scholarly journals Composition of estuarine sediment microbiome from a chronosequence of restored urban salt marshes

2019 ◽  
Author(s):  
Nathan Morris ◽  
Mary Alldred ◽  
Chester Zarnoch ◽  
Elizabeth Alter
Keyword(s):  
Salt Marsh ◽  
Salt Marshes ◽  
Bacterial Communities ◽  
East Coast ◽  
Taxonomic Composition ◽  
Nutrient Cycle ◽  
Metabolic Capacity ◽  
Anthropogenic Stressors ◽  
Jamaica Bay ◽  
Restoration Chronosequence

ABSTRACTSalt marshes play an important role in the global nutrient cycle. The sediments in these systems harbor diverse and complex bacterial communities possessing metabolic capacities that provide ecosystem services such as nutrient cycling and removal. On the East Coast of the United States, salt marshes have been experiencing degradation due to anthropogenic stressors. Salt marsh islands within Jamaica Bay, New York City (USA), are surrounded by a large highly urbanized watershed and have declined in area. Restoration efforts have been enacted to reduce further loss, but little is known about how microbial communities develop following restoration activities, or how processes such as nitrogen cycling are impacted. Sediment samples were collected at two sampling depths from five salt marsh islands to characterize the bacterial communities found in marsh sediment including a post-restoration chronosequence of 3-12 years. We used 16s rRNA amplicon sequencing to define alpha and beta diversity, taxonomic composition, and predicted metabolic profile of each sediment sample. We found significant differences in alpha diversity between sampling depths, and significant differences in beta diversity, taxonomic composition, and predicted metabolic capacity among the five sampling locations. The youngest restored site and the degraded natural sampling site exhibited the most distinct communities among the five sites. Our findings suggest that while the salt marsh islands are located in close proximity to each other, they harbor distinct bacterial communities that can be correlated with the post-restoration age, marsh health, and other environmental factors such as availability of organic carbon.IMPORTANCESalt marshes play a critical role in the global nutrient cycle due to sediment bacteria and their metabolic capacities. Many East Coast salt marshes have experienced significant degradation over recent decades, thought largely to be due to anthropogenic stressors such as nitrogen loading, urban development, and sea-level rise. Salt marsh islands in Jamaica Bay (Queens/Brooklyn NY) are exposed to high water column nitrogen due to wastewater effluent. Several receding marsh islands have been subjected to restoration efforts to mitigate this loss. Little is known about the effect marsh restoration has on bacterial communities, their metabolic capacity, or how they develop post-restoration. Here we describe the bacterial communities found in marsh islands including a post-restoration chronosequence of 3-12 years and one degraded marsh island that remains unrestored.

scholarly journals Topological and Morphological Controls on Morphodynamics of Salt Marsh Interiors

2021 ◽  
Vol 9 (3) ◽  
pp. 311
Author(s):  
Ben R. Evans ◽  
Iris Möller ◽  
Tom Spencer
Keyword(s):  
Salt Marsh ◽  
Salt Marshes ◽  
East Coast ◽  
Marsh Surface ◽  
Coastal Environments ◽  
Coastal System ◽  
Morphological Segmentation ◽  
The Usa ◽  
The Uk ◽  
Over Time

Salt marshes are important coastal environments and provide multiple benefits to society. They are considered to be declining in extent globally, including on the UK east coast. The dynamics and characteristics of interior parts of salt marsh systems are spatially variable and can fundamentally affect biotic distributions and the way in which the landscape delivers ecosystem services. It is therefore important to understand, and be able to predict, how these landscape configurations may evolve over time and where the greatest dynamism will occur. This study estimates morphodynamic changes in salt marsh areas for a regional domain over a multi-decadal timescale. We demonstrate at a landscape scale that relationships exist between the topology and morphology of a salt marsh and changes in its condition over time. We present an inherently scalable satellite-derived measure of change in marsh platform integrity that allows the monitoring of changes in marsh condition. We then demonstrate that easily derived geospatial and morphometric parameters can be used to determine the probability of marsh degradation. We draw comparisons with previous work conducted on the east coast of the USA, finding differences in marsh responses according to their position within the wider coastal system between the two regions, but relatively consistent in relation to the within-marsh situation. We describe the sub-pixel-scale marsh morphometry using a morphological segmentation algorithm applied to 25 cm-resolution maps of vegetated marsh surface. We also find strong relationships between morphometric indices and change in marsh platform integrity which allow for the inference of past dynamism but also suggest that current morphology may be predictive of future change. We thus provide insight into the factors governing marsh degradation that will assist the anticipation of adverse changes to the attributes and functions of these critical coastal environments and inform ongoing ecogeomorphic modelling developments.

