitable for computer calculations of τ from hydrographic station data is given. Shown are examples of hydrographic station data from the Atlantic plotted on the τσ diagram. The information contained in the τσ diagram shows many of the features exhibited in the TS plane. Vertical sections of τ appear to provide information about mixing in different parts of the Atlantic. The distribution of τ for abyssal waters at selected stations in the oceans of the world resembles the distribution of abyssal density as plotted by Lynn and Reid (1968). From the data presented, it appears that τ may serve as a good tracer for abyssal water movements.Since τ is defined to be orthogonal to σ, the expectation is that τ is a dynamically passive variable. However, since σ does not correlate with abyssal densities, it appears to lose dynamical significance at great depth, and τ assumes dynamical significance because of its orthogonality to σ. This unexpected feature leads to an exploration of the dynamical significance of σ. A natural starting point is the question of stability of abyssal water.A distinction is made between stability as determined by in situ determinations and as determined by the potential-density (σ) distribution. Simple examples are presented to show that analysis based on σ alone can lead to incorrect conclusions about gravitational stability of the water in the abyssal ocean. The reason is that seawater is a multicomponent thermodynamic system, and the thermodynamic coefficients are functions of pressure, salinity, and temperature. This functional dependence leads to adjustments in density as a water particle moves adiabatically in the vertical direction so that a layer of water that appears to be unstable near the surface may be stable (as determined by in situ determination) at great depth. A local potential density, which is simply the vertical integral of the in situ stability, is derived. This quantity gives a precise picture of gravitational stability in the vertical direction. Some distributions of local potential density are shown.Originally published May 15, 1972, in the Journal of Marine Research 30(2), 227???255.

scholarly journals Spatial variability of phytoplankton pigment distributions in the Subtropical South Pacific Ocean: comparison between in situ and predicted data

2008 ◽  
Vol 5 (2) ◽  
pp. 353-369 ◽  
Author(s):  
J. Ras ◽  
H. Claustre ◽  
J. Uitz
Keyword(s):  
High Performance ◽  
South Pacific ◽  
Hplc Method ◽  
Trophic Levels ◽  
Phytoplankton Assemblages ◽  
Tropical Water ◽  
South Pacific Ocean ◽  
Upwelled Water ◽  
Gyre System

Abstract. In the frame of the BIOSOPE cruise in 2004, the spatial distribution and structure of phytoplankton pigments was investigated along a transect crossing the ultra-oligotrophic South Pacific Subtropical Gyre (SPSG) between the Marquesas Archipelago (141° W–8° S) and the Chilean upwelling (73° W–34° S). A High Performance Liquid Chromatography (HPLC) method was improved in order to be able to accurately quantify pigments over such a large range of trophic levels, and especially from strongly oligotrophic conditions. Seven diagnostic pigments were associated to three phytoplankton size classes (pico-, nano and microphytoplankton). The total chlorophyll-α concentrations [TChlα] in surface waters were the lowest measured in the centre of the gyre, reaching 0.017 mg m−3. Pigment concentrations at the Deep Chlorophyll Maximum (DCM) were generally 10 fold the surface values. Results were compared to predictions from a global parameterisation based on remotely sensed surface [TChlα]. The agreement between the in situ and predicted data for such contrasting phytoplankton assemblages was generally good: throughout the oligotrophic gyre system, picophytoplankton (prochlorophytes and cyanophytes) and nanophytoplankton were the dominant classes. Relative bacteriochlorophyll-α concentrations varied around 2%. The transition zone between the Marquesas and the SPSG was also well predicted by the model. However, some regional characteristics have been observed where measured and modelled data differ. Amongst these features is the extreme depth of the DCM (180 m) towards the centre of the gyre, the presence of a deep nanoflagellate population beneath the DCM or the presence of a prochlorophyte-enriched population in the formation area of the high salinity South Pacific Tropical Water. A coastal site sampled in the eutrophic upwelling zone, characterised by recently upwelled water, was significantly and unusually enriched in picoeucaryotes, in contrast with an offshore upwelling site where a more typical senescent diatom population prevailed.

