scholarly journals Decomposing the causes for niche differentiation between species using hypervolumes

2018 ◽  
Author(s):  
Jose Carlos Carvalho ◽  
Pedro Cardoso
Keyword(s):  
Community Assembly ◽  
Niche Partitioning ◽  
Niche Differentiation ◽  
Niche Shift ◽  
Niche Space ◽  
Niche Dynamics ◽  
Niche Shifts ◽  
Coexisting Species ◽  
Reduced Space ◽  
Niche Displacement

Hutchinson's n-dimensional hypervolume concept holds a central role across different fields of ecology and evolution. The question of the amount of hypervolume overlap and differentiation between species is of great interest to understand the processes that drive niche dynamics, competitive interactions and, ultimately, community assembly. A novel framework is proposed to decompose overall differentiation among hypervolumes into two distinct components: niche shifts and niche contraction / expansion processes. Niche shift corresponds to the replacement of space between the hypervolumes occupied by two species, whereas niche contraction / expansion processes correspond to net differences between the amount of space enclosed by each hypervolume. Hypervolumes were constructed for two Darwin' finches, Geospiza conirostris and Geospiza magnirostris, using intraspecific trait data from Genovesa Island, where they live in sympatry. Results showed that significant niche shifts, not niche contraction, occurred between these species. This means that Geospiza conirostris occupied a different niche space and not a reduced space on Genovesa. The proposed framework allows disentangling different processes and understand the drivers of niche partitioning between coexisting species. Niche displacement due to competition can this way be separated from niche contraction due to specialization or expansion due to lower pressure on newly occupied ecological settings.

scholarly journals Invasion but not hybridisation is associated with ecological niche shift in monkeyflowers

2019 ◽  
Author(s):  
Daniele Da Re ◽  
Angel P. Olivares ◽  
William Smith ◽  
Mario Vallejo-Marín
Keyword(s):  
New Zealand ◽  
Ecological Niche ◽  
Secondary Contact ◽  
Niche Shift ◽  
Ecological Niches ◽  
Introduced Populations ◽  
Niche Dynamics ◽  
Introduced Range ◽  
Niche Shifts ◽  
Native And Introduced Ranges

AbstractBackgroundThe ecological niche occupied by novel hybrids can influence their establishment as well as the potential to coexist with their parents. Hybridisation generates new phenotypic combinations, which, in some cases, may allow them to occupy ecological niches outside the environmental envelope of parental taxa. In other cases, hybrids may retain similar ecological niches to their parents, resulting in competition and affecting their coexistence. To date, few studies have quantitatively assessed niche shifts associated with hybridisation in recently introduced populations while simultaneously characterising the niche of parental species in both native and introduced ranges.AimsIn this study, we compared the ecological niche of a novel hybrid plant with the niches of its two parental taxa in the non-native geographic range. We also characterised and compared the parental taxa’s ecological niche of native and introduced populations in order to assess potential niche changes during the invasion process independent of hybridisation.MethodsWe studied monkeyflowers (Mimulus spp., Phrymaceae) that were introduced from the Americas to Europe and New Zealand in the last 200 years. We focused on a novel hybrid, triploid, asexual taxon (M. × robertsii) that occurs only in the British Isles where its two parents (M. guttatus and M. luteus) come into secondary contact. We assembled more than 12,000 geo-referenced occurrence records and eight environmental variables of the three taxa across native and introduced ranges, and conducted ecological niche model analysis using maximum entropy, principal component and niche dynamics analysis.ResultsWe found no evidence of niche shift in the hybrid, M. × robertsii compared to introduced populations of both of their parental taxa. The hybrid had a niche more similar to M. luteus, which is also the rarest of the parental taxa on the introduced range. Among parental monkeyflowers, M. guttatus showed niche conservatism in introduced populations in Europe, but a niche shift in New Zealand, while M. luteus showed a niche shift in Europe. However, the evidence of niche shift should be treated with caution due to the occurence of non-analog climatic conditions, small population size and unfilling niche dynamics.ConclusionsOur results suggest that hybridisation in non-native monkyeflowers did not result in a shift in ecological niche. This niche conservation could create competition between parental and derived taxa, the outcome of which will depend on relative competitive abilities. Further work is needed to establish if the expansion of the hybrid in the introduced range is causally related to the apparent rarity of one of the parents (M.luteus). Finally, the comparison of native and non-native populations of parental taxa, suggest that whether invasions result in niche shifts or not depends on both taxon and geographic region, highlighting the idiosyncratic nature of biological invasions.

scholarly journals Allopatric distribution and diversification without niche shift in a bryophyte-feeding basal moth lineage (Lepidoptera: Micropterigidae)

