scholarly journals DNA metabarcoding reveals host-specific communities of arthropods residing in fungal fruit bodies

2021 ◽  
Author(s):  
Sundy Maurice ◽  
Havard Kauserud ◽  
Tone Birkemoe ◽  
Rannveig Jacobsen ◽  
Anne Sverdrup-Thygeson ◽  
...  
Keyword(s):  
Surface Area ◽  
Community Composition ◽  
Boreal Forests ◽  
Fruit Body ◽  
Wood Decay ◽  
Volume Ratio ◽  
Arthropod Communities ◽  
Decay Fungi ◽  
Chemical Defences ◽  
Dna Metabarcoding

Biological communities within living organisms are structured by their host's traits. How host traits affect biodiversity and community composition is poorly explored for some associations, such as arthropods within fungal fruit bodies. Using DNA metabarcoding, we revealed the arthropod communities in living fruit bodies of eleven wood-decay fungi from boreal forests and investigated how they were affected by different fungal traits. Arthropod diversity was higher in fruit bodies with a larger surface area-to-volume ratio, suggesting that colonisation is crucial to maintain arthropod populations. Diversity was not higher in long-lived fruit bodies, most likely because these fungi invest in physical or chemical defences against arthropods. Arthropod community composition was structured by all measured host traits, namely fruit body size, thickness, surface area, morphology and toughness. Notably, we identified a community gradient where soft and short-lived fruit bodies harboured more true flies, while tougher and long-lived fruit bodies had more oribatid mites and beetles, which might reflect different development times of the arthropods. Ultimately, close to 75% of the arthropods were specific to one or two fungal hosts. Besides revealing surprisingly diverse and host-specific arthropod communities within fungal fruit bodies, our study provided insight on how host traits structure communities.

scholarly journals Altitudinal upwards shifts in fungal fruiting in the Alps

2020 ◽  
Vol 287 (1919) ◽  
pp. 20192348 ◽  
Author(s):  
Jeffrey Diez ◽  
Håvard Kauserud ◽  
Carrie Andrew ◽  
Einar Heegaard ◽  
Irmgard Krisai-Greilhuber ◽  
...  
Keyword(s):  
Environmental Changes ◽  
Fruit Body ◽  
Wood Decay ◽  
Fungal Species ◽  
Ecosystem Functions ◽  
European Alps ◽  
Decay Fungi ◽  
Wood Decay Fungi ◽  
Physiological Limit ◽  
The Alps

Many plant and animal species are changing their latitudinal and/or altitudinal distributions in response to climate change, but whether fungi show similar changes is largely unknown. Here, we use historical fungal fruit body records from the European Alps to assess altitudinal changes in fungal fruiting between 1960 and 2010. We observe that many fungal species are fruiting at significantly higher elevations in 2010 compared to 1960, and especially so among soil-dwelling fungi. Wood-decay fungi, being dependent on the presence of one or a few host trees, show a slower response. Species growing at higher elevations changed their altitudinal fruiting patterns significantly more than lowland species. Environmental changes in high altitudes may lead to proportionally stronger responses, since high-altitude species live closer to their physiological limit. These aboveground changes in fruiting patterns probably mirror corresponding shifts in belowground fungal communities, suggesting parallel shifts in important ecosystem functions.

scholarly journals Impact of Field and Laboratory Environmental Conditions on the Diversity of Wood-Decay Fungi in the Forests of Northwest Arkansas

2020 ◽  
Vol 14 (3) ◽  
pp. 1801-1808
Author(s):  
Nawaf I. Alshammari ◽  
Vajid N. Veettil ◽  
Abdel Moneim E. Sulieman ◽  
S.L. Stephenson
Keyword(s):  
Woody Debris ◽  
Fruit Body ◽  
Fungal Growth ◽  
Wood Decay ◽  
Its Region ◽  
Growth Conditions ◽  
Fungal Species ◽  
Decay Fungi ◽  
Northwest Arkansas ◽  
Taxonomic Groups