Fungi on Juncus roemerianus. 8. New bitunicate ascomycetes

1996 ◽  
Vol 74 (11) ◽  
pp. 1830-1840 ◽  
Author(s):  
Jan Kohlmeyer ◽  
Brigitte Volkmann-Kohlmeyer ◽  
Ove E. Eriksson
Keyword(s):  
United States ◽  
Salt Marsh ◽  
Salt Marshes ◽  
New Genus ◽  
East Coast ◽  
The United States ◽  
The Other ◽  
Juncus Roemerianus

Heleiosa barbatula gen. et sp.nov., Massariosphaeria erucacea sp.nov., and Scirrhia annulata sp.nov. are described from Juncus roemerianus in salt marshes of the United States east coast. Whereas H. barbatula is very rare, the other two species do not show a seasonality because they occurred in almost every one of the monthly collections made throughout 2 years. The new genus Heleiosa is of unknown affinity but may belong to Dothideales s.l. Keywords: ascomycetes, Heleiosa, Juncus, Massariosphaeria, salt marsh, Scirrhia.

scholarly journals Ship Wakes and Their Potential Impacts on Salt Marshes in Jamaica Bay, New York

2020 ◽  
Vol 8 (5) ◽  
pp. 325
Author(s):  
Hoda El Safty ◽  
Reza Marsooli
Keyword(s):  
New York ◽  
Salt Marsh ◽  
Salt Marshes ◽  
Morphological Changes ◽  
Wind Waves ◽  
Sediment Supply ◽  
Aerial Photographs ◽  
Ship Wake ◽  
Jamaica Bay ◽  
Ship Wakes

Aerial photographs and field studies have revealed a rapid deterioration of salt marshes in Jamaica Bay, New York. Past studies have linked marsh deterioration to sediment supply, water quality, storms, and sea level rise. Yet ship wakes and their potential impacts on marsh edge erosion are not understood. Here, we study ship wake transformation in Jamaica Bay and their potential impacts on salt marsh erosion. We apply short-time, Fourier transform (spectrogram) on existing water level measurements collected during 2015 and 2016. Our analysis reveals the existence of typical wake components. Among the observed wake components is a long wave component which propagates over shallow areas where short wind waves do not reach. We further implement a phase-resolving wave model to study wake transformation in the vicinity of salt marsh islands Little Egg and Big Egg and the consequent morphological changes. The selected marshes are located near a deep shipping channel and a ferry station, making them exposed to wakes of vessels with different size and sailing speed. A series of numerical experiments show that ship wakes can result in erosion spots near the border of deep shipping channels and their banks, i.e., edges of mudflats and marsh substrates. We show that the cumulative erosion increases rapidly with the number of vessels that pass through the study area. For instance, the magnitude of final bed erosion after the passage of 10 vessels is two to three times larger than that after the passage of five vessels.

Fungi from decomposing Spartina alterniflora

1973 ◽  
Vol 51 (1) ◽  
pp. 51-55 ◽  
Author(s):  
Robert V. Gessner ◽  
R. D. Goos
Keyword(s):  
Salt Marsh ◽  
Rhode Island ◽  
Spartina Alterniflora ◽  
Salt Marshes ◽  
Tidal Creek ◽  
East Coast ◽  
High Tide ◽  
The United States ◽  
Dominant Plant Species

