scholarly journals Mutualistic acacia-ants show that specialized bacteria are not required for the evolution of herbivory

2017 ◽  
Author(s):  
Benjamin E.R. Rubin ◽  
Stefanie Kautz ◽  
Brian D. Wray ◽  
Corrie S. Moreau
Keyword(s):  
Bacterial Communities ◽  
Trophic Position ◽  
Isotope Analysis ◽  
Acetic Acid Bacteria ◽  
Animal Nutrition ◽  
Metagenomic Sequencing ◽  
Nitrogen Recycling ◽  
Associated Bacteria ◽  
Bacterial Endosymbionts ◽  
Acacia Ants

AbstractAcacia-ant mutualists in the genus Pseudomyrmex nest obligately in acacia plants and, through stable isotope analysis, we show that they are among the strictest of herbivores, feeding exclusively from their hosts. The diets of herbivorous insects such as these are often enriched by obligate bacterial endosymbionts through nitrogen recycling and even gaseous di-nitrogen fixation. We, therefore, examine the bacterial communities associated with mutualistic acacia-ants, comparing them with related non-mutualists in order to determine whether they host bacterial partners likely to contribute to the enrichment of their diets. However, despite their low trophic position, we find no evidence for bacteria-assisted nutrition in either adults or larvae. These acacia-ants do not host any species- or clade-specific bacteria, though several lineages of acetic acid bacteria present across social insects do differ in abundance between mutualists and non-mutualists, likely in response to the sugar-rich diets of their hosts. In addition, two novel lineages of Actinomycetales inhabit both mutualistic and non-mutualistic Pseudomyrmex and differ in abundance between the juveniles of these groups, potentially serving as defensive symbionts. Metagenomic sequencing of these taxa reveal substantial capacity for the production of defensive chemicals. Overall, we find little evidence for nutrition-associated bacteria in these strictly herbivorous ants, showing that bacteria are not as essential to animal nutrition as is often hypothesized.

scholarly journals Gut microbiome is affected by inter-sexual and inter-seasonal variation in diet for thick-billed murres (Uria lomvia)

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Esteban Góngora ◽  
Kyle H. Elliott ◽  
Lyle Whyte
Keyword(s):  
Gut Microbiome ◽  
Sulfur Isotopes ◽  
Trophic Position ◽  
Isotope Analysis ◽  
16S Rrna Gene Sequencing ◽  
Rrna Gene ◽  
Uria Lomvia ◽  
Fecal Microbiome ◽  
Prey Specialization ◽  
Rrna Gene Sequencing

AbstractThe role of the gut microbiome is increasingly being recognized by health scientists and veterinarians, yet its role in wild animals remains understudied. Variations in the gut microbiome could be the result of differential diets among individuals, such as variation between sexes, across seasons, or across reproductive stages. We evaluated the hypothesis that diet alters the avian gut microbiome using stable isotope analysis (SIA) and 16S rRNA gene sequencing. We present the first description of the thick-billed murre (Uria lomvia) fecal microbiome. The murre microbiome was dominated by bacteria from the genus Catellicoccus, ubiquitous in the guts of many seabirds. Microbiome variation was explained by murre diet in terms of proportion of littoral carbon, trophic position, and sulfur isotopes, especially for the classes Actinobacteria, Bacilli, Bacteroidia, Clostridia, Alphaproteobacteria, and Gammaproteobacteria. We also observed differences in the abundance of bacterial genera such as Catellicoccus and Cetobacterium between sexes and reproductive stages. These results are in accordance with behavioural observations of changes in diet between sexes and across the reproductive season. We concluded that the observed variation in the gut microbiome may be caused by individual prey specialization and may also be reinforced by sexual and reproductive stage differences in diet.

scholarly journals Sponge-Associated Bacteria Are Strictly Maintained in Two Closely Related but Geographically Distant Sponge Hosts

2011 ◽  
Vol 77 (20) ◽  
pp. 7207-7216 ◽  
Author(s):  
Naomi F. Montalvo ◽  
Russell T. Hill
Keyword(s):  
16S Rrna ◽  
16S Rrna Gene ◽  
Bacterial Communities ◽  
Sponge Species ◽  
Rrna Gene ◽  
Gene Sequences ◽  
Associated Bacteria ◽  
Content Type ◽  
Key Species ◽  
Sponge Associated Bacteria