Environmental factors such as temperature and humidity directly affect the growth and fruit bodies of fungi. We studied the diversity of wood decaying fungal species, which have grown on same substrate in forest as well as laboratory environment. Ten specimens of fruit body of wood-decaying fungi and 24 random pieces of coarse wooden debris were collected from the forest of northwest Arkansas. The samples of coarse woody debris were incubated in laboratory-growth chambers for two months to promote the fungal growth. Fourty-two different species of wood-decay fungal isolates were recovered and identified by internal transcribed spacer (ITS) region sequencing. The isolates from the forest belonged to twenty-two different taxa whereas twenty taxonomic groups were reported from the growth compartments. Remarkably, data observed from two sets did not shared any taxon. These results indicated that environmental growth conditions play crucial role on fungal diversity even if grown on same substrates.

Evaluation of Nanotechniques and Conventional Techniques for the Removal of Dioxins

2018 ◽  
Vol 9 (1) ◽  
pp. 79-84
Author(s):  
Vaishali V. Shahare ◽  
Rajni Grover ◽  
Suman Meena
Keyword(s):  
Soil Sample ◽  
Human Health ◽  
Surface Area ◽  
Contaminated Soil ◽  
Conventional Treatment ◽  
Volume Ratio ◽  
Soil Samples ◽  
Dioxins And Furans ◽  
Palladized Iron ◽  
The Impact

Background: The persistent dioxins/furans has caused a worldwide concern as they influence the human health. Recent research indicates that nonmaterial may prove effective in the degradation of Dioxins/furans. The nanomaterials are very reactive owing to their large surface area to volume ratio and large number of reactive sites. However, nanotechnology applications face both the challenges and the opportunities to influence the area of environmental protection. Objective: i) To study the impact of oil mediated UV-irradiations on the removal of 2,3,7,8-TCDD, 2,3,7,8-TCDF, OCDD and OCDF in simulated soil samples. ii) To compare the conventional treatment methods with the modern available nanotechniques for the removal of selected Dioxins/furans from soil samples. Methods: The present work has investigated an opportunity of the degradation of tetra and octachlorinated dioxins and furans by using oil mediated UV radiations with subsequent extraction of respective dioxins/furans from soils. The results have been compared with the available nanotechniques. Results: The dioxin congeners in the simulated soil sample showed decrease in concentration with the increase in the exposure time and intensity of UV radiations. The dechlorination of PCDD/Fs using palladized iron has been found to be effective. Conclusion: Both the conventional methods and nanotechnology have a dramatic impact on the removal of Dioxins/furans in contaminated soil. However, the nanotechniques are comparatively costlier and despite the relatively high rates of PCDDs dechlorination by Pd/nFe, small fraction of the dioxins are recalcitrant to degradation over considerable exposure times.

scholarly journals Precise regulation of the relative rates of surface area and volume synthesis in bacterial cells growing in dynamic environments

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Handuo Shi ◽  
Yan Hu ◽  
Pascal D. Odermatt ◽  
Carlos G. Gonzalez ◽  
Lichao Zhang ◽  
...  
Keyword(s):  
Growth Rate ◽  
Time Delay ◽  
Surface Area ◽  
Environmental Changes ◽  
Volume Ratio ◽  
Dynamic Environments ◽  
Bacterial Cells ◽  
Bacterial Growth Rate ◽  
State Size ◽  
Insight Into

AbstractThe steady-state size of bacterial cells correlates with nutrient-determined growth rate. Here, we explore how rod-shaped bacterial cells regulate their morphology during rapid environmental changes. We quantify cellular dimensions throughout passage cycles of stationary-phase cells diluted into fresh medium and grown back to saturation. We find that cells exhibit characteristic dynamics in surface area to volume ratio (SA/V), which are conserved across genetic and chemical perturbations as well as across species and growth temperatures. A mathematical model with a single fitting parameter (the time delay between surface and volume synthesis) is quantitatively consistent with our SA/V experimental observations. The model supports that this time delay is due to differential expression of volume and surface-related genes, and that the first division after dilution occurs at a tightly controlled SA/V. Our minimal model thus provides insight into the connections between bacterial growth rate and cell shape in dynamic environments.