Spartina alterniflora, the dominant plant species of the tidal salt marshes on the east coast of the United States, contributes significantly to estuarine primary productivity. Energy stored by the plant is released through decomposition as detritus or decomposer biomass. The role of fungi in these transformations has not been elucidated and was investigated in the present study. Dried, dead grass was confined in nylon bags, exposed on a salt marsh and in an adjacent tidal creek in southern Rhode Island, and a quantitative and qualitative study made of the fungi found to be associated with the decomposing grass. Twenty-seven species of fungi were isolated. The average number of fungal colonies/g dry wt. of grass was found to be higher in material exposed on the salt marsh and subjected to immersion only at high tide (2436) than from material immersed in an adjacent creek (1021). The grass lost about 50% dry wt. after 6 months of exposure on the marsh.

scholarly journals Divergent Co-occurrence Patterns and Assembly Processes Structure the Abundant and Rare Bacterial Communities in a Salt Marsh Ecosystem

2020 ◽  
Vol 86 (13) ◽  
Author(s):  
Shicong Du ◽  
Francisco Dini-Andreote ◽  
Nan Zhang ◽  
Chunling Liang ◽  
Zhiyuan Yao ◽  
...  
Keyword(s):  
Salt Marsh ◽  
Salt Marshes ◽  
Bacterial Communities ◽  
Species Interaction ◽  
Hangzhou Bay ◽  
Ecological Processes ◽  
Rare Taxa ◽  
Α Diversity ◽  
Occurrence Patterns ◽  
Dynamic Interplay

ABSTRACT Understanding how species interaction and assembly processes structure the abundant and rare bacterial biospheres in soils is crucial for predicting how biodiversity influences ecosystem functioning. Here, we profiled the bacterial communities across a salt marsh ecosystem gradient to investigate the co-occurrence patterns across taxa and the relative influence of ecological processes mediating the assembly of the abundant and rare biospheres in soil. Our results revealed abundant taxa to be ubiquitous across all sites, whereas the distributions of the rare taxa were relatively more site specific. The α-diversity indices and β-diversity of rare subcommunities were significantly higher than those of the abundant subcommunities. Besides, both the taxonomic and functional composition of soil bacterial communities differed significantly between the two biospheres. Furthermore, the influence of stochasticity differed in each subcommunity. In particular, stochastic processes were relatively more important in constraining the assembly of rare taxa. Co-occurrence network analysis revealed that a few abundant taxa occupy central nodes within the networks, possibly indicating crucial roles as keystone taxa. Collectively, these findings suggest that abundant and rare bacterial biospheres have distinct distributions underpinned by a dynamic interplay of ecological processes and taxon co-occurrence patterns. IMPORTANCE Estuarine salt marshes are highly productive ecosystems subjected to regular disturbances by hydrodynamic exchange. However, little is known about how distinct assembly processes and co-occurrence of taxa influence the structure of the abundant and rare bacterial biospheres in these soil systems. This study aims at unravelling these intricacies by studying a typical estuarine salt marsh located in Hangzhou Bay, China. Our study provides important pieces of evidence on the diverse distribution of rare and abundant bacterial biospheres. We show that a few abundant taxa are central nodes in species co-occurrence, potentially playing important roles as keystone species in the system. In addition, we highlight a dynamic interplay of assembly processes structuring these two subcommunities.

Urbanization impacts on production and recruitment of Fundulus heteroclitus in salt marsh creeks

2020 ◽  
Vol 645 ◽  
pp. 187-204
Author(s):  
PJ Rudershausen ◽  
JA Buckel
Keyword(s):  
Salt Marsh ◽  
Salt Marshes ◽  
Fundulus Heteroclitus ◽  
Multiple Factor Analysis ◽  
Southeastern Usa ◽  
Density Dependent ◽  
Dependent Relationship ◽  
Juvenile Abundance ◽  
The Relationship ◽  
Throw Trap