ABSTRACTThe giant barrel spongesXestospongiamutaandXestospongiatestudinariaare ubiquitous in tropical reefs of the Atlantic and Pacific Oceans, respectively. They are key species in their respective environments and are hosts to diverse assemblages of bacteria. These two closely related sponges from different oceans provide a unique opportunity to examine the evolution of sponge-associated bacterial communities. Mitochondrial cytochrome oxidase subunit I gene sequences fromX.mutaandX.testudinariashowed little divergence between the two species. A detailed analysis of the bacterial communities associated with these sponges, comprising over 900 full-length 16S rRNA gene sequences, revealed remarkable similarity in the bacterial communities of the two species. Both sponge-associated communities include sequences found only in the twoXestospongiaspecies, as well as sequences found also in other sponge species and are dominated by three bacterial groups,Chloroflexi,Acidobacteria, andActinobacteria. While these groups consistently dominate the bacterial communities revealed by 16S rRNA gene-based analysis of sponge-associated bacteria, the depth of sequencing undertaken in this study revealed clades of bacteria specifically associated with each of the twoXestospongiaspecies, and also with the genusXestospongia, that have not been found associated with other sponge species or other ecosystems. This study, comparing the bacterial communities associated with closely related but geographically distant sponge hosts, gives new insight into the intimate relationships between marine sponges and some of their bacterial symbionts.

scholarly journals Abiotic Stresses Shift Belowground Populus-Associated Bacteria Toward a Core Stress Microbiome

mSystems ◽  
2018 ◽  
Vol 3 (1) ◽  
Author(s):  
Collin M. Timm ◽  
Kelsey R. Carter ◽  
Alyssa A. Carrell ◽  
Se-Ran Jun ◽  
Sara S. Jawdy ◽  
...  
Keyword(s):  
Plant Growth ◽  
Environmental Conditions ◽  
Bacterial Communities ◽  
Abiotic Stresses ◽  
Growth Conditions ◽  
Plant Host ◽  
Associated Bacteria ◽  
Poplar Trees

The identification of a common “stress microbiome” indicates tightly controlled relationships between the plant host and bacterial associates and a conserved structure in bacterial communities associated with poplar trees under different growth conditions. The ability of the microbiome to buffer the plant from extreme environmental conditions coupled with the conserved stress microbiome observed in this study suggests an opportunity for future efforts aimed at predictably modulating the microbiome to optimize plant growth.

scholarly journals Plant Growth Promotion Potential Is Equally Represented in Diverse Grapevine Root-Associated Bacterial Communities from Different Biopedoclimatic Environments

2013 ◽  
Vol 2013 ◽  
pp. 1-17 ◽  
Author(s):  
Ramona Marasco ◽  
Eleonora Rolli ◽  
Marco Fusi ◽  
Ameur Cherif ◽  
Ayman Abou-Hadid ◽  
...  
Keyword(s):  
Environmental Factors ◽  
Plant Growth ◽  
Bacterial Communities ◽  
Growth Promotion ◽  
Rrna Gene ◽  
Similar Distribution ◽  
Bacterial Assemblage ◽  
Pgp Traits ◽  
Associated Bacteria

Plant-associated bacteria provide important services to host plants. Environmental factors such as cultivar type and pedoclimatic conditions contribute to shape their diversity. However, whether these environmental factors may influence the plant growth promoting (PGP) potential of the root-associated bacteria is not widely understood. To address this issue, the diversity and PGP potential of the bacterial assemblage associated with the grapevine root system of different cultivars in three Mediterranean environments along a macrotransect identifying an aridity gradient were assessed by culture-dependent and independent approaches. According to 16S rRNA gene PCR-DGGE, the structure of endosphere and rhizosphere bacterial communities was highly diverse (P=0.03) and was associated with a cultivar/latitudinal/climatic effect. Despite being diverse, the bacterial communities associated with Egyptian grapevines shared a higher similarity with the Tunisian grapevines than those cultivated in North Italy. A similar distribution, according to the cultivar/latitude/aridity gradients, was observed for the cultivable bacteria. Many isolates (23%) presentedin vitromultiple stress resistance capabilities and PGP activities, the most frequent being auxin synthesis (82%), insoluble phosphate solubilisation (61%), and ammonia production (70%). The comparable numbers and types of potential PGP traits among the three different environmental settings indicate a strong functional homeostasis of beneficial bacteria associated with grape root.