Growth inhibition of wood-decay fungi by lignin-related aromatic compounds

2021 ◽  
Author(s):  
Cédric Cabral Almada ◽  
Mathilde Montibus ◽  
Frédérique Ham-Pichavant ◽  
Sandra Tapin-Lingua ◽  
Gilles Labat ◽  
...  
Keyword(s):  
Growth Inhibition ◽  
Aromatic Compounds ◽  
Wood Decay ◽  
Decay Fungi ◽  
Wood Decay Fungi

scholarly journals An Italian Research Culture Collection of Wood Decay Fungi

Diversity ◽  
2020 ◽  
Vol 12 (2) ◽  
pp. 58 ◽  
Author(s):  
Carolina Elena Girometta ◽  
Annarosa Bernicchia ◽  
Rebecca Michela Baiguera ◽  
Francesco Bracco ◽  
Simone Buratti ◽  
...  
Keyword(s):  
Central Italy ◽  
Wood Decay ◽  
Mediterranean Area ◽  
Culture Collection ◽  
White Rot ◽  
Temperate Climate ◽  
Research Culture ◽  
Decay Fungi ◽  
Mn Peroxidase ◽  
The Mediterranean

One of the main aims of the University of Pavia mycology laboratory was to collect wood decay fungal (WDF) strains in order to deepen taxonomic studies, species distribution, officinal properties or to investigate potential applications such as biocomposite material production based on fungi. The Italian Alps, Apennines and wood plains were investigated to collect Basidiomycota basidiomata from living or dead trees. The purpose of this study was to investigate the wood decay strains of the Mediterranean area, selecting sampling sites in North and Central Italy, including forests near the Ligurian and Adriatic seas, or near the Lombardy lakes. The isolation of mycelia in pure culture was performed according to the current methodology and the identity of the strains was confirmed by molecular analyses. The strains are maintained in the Research Culture Collection MicUNIPV of Pavia University (Italy). Among the 500 WDF strains in the collection, the most interesting isolates from the Mediterranean area are: Dichomitus squalens (basidioma collected from Pinus pinea), Hericium erinaceus (medicinal mushroom), Inocutis tamaricis (white-rot agent on Tamarix trees), Perenniporia meridionalis (wood degrader through Mn peroxidase) and P. ochroleuca. In addition, strains of species related to the Mediterranean climate (e.g., Fomitiporia mediterranea and Cellulariella warnieri) were obtained from sites with a continental-temperate climate.

scholarly journals Detecting Heterobasidion irregulare in Minnesota and Assessment of Indigenous Fungi on Pines

Forests ◽  
2021 ◽  
Vol 12 (1) ◽  
pp. 57
Author(s):  
Eric Otto ◽  
Benjamin Held ◽  
Samuel Redford ◽  
Robert A. Blanchette
Keyword(s):  
Real Time ◽  
Real Time Pcr ◽  
Wood Decay ◽  
Positive Control ◽  
Red Pine ◽  
Pcr Assay ◽  
Nested Polymerase Chain Reaction ◽  
Decay Fungi ◽  
Field Surveys ◽  
Heterobasidion Irregulare