2011 ◽  
Vol 278 (1721) ◽  
pp. 3026-3033 ◽  
Author(s):  
Yume Imada ◽  
Atsushi Kawakita ◽  
Makoto Kato
Keyword(s):  
Phylogenetic Analysis ◽  
Niche Differentiation ◽  
Ecological Speciation ◽  
Niche Shift ◽  
Conocephalum Conicum ◽  
Plant Feeding ◽  
Niche Shifts ◽  
Molecular Phylogenetic ◽  
Evolutionary Success ◽  
The Japanese Archipelago

The Lepidoptera represent one of the most successful radiations of plant-feeding insects, which predominantly took place within angiosperms beginning in the Cretaceous period. Angiosperm colonization is thought to underlie the evolutionary success of the Lepidoptera because angiosperms provide an enormous range of niches for ecological speciation to take place. By contrast, the basal lepidopteran lineage, Micropterigidae, remained unassociated with angiosperms since Jurassic times but nevertheless achieved a modest diversity in the Japanese Archipelago. We explored the causes and processes of diversification of the Japanese micropterigid moths by performing molecular phylogenetic analysis and extensive ecological surveying. Phylogenetic analysis recovered a monophyletic group of approximately 25 East Asian endemic species that feed exclusively on the liverwort Conocephalum conicum , suggesting that niche shifts hardly played a role in their diversification. Consistent with the low flying ability of micropterigid moths, the distributions of the Conocephalum specialists are each localized and allopatric, indicating that speciation by geographical isolation has been the major process shaping the diversity of Japanese Micropterigidae. To our knowledge, this is the largest radiation of herbivorous insects that does not accompany any apparent niche differentiation. We suggest that the significance of non-ecological speciation during the diversification of the Lepidoptera is commonly underestimated.

scholarly journals An ecological niche shift for Neanderthal populations in Western Europe 70,000 years ago

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
William E. Banks ◽  
Marie-Hélène Moncel ◽  
Jean-Paul Raynal ◽  
Marlon E. Cobos ◽  
Daniel Romero-Alvarez ◽  
...  
Keyword(s):  
Material Culture ◽  
Ecological Niche ◽  
Western Europe ◽  
Ecological Niche Modeling ◽  
Climatic Variability ◽  
Niche Shift ◽  
Ecological Niches ◽  
Middle Paleolithic ◽  
Niche Dynamics ◽  
Anatomically Modern Humans

AbstractMiddle Paleolithic Neanderthal populations occupied Eurasia for at least 250,000 years prior to the arrival of anatomically modern humans. While a considerable body of archaeological research has focused on Neanderthal material culture and subsistence strategies, little attention has been paid to the relationship between regionally specific cultural trajectories and their associated existing fundamental ecological niches, nor to how the latter varied across periods of climatic variability. We examine the Middle Paleolithic archaeological record of a naturally constrained region of Western Europe between 82,000 and 60,000 years ago using ecological niche modeling methods. Evaluations of ecological niche estimations, in both geographic and environmental dimensions, indicate that 70,000 years ago the range of suitable habitats exploited by these Neanderthal populations contracted and shifted. These ecological niche dynamics are the result of groups continuing to occupy habitual territories that were characterized by new environmental conditions during Marine Isotope Stage 4. The development of original cultural adaptations permitted this territorial stability.

scholarly journals Foraging niche partitioning in sympatric seabird populations

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Christina Petalas ◽  
Thomas Lazarus ◽  
Raphael A. Lavoie ◽  
Kyle H. Elliott ◽  
Mélanie F. Guigueno
Keyword(s):  
Interspecific Competition ◽  
Niche Partitioning ◽  
Niche Differentiation ◽  
Sympatric Species ◽  
Foraging Strategies ◽  
Gps Tracking ◽  
Seabird Species ◽  
Foraging Range ◽  
Common Murre ◽  
Prey Items

AbstractSympatric species must sufficiently differentiate aspects of their ecological niche to alleviate complete interspecific competition and stably coexist within the same area. Seabirds provide a unique opportunity to understand patterns of niche segregation among coexisting species because they form large multi-species colonies of breeding aggregations with seemingly overlapping diets and foraging areas. Recent biologging tools have revealed that colonial seabirds can differentiate components of their foraging strategies. Specifically, small, diving birds with high wing-loading may have small foraging radii compared with larger or non-diving birds. In the Gulf of St-Lawrence in Canada, we investigated whether and how niche differentiation occurs in four incubating seabird species breeding sympatrically using GPS-tracking and direct field observations of prey items carried by adults to chicks: the Atlantic puffin (Fratercula arctica), razorbill (Alca torda), common murre (Uria aalge), and black-legged kittiwake (Rissa tridactyla). Although there was overlap at foraging hotspots, all species differentiated in either diet (prey species, size and number) or foraging range. Whereas puffins and razorbills consumed multiple smaller prey items that were readily available closer to the colony, murres selected larger more diverse prey that were accessible due to their deeper diving capability. Kittiwakes compensated for their surface foraging by having a large foraging range, including foraging largely at a specific distant hotspot. These foraging habitat specialisations may alleviate high interspecific competition allowing for their coexistence, providing insight on multispecies colonial living.

