scholarly journals The cryo-EM structure of the bacterial flagellum cap complex suggests a molecular mechanism for filament elongation

2019 ◽  
Author(s):  
Natalie S. Al-Otaibi ◽  
Aidan J. Taylor ◽  
Daniel P. Farrell ◽  
Svetomir B. Tzokov ◽  
Frank DiMaio ◽  
...  
Keyword(s):  
Molecular Mechanism ◽  
Campylobacter Jejuni ◽  
Bacterial Cell ◽  
Molecular Basis ◽  
Molecular Model ◽  
Molecular Motor ◽  
Terminal Region ◽  
Bacterial Flagellum ◽  
Filament Assembly ◽  
Oligomeric Assembly

AbstractThe bacterial flagellum is a remarkable molecular motor, present at the surface of many bacteria, whose primary function is to allow motility through the rotation of a long filament protruding from the bacterial cell. A cap complex, consisting of an oligomeric assembly of the protein FliD, is localized at the tip of the flagellum, and is essential for filament assembly, as well as adherence to surfaces in some bacteria. However, the structure of the intact cap complex, and the molecular basis for its interaction with the filament, remains elusive. Here we report the cryo-EM structure of the Campylobacter jejuni cap complex. This structure reveals that FliD is pentameric, with the N-terminal region of the protomer forming an unexpected extensive set of contacts across several subunits, that contribute to FliD oligomerization. We also demonstrate that the native C. jejuni flagellum filament is 11