scholarly journals Effect of incubation time and substrate concentration on N-uptake rates by phytoplankton in the Bay of Bengal

2005 ◽  
Vol 2 (5) ◽  
pp. 1331-1352
Author(s):  
S. Kumar ◽  
R. Ramesh ◽  
S. Sardesai ◽  
M. S. Sheshshayee
Keyword(s):  
Incubation Time ◽  
Uptake Rate ◽  
Nitrate Uptake ◽  
N Uptake ◽  
Marine Phytoplankton ◽  
Total Production ◽  
New Production ◽  
Urea Uptake ◽  
Uptake Rates

Abstract. We report here the results of three experiments, which are slight variations of the 15N method (JGOFS protocol) for determination of new production. The first two test the effect of (i) duration of incubation time and (ii) concentration of tracer added on the uptake rates of various N-species (nitrate, ammonium and urea) by marine phytoplankton; while the third compares in situ and deck incubations from dawn to dusk. Results indicate that nitrate uptake can be underestimated by experiments where incubation times shorter than 4h or when more than 10% of the ambient concentration of nitrate is added prior to incubation. The f-ratio increases from 0.28 to 0.42 when the incubation time increases from two to four hours. This may be due to the observed increase in the uptake rate of nitrate and decrease in the urea uptake rate. Unlike ammonium [y{=}2.07x{-}0.002\\, (r2=0.55)] and urea uptakes [y{=}1.88x{+}0.004 (r2=0.88)], the nitrate uptake decreases as the concentration of the substrate (x) increases, showing a negative correlation [y{=}-0.76x+0.05 (r2=0.86)], possibly due to production of glutamine, which might suppress nitrate uptake. This leads to decline in the f-ratio from 0.47 to 0.10, when concentration of tracer varies from 0.01 to 0.04μ M. The column integrated total productions are 519 mg C m-2 d-1 and 251 mg C m-2 d-1 for in situ and deck incubations, respectively. The 14C based production at the same location is ~200 mg C m-2 d-1, which is in closer agreement to the 15N based total production measured by deck incubation.

scholarly journals Estimation of the Particulate Organic Carbon to Chlorophyll-a Ratio Using MODIS-Aqua in the East/Japan Sea, South Korea

2020 ◽  
Vol 12 (5) ◽  
pp. 840 ◽  
Author(s):  
Dabin Lee ◽  
SeungHyun Son ◽  
HuiTae Joo ◽  
Kwanwoo Kim ◽  
Myung Joon Kim ◽  
...  
Keyword(s):  
Organic Carbon ◽  
Particulate Organic Carbon ◽  
Chlorophyll A ◽  
Primary Productivity ◽  
Seasonal Variability ◽  
Japan Sea ◽  
Global Ocean ◽  
Phytoplankton Communities

In recent years, the change of marine environment due to climate change and declining primary productivity have been big concerns in the East/Japan Sea, Korea. However, the main causes for the recent changes are still not revealed clearly. The particulate organic carbon (POC) to chlorophyll-a (chl-a) ratio (POC:chl-a) could be a useful indicator for ecological and physiological conditions of phytoplankton communities and thus help us to understand the recent reduction of primary productivity in the East/Japan Sea. To derive the POC in the East/Japan Sea from a satellite dataset, the new regional POC algorithm was empirically derived with in-situ measured POC concentrations. A strong positive linear relationship (R2 = 0.6579) was observed between the estimated and in-situ measured POC concentrations. Our new POC algorithm proved a better performance in the East/Japan Sea compared to the previous one for the global ocean. Based on the new algorithm, long-term POC:chl-a ratios were obtained in the entire East/Japan Sea from 2003 to 2018. The POC:chl-a showed a strong seasonal variability in the East/Japan Sea. The spring and fall blooms of phytoplankton mainly driven by the growth of large diatoms seem to be a major factor for the seasonal variability in the POC:chl-a. Our new regional POC algorithm modified for the East/Japan Sea could potentially contribute to long-term monitoring for the climate-associated ecosystem changes in the East/Japan Sea. Although the new regional POC algorithm shows a good correspondence with in-situ observed POC concentrations, the algorithm should be further improved with continuous field surveys.

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