It is unclear how urbanization affects secondary biological production in estuaries in the southeastern USA. We estimated production of larval/juvenile Fundulus heteroclitus in salt marsh areas of North Carolina tidal creeks and tested for factors influencing production. F. heteroclitus were collected with a throw trap in salt marshes of 5 creeks subjected to a range of urbanization intensities. Multiple factor analysis (MFA) was used to reduce dimensionality of habitat and urbanization effects in the creeks and their watersheds. Production was then related to the first 2 dimensions of the MFA, month, and year. Lastly, we determined the relationship between creek-wide larval/juvenile production and abundance from spring and abundance of adults from autumn of the same year. Production in marsh (g m-2 d-1) varied between years and was negatively related to the MFA dimension that indexed salt marsh; higher rates of production were related to creeks with higher percentages of marsh. An asymptotic relationship was found between abundance of adults and creek-wide production of larvae/juveniles and an even stronger density-dependent relationship was found between abundance of adults and creek-wide larval/juvenile abundance. Results demonstrate (1) the ability of F. heteroclitus to maintain production within salt marsh in creeks with a lesser percentage of marsh as long as this habitat is not removed altogether and (2) a density-dependent link between age-0 production/abundance and subsequent adult recruitment. Given the relationship between production and marsh area, natural resource agencies should consider impacts of development on production when permitting construction in the southeastern USA.

scholarly journals Diversity and Dynamics of Seaweed Associated Microbial Communities Inhabiting the Lagoon of Venice

2020 ◽  
Vol 8 (11) ◽  
pp. 1657
Author(s):  
Abdul-Salam Juhmani ◽  
Alessandro Vezzi ◽  
Mohammad Wahsha ◽  
Alessandro Buosi ◽  
Fabio De Pascale ◽  
...  
Keyword(s):  
Microbial Communities ◽  
Bacterial Communities ◽  
Host Response ◽  
Environmental Parameters ◽  
16S Rrna Genes ◽  
Rrna Genes ◽  
Nutrient Concentrations ◽  
Lagoon Of Venice ◽  
Anthropogenic Stressors ◽  
Rich Diversity

Seaweeds are a group of essential photosynthetic organisms that harbor a rich diversity of associated microbial communities with substantial functions related to host health and defense. Environmental and anthropogenic stressors may disrupt the microbial communities and their metabolic activity, leading to host physiological alterations that negatively affect seaweeds’ performance and survival. Here, the bacterial communities associated with one of the most common seaweed, Ulva laetevirens Areshough, were sampled over a year at three sites of the lagoon of Venice affected by different environmental and anthropogenic stressors. Bacterial communities were characterized through Illumina sequencing of the V4 hypervariable region of 16S rRNA genes. The study demonstrated that the seaweed associated bacterial communities at sites impacted by environmental stressors were host-specific and differed significantly from the less affected site. Furthermore, these communities were significantly distinct from those of the surrounding seawater. The bacterial communities’ composition was significantly correlated with environmental parameters (nutrient concentrations, dissolved oxygen saturation, and pH) across sites. This study showed that several more abundant bacteria on U. laetevirens at stressed sites belonged to taxa related to the host response to the stressors. Overall, environmental parameters and anthropogenic stressors were shown to substantially affect seaweed associated bacterial communities, which reflect the host response to environmental variations.

scholarly journals Mechanistic strategies of microbial communities regulating lignocellulose deconstruction in a UK salt marsh

Microbiome ◽  
2021 ◽  
Vol 9 (1) ◽  
Author(s):  
Daniel R. Leadbeater ◽  
Nicola C. Oates ◽  
Joseph P. Bennett ◽  
Yi Li ◽  
Adam A. Dowle ◽  
...  
Keyword(s):  
Salt Marsh ◽  
Salt Marshes ◽  
Molecular Mechanisms ◽  
Surface Sediments ◽  
Gene Profiling ◽  
Oxidative Enzymes ◽  
Lignocellulose Degradation ◽  
Rrna Gene ◽  
Enzymatic Mechanisms