Trophic ecology of the chihuil sea catfish (Bagre panamensis) in the south-east Gulf of California, México

2017 ◽  
Vol 98 (4) ◽  
pp. 885-893 ◽  
Author(s):  
Víctor M. Muro-Torres ◽  
Felipe Amezcua ◽  
Raul E. Lara-Mendoza ◽  
John T. Buszkiewicz ◽  
Felipe Amezcua-Linares
Keyword(s):  
Gulf Of California ◽  
Trophic Ecology ◽  
Trophic Position ◽  
Feeding Habits ◽  
Isotope Analysis ◽  
Demersal Fish ◽  
Trophic Levels ◽  
High Plasticity ◽  
Combined Use ◽  
Ecosystem Based Fisheries Management

The trophic ecology of the chihuil sea catfish Bagre panamensis was studied through high-resolution variations in its feeding habits and trophic position (TP) in the SE Gulf of California, relevant to sex, size and season. The combined use of stomach content (SCA) and stable isotope analysis (SIA) allowed us to perform these analyses and also estimate the TP of its preys. Results of this study show that the chihuil sea catfish is a generalist and opportunistic omnivore predator that consumes primarily demersal fish and peneid shrimps. Its diet did not vary with climatic season (rainy or dry), size or sex. Results from the SIA indicated high plasticity in habitat use and prey species. The estimated TP value was 4.19, which indicates a tertiary consumer from the soft bottom demersal community in the SE Gulf of California, preying on lower trophic levels, which aids in understanding the species' trophic role in the food web. Because this species and its prey are important to artisanal and industrial fisheries in the Gulf of California, diet assimilation information is useful for the potential establishment of an ecosystem-based fisheries management in the area.

Investigating the diet of the omnivorous mirid Dicyphus hesperus using stable isotopes

2009 ◽  
Vol 99 (4) ◽  
pp. 347-358 ◽  
Author(s):  
J.A. Bennett ◽  
D.R. Gillespie ◽  
S.L. VanLaerhoven
Keyword(s):  
Nitrogen Isotopes ◽  
Trophic Position ◽  
Isotope Analysis ◽  
Isotopic Signature ◽  
Encarsia Formosa ◽  
Verbascum Thapsus ◽  
Diet Variability ◽  
Feeding Trials ◽  
Plant Sources ◽  
Over Time

AbstractOmnivory involves numerous feeding relationships and a complex web of interactions. When using omnivores in biocontrol, these interactions need to be understood to maximize feeding on the target species and minimize non-target interactions. Dicyphus hesperus is used along with Encarsia formosa for biocontrol of whiteflies in greenhouse tomato crops. Dicyphus hesperus is a generalist omnivore which feeds on all components of the system. To quantify these interactions, stable isotope analysis was used to identify trophic position with nitrogen isotopes (δ15N) and plant sources with carbon isotopes (δ13C). Feeding trials were used to establish baseline isotopic data for D. hesperus and their diet, including Verbascum thapsus, an alternative plant food. Cage trials were used to monitor population abundances and the isotopic signature of D. hesperus. In feeding trials, D. hesperus were enriched relative to their food, suggesting an elevated trophic position. However, large amounts of isotopic variation were found within all diet components, with only V. thapsus exhibiting a distinct signature. In cage trials, the average δ15N and δ13C of the omnivore declined over time, coinciding with declines in total available prey, though it may be confounded by changes in temperature. The range of δ13C, but not the range of δ15N, also declined over time. This suggests a change in the plant source within the diet, but also some unquantified variability within the population. We suggest that diet variability exists within D. hesperus populations, declining as prey become less abundant.

Trophic relationships of breeding Red-necked Grebes (Podiceps grisegena) on wetlands with and without fish in the Aspen Parkland

2010 ◽  
Vol 88 (2) ◽  
pp. 186-194 ◽  
Author(s):  
C. E. McParland ◽  
C. A. Paszkowski ◽  
J. L. Newbrey
Keyword(s):  
Egg Production ◽  
Trophic Position ◽  
Isotope Analysis ◽  
Trophic Levels ◽  
Trophic Relationships ◽  
Breeding Sites ◽  
Top Predators ◽  
Aspen Parkland ◽  
Wintering Areas ◽  
Podiceps Grisegena

Dietary overlap between waterbirds and fish in many freshwater systems can lead to competition for food resources and changes in the trophic position of top predators. We used stable isotope analysis of carbon and nitrogen from egg tissues to document differences in the trophic position of breeding Red-necked Grebes ( Podiceps grisegena (Boddaert, 1783)) on wetlands with and without fish in the Aspen Parkland of Alberta, Canada. Grebes occupied higher trophic levels in the presence of fish than in their absence, suggesting that small-bodied fish in Aspen Parkland food webs may lengthen food chains in which grebes are top predators. A mixed diet of invertebrates and fishes may be adaptive for grebes in this highly variable ecosystem where fish colonize wetlands in wet years and are extirpated in dry years. Carbon analyses indicated that female grebes likely obtained resources for egg production from breeding sites and not from wintering areas, as eggs had similar δ13C values to wetland primary producers, invertebrates, and fishes.