Heterobasidion irregulare is one of the most problematic forest pathogens in the northern hemisphere, but has only been found relatively recently in the north central United States. Discovered in Wisconsin in 1993, but probably established sometime before that, it quickly spread throughout the state. In November 2014, it was found in southeastern Minnesota. Field surveys were then conducted throughout Minnesota with the focus in the southeast near the initial discovery. To find additional infection sites, surveys were conducted with accompanying aerial imagery of red pine (Pinus resinosa Aiton) stands that were previously thinned. Samples were collected from selected sites with dead and dying trees as well as samples from stumps in recently thinned pine stands. These samples were processed first with a nested polymerase chain reaction (PCR) protocol, which was replaced by a real-time PCR assay after its development. No samples tested positive for H. irregulare using these methods and no cultures from isolations were obtained outside the original infection area. Other indigenous fungi were also identified. The majority were wood decay fungi in the Basidiomycota. A spore collection study was also conducted after field surveys. Automated rotary arm spore collectors were used and assayed with an ITS TaqMan real-time PCR assay. Collectors were placed strategically in different areas of Minnesota. A positive control was used in an infected red pine plantation in Wisconsin and this location had the highest number of spores trapped, with 63,776 over a week period. Spores of H. irregulare were detected at several sites in Minnesota, with the highest spore total observed in traps at 413 over a week period. All other locations sampled also had some spores collected except Itasca State Park located in northwestern Minnesota. The weekly deposition of spores ranged from 0 to 1.26 m−2 h−1. Low spore levels occurring in Minnesota indicate that some spores are present, but they are currently being detected in amounts that may not be sufficient for colonization to be successful.

Aliphatic acids as spore germination inhibitors of wood-decay fungi in vitro

1985 ◽  
Vol 63 (2) ◽  
pp. 337-339 ◽  
Author(s):  
Elmer L. Schmidt
Keyword(s):  
Spore Germination ◽  
Germ Tube ◽  
White Rot Fungi ◽  
Wood Decay ◽  
White Rot ◽  
Malt Extract ◽  
Decay Fungi ◽  
Aliphatic Acids ◽  
Wood Decay Fungi

Influences of eight saturated aliphatic acids (C5–C10, C12, and C16) on basidiospores of four isolates of wood-decay fungi (Poria tenuis and Trametes hispida, white rot fungi, and two isolates of the brown rot fungus Gloeophyllum trabeum) were observed in vitro. Spore responses after 24 h on malt extract agar containing 10, 102 or 103 ppm of each acid included normal germination, delay of germ tube emergence, vacuolation and degeneration of spore cytoplasm, and prevention of germ tube development without spore destruction. Acids of chain length C5–C10 prevented spore germination and killed spores of all fungi at concentrations of 20–50 ppm in media, whereas other acids tested were less active. Spore germination assay of decay fungi may prove useful as a screening tool to compare potency of wood preservatives.

Fungal deterioration of second-growth Douglas-fir logs in coastal British Columbia

1970 ◽  
Vol 48 (9) ◽  
pp. 1541-1551 ◽  
Author(s):  
R. B. Smith ◽  
H. M. Craig ◽  
D. Chu
Keyword(s):  
Seasonal Pattern ◽  
Wood Decay ◽  
Late Summer ◽  
Douglas Fir ◽  
White Rot ◽  
Decay Fungi ◽  
Deterioration Rate ◽  
Second Growth ◽  
Autumn And Winter ◽  
Fungal Deterioration

Fungal deterioration of second-growth Douglas-fir logs, felled each month from August 1961 to May 1962, was studied 2, 4, and 6 years after felling. Decay increased from 10% of log volumes after 2 years to 47% after 6 years. The rate of decay, particularly for the brown cubical type, was greater for autumn- and winter-felled logs than for those felled in the spring and late summer, and closely paralleled the seasonal pattern of ambrosia beetle attack.Decay rates increased with decreasing log size, increasing percentage of sapwood, and increasing height of log above ground. For the same diameter of log, base logs decayed less rapidly than second logs, possibly because of their lower proportion of sapwood in relation to heartwood.Decay expressed as a percentage of total log volume (Y) may be estimated (R2 = 0.71) with the following equation: Y = 13.2 + 10.7X1 − 3.2X2, where X1 = years elapsed and X2 = d.i.b. (diameter inside bark) top of log.Of 30 wood-decay fungi isolated, Naematoloma sp. (N. capnoides or N. fasciculare), which causes a white rot, was associated with the most decay. Fomes pinicola was mainly responsible for brown cubical sap rot, while Poria monticola and P. carbonica caused a brown cubical heart rot at the ends of logs.The significance of variations in deterioration rate and fungal associates is discussed in relation to log durability and salvability.

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