Abstract Background Salt marshes are major natural repositories of sequestered organic carbon with high burial rates of organic matter, produced by highly productive native flora. Accumulated carbon predominantly exists as lignocellulose which is metabolised by communities of functionally diverse microbes. However, the organisms that orchestrate this process and the enzymatic mechanisms employed that regulate the accumulation, composition and permanence of this carbon stock are not yet known. We applied meta-exo-proteome proteomics and 16S rRNA gene profiling to study lignocellulose decomposition in situ within the surface level sediments of a natural established UK salt marsh. Results Our studies revealed a community dominated by Gammaproteobacteria, Bacteroidetes and Deltaproteobacteria that drive lignocellulose degradation in the salt marsh. We identify 42 families of lignocellulolytic bacteria of which the most active secretors of carbohydrate-active enzymes were observed to be Prolixibacteracea, Flavobacteriaceae, Cellvibrionaceae, Saccharospirillaceae, Alteromonadaceae, Vibrionaceae and Cytophagaceae. These families secreted lignocellulose-active glycoside hydrolase (GH) family enzymes GH3, GH5, GH6, GH9, GH10, GH11, GH13 and GH43 that were associated with degrading Spartina biomass. While fungi were present, we did not detect a lignocellulolytic contribution from fungi which are major contributors to terrestrial lignocellulose deconstruction. Oxidative enzymes such as laccases, peroxidases and lytic polysaccharide monooxygenases that are important for lignocellulose degradation in the terrestrial environment were present but not abundant, while a notable abundance of putative esterases (such as carbohydrate esterase family 1) associated with decoupling lignin from polysaccharides in lignocellulose was observed. Conclusions Here, we identify a diverse cohort of previously undefined bacteria that drive lignocellulose degradation in the surface sediments of the salt marsh environment and describe the enzymatic mechanisms they employ to facilitate this process. Our results increase the understanding of the microbial and molecular mechanisms that underpin carbon sequestration from lignocellulose within salt marsh surface sediments in situ and provide insights into the potential enzymatic mechanisms regulating the enrichment of polyphenolics in salt marsh sediments.

Epibiosis on eggs and brooding care in the burrowing crab Chasmagnathus granulatus (Brachyura:Varunidae): comparison between mudflats and salt marshes

2007 ◽  
Vol 87 (4) ◽  
pp. 893-901 ◽  
Author(s):  
Paola V. Silva ◽  
Tomás A. Luppi ◽  
Eduardo D. Spivak
Keyword(s):  
Salt Marsh ◽  
Filamentous Fungi ◽  
Salt Marshes ◽  
Maternal Care ◽  
Spartina Densiflora ◽  
Incubation Chamber ◽  
Stage Of Development ◽  
Key Species ◽  
Burrowing Crab ◽  
Chasmagnathus Granulatus

Chasmagnathus granulatus is a semiterrestrial intertidal burrowing crab that inhabits both the unvegetated mudflats and the cordgrass (Spartina densiflora) salt marshes in Mar Chiquita Lagoon (Argentina), where it is considered the ecologically key species. The mass of C. granulatus eggs incubated by females is colonized by epibiotic micro-organisms and accumulates detritus. The type of epibionts that use eggs as a substrate, the infestation degree, the maternal care behaviour and the protection of the incubation chamber were compared between females living on mudflats and on Spartina-dominated areas. In both places, the epibiosis by bacteria and filamentous fungi and peritrichid colonial ciliate was significantly higher in the periphery than in the centre of the brood mass. The accumulation of detritus was higher in the periphery in mudflat females but not in salt marsh females. Moreover, the level of detritus was significantly higher in mudflat than in salt marsh females only in the periphery of the brood. The infestation level of bacteria and fungi, and peritrichids, increased throughout the embryonic development only in mudflat females. The periphery of the brood mass was significantly more contaminated in mudflat than in marsh females, while the central region of the brood mass did not differ between habitats. The pleopods were significantly more contaminated by bacteria and filamentous fungi and peritrichid colonial ciliates in premoult females than in postmoult females, independently from the collection site. The percentage of females with abnormal embryos was significantly higher in mudflats (26.7%) than in marshes (12.3%). Females with late embryos spent more time flapping the abdomen and probing the embryos with the chela. Non-ovigerous females did not perform specific maternal care activities. The volume of brood mass both in early or late stage of development is greater than that of the incubation chamber and, consequently, peripheral embryos are more exposed.

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