scholarly journals Body size is negatively correlated with trophic position among cyprinids

2016 ◽  
Vol 3 (5) ◽  
pp. 150652 ◽  
Author(s):  
Edward D. Burress ◽  
Jordan M. Holcomb ◽  
Karine Orlandi Bonato ◽  
Jonathan W. Armbruster
Keyword(s):  
Body Size ◽  
Trophic Position ◽  
Isotope Analysis ◽  
Negative Relationship ◽  
Species Traits ◽  
Food Web Structure ◽  
Mechanical Constraints ◽  
Web Structure ◽  
Significant Negative Relationship ◽  
Multiple Levels

Body size has many ecological and evolutionary implications that extend across multiple levels of organization. Body size is often positively correlated with species traits such as metabolism, prey size and trophic position (TP) due to physiological and mechanical constraints. We used stable isotope analysis to quantify TP among minnows across multiple assemblages that differed in their species composition, diversity and food web structure. Body size significantly predicted TP across different lineages and assemblages, and indicated a significant negative relationship. The observed negative relationship between body size and TP is contrary to conventional knowledge, and is likely to have arisen owing to highly clade-specific patterns, such that clades consist of either large benthic species or small pelagic species. Cyprinids probably subvert the physiological and mechanical constraints that generally produce a positive relationship between body size and TP using anatomical modifications and by consuming small-bodied prey, respectively. The need for herbivorous cyprinids to digest cellulose-rich foods probably selected for larger bodies to accommodate longer intestinal tracts and thereby to facilitate digestion of nutrient-poor resources, such as algae. Therefore, body size and TP are likely to have coevolved in cyprinids in association with specialization along the benthic to pelagic resource axis.

Bacterial community structure at defined locations ofPinus sylvestris-Suillus bovinusandPinus sylvestris-Paxillus involutusmycorrhizospheres in dry pine forest humus and nursery peat

1998 ◽  
Vol 44 (6) ◽  
pp. 499-513 ◽  
Author(s):  
Sari Timonen ◽  
Kirsten S Jørgensen ◽  
Kielo Haahtela ◽  
Robin Sen
Keyword(s):  
Carbon Source ◽  
Pinus Sylvestris ◽  
Bacterial Communities ◽  
Bacterial Species ◽  
Pine Forest ◽  
Paxillus Involutus ◽  
Carbon Source Utilization ◽  
Associated Bacteria ◽  
Suillus Bovinus ◽  
Forest Humus

Bacteria were isolated and characterized from uncolonized soil, nonmycorrhizal and mycorrhizal short roots, and soil-colonizing external mycelium from intact Pinus sylvestris - Suillus bovinus and Pinus sylvestris - Paxillus involutus mycorrhizospheres developed in microcosms containing dry pine forest humus or nursery peat. Total numbers of colony-forming units (CFU/mg dry weight) in the different locations from all ectomycorrhizospheres indicated an overall bacterial-enrichment gradient towards the roots, whereas sporeformers were more evenly distributed. Fluorescent pseudomonads were commonly isolated from all mycorrhizosphere locations in nursery peat, but they were nearly absent from the forest humus community. In contrast, sporeformers were more abundant at all locations in the latter growth substrate. The bacterial species composition of forest and nursery mycorrhizospheres was clearly divergent when characterized according to their carbon source utilization patterns in Biolog®GN or GP microplates. Factorial-designed ANOVA of a principal component analysis of the carbon source utilization data showed significant differences between isolates from the two soil types and, to a lesser extent, between S. bovinus and Paxillus involutus mycorrhizospheres. Bacterial communities from mycorrhizospheres and uncolonized soil were distinguished by their preferential utilization of carbohydrates and organic and amino acids, respectively. Suillus bovinus associated bacteria appeared to favour mannitol and Paxillus involutus associated bacteria appeared to favour fructose as carbon sources. This study demonstrates the combined effect of soil type, fungal symbiont, and precise location on bacterial communities associated with Pinus sylvestris ectomycorrhizospheres.Key words: Biolog, carbon source utilization, ectomycorrhiza, Scots pine, soil bacteria.

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