scholarly journals Niche partitioning by photosynthetic plankton as a driver of CO2-fixation across the oligotrophic South Pacific Subtropical Ocean

2021 ◽  
Author(s):  
Julia Duerschlag ◽  
Wiebke Mohr ◽  
Timothy G. Ferdelman ◽  
Julie LaRoche ◽  
Dhwani Desai ◽  
...  
Keyword(s):  
Mixed Layer ◽  
Niche Partitioning ◽  
Euphotic Zone ◽  
South Pacific ◽  
Niche Differentiation ◽  
Surface Mixed Layer ◽  
The South ◽  
The Core ◽  
Photosynthetic Eukaryotes ◽  
Phytoplankton Communities

AbstractOligotrophic ocean gyre ecosystems may be expanding due to rising global temperatures [1–5]. Models predicting carbon flow through these changing ecosystems require accurate descriptions of phytoplankton communities and their metabolic activities [6]. We therefore measured distributions and activities of cyanobacteria and small photosynthetic eukaryotes throughout the euphotic zone on a zonal transect through the South Pacific Ocean, focusing on the ultraoligotrophic waters of the South Pacific Gyre (SPG). Bulk rates of CO2 fixation were low (0.1 µmol C l−1 d−1) but pervasive throughout both the surface mixed-layer (upper 150 m), as well as the deep chlorophyll a maximum of the core SPG. Chloroplast 16S rRNA metabarcoding, and single-cell 13CO2 uptake experiments demonstrated niche differentiation among the small eukaryotes and picocyanobacteria. Prochlorococcus abundances, activity, and growth were more closely associated with the rims of the gyre. Small, fast-growing, photosynthetic eukaryotes, likely related to the Pelagophyceae, characterized the deep chlorophyll a maximum. In contrast, a slower growing population of photosynthetic eukaryotes, likely comprised of Dictyochophyceae and Chrysophyceae, dominated the mixed layer that contributed 65–88% of the areal CO2 fixation within the core SPG. Small photosynthetic eukaryotes may thus play an underappreciated role in CO2 fixation in the surface mixed-layer waters of ultraoligotrophic ecosystems.

scholarly journals Global cultivation of wheat crops induces considerable shifts in the range and niche of species relative to their wild progenitors

2021 ◽  
Author(s):  
Rujing Yang ◽  
Xiang Gong ◽  
Xiaokang Hu ◽  
Yawen Hu ◽  
Jianmeng Feng
Keyword(s):  
Dynamic Models ◽  
Distribution Patterns ◽  
Potential Range ◽  
Ecological Niche Models ◽  
Crop Species ◽  
Crop Cultivation ◽  
Niche Dynamics ◽  
Wheat Cultivation ◽  
Niche Shifts ◽  
Wild Progenitors

Abstract Species’ range and niche play key roles in understanding ecological and biogeographical patterns, especially in projecting global biotic homogenization and potential distribution patterns of species under global change scenarios. However, few studies have investigated the ability of crop cultivation to influence potential range sizes and niche shifts of species. Wheat and its wild progenitors share the same origin and evolutionary history, and thus provide an excellent system to explore this topic. Using ensembled ecological niche models and niche dynamic models, we studied the potential range sizes of wheat and its wild progenitors, as well as their niche dynamics. Our results showed that wheat had larger range size and niche breadth than its wild progenitors, suggesting that wheat cultivation is a more powerful driver of range and niche expansion than natural niche evolution. Additionally, wheat and its wild progenitors occupied different niche positions, and the former did not conserve the niches inherited from the latter, implying that wheat cultivation considerably induces niche shifts. The niche dynamics between wheat and its wild progenitors were not only closely associated with cultivation but were also modified by the niche conservatism of its wild progenitors. In contrast to most invasive plants, wheat, as a global staple crop species, did not conserve the niche space inherited from its wild progenitors, suggesting that compared with most plant invasions, cultivation may have a stronger effect on niche shifts. Therefore, global niche shifts induced by crop cultivation need much more attention, though the underlying mechanisms require further study.

Ontogenetic Niche Shifts, Predators, and Coexistence among Consumer Species

2013 ◽  
Author(s):  
André M. de Roos ◽  
Lennart Persson
Keyword(s):  
Alternative Stable States ◽  
Niche Partitioning ◽  
Stage Structure ◽  
Stable States ◽  
Stable Coexistence ◽  
Ontogenetic Niche Shifts ◽  
Niche Shifts ◽  
Ontogenetic Niche ◽  
Dependent Growth ◽  
Equal Population

This chapter considers how stage structure and ontogenetic niche shifts may affect the coexistence between two consumer species competing for two resources in the absence and presence of predators, and how ontogenetic niche shifts may give rise to alternative stable states. More specifically, the analysis will use techniques developed within the consumer-resource framework of Tilman (1982), including consumption and renewal vectors (Schellekens, de Roos, and Persson 2010). Tilman showed that stable coexistence between consumers feeding on the same two resources is possible if each consumer species feeds proportionally more on the resource that limits its own growth most. Stable coexistence is, however, also affected by the form of resource-dependent growth isoclines, which represent combinations of resource densities that lead to equal population growth of consumers. It is shown that ontogenetic niche shifts per se affect the form of resource-dependent growth isoclines, which in turn may lead to coexistence through niche partitioning. The chapter also discusses how predation may promote the performance of a species undergoing ontogenetic niche shifts even in the case where it is both the inferior competitor and the preferred prey of the predator.

Identification of trophic niches of subterranean diving beetles in a calcrete aquifer by DNA and stable isotope analyses

2014 ◽  
Vol 65 (2) ◽  
pp. 95 ◽  
Author(s):  
Tessa M. Bradford ◽  
William F. Humphreys ◽  
Andrew D. Austin ◽  
Steven J. B. Cooper
Keyword(s):  
Stable Isotope ◽  
Trophic Ecology ◽  
Niche Partitioning ◽  
Niche Differentiation ◽  
Trophic Niche ◽  
Coi Gene ◽  
Stable Isotope Analyses ◽  
Prey Preferences ◽  
Diving Beetles ◽  
Isotope Analyses

The Yilgarn calcrete aquifers in Western Australia are an interesting system for investigating the process of speciation within subterranean habitats, because of the limited opportunities for dispersal between isolated calcretes. The presence of different-sized diving beetles (Dytiscidae) in separate calcretes, including sympatric sister-species pairs, suggests that species may have evolved within calcretes by an adaptive shift as a result of ecological-niche differentiation. We have studied the potential for trophic niche partitioning in a sister triplet of diving beetles, of distinctly different sizes, from a single aquifer. Fragments of the mitochondrial COI gene, specific to known species of amphipods and copepods, were polymerase chain reaction-amplified from each of the three beetle species, indicating that there is an overlap in their prey items. Significant differences were found in the detected diets of the three species, and results showed a propensity for prey preferences of amphipods by the large beetles and one species of copepod for the small beetles. A terrestrial source of carbon to the calcrete was suggested by stable isotope analyses. The combined approach of molecular, stable isotope and behavioural studies have provided insight into the trophic ecology of this difficult-to-access environment, providing a framework for more fine-scale analyses of the diet of different-sized species to examine speciation underground.

scholarly journals Seasonal niche differentiation between evolutionary closely related marine bacteria

2020 ◽  
Author(s):  
Adrià Auladell ◽  
Albert Barberán ◽  
Ramiro Logares ◽  
Esther Garcés ◽  
Josep M. Gasol ◽  
...  
Keyword(s):  
Marine Bacteria ◽  
Niche Partitioning ◽  
Environmental Parameters ◽  
Niche Overlap ◽  
Niche Differentiation ◽  
Habitat Filtering ◽  
Coastal Marine ◽  
Class Level ◽  
Nucleotide Divergence ◽  
Selection Of

AbstractBacteria are highly dynamic in marine environments, where they play key biogeochemical roles. Here, we tested how similar the niche of closely related marine bacteria is and what are the environmental parameters modulating their ecological responses in a coastal oligotrophic time series. We further explored how conserved the niche is at broader taxonomic levels. We found that, for certain genera, niche similarity decreases as nucleotide divergence increases between closely related amplicon sequence variants, a pattern compatible with selection of similar taxa through habitat filtering. Additionally, we observed evidence of niche partitioning within various genera shown by the distinct seasonal patterns of closely related taxa. At broader levels, we did not observe coherent seasonal trends at the class level, with the order and family ranks conditioned to the patterns that exist at the genus level. This study explores the coexistence of niche overlap and niche partitioning in a coastal marine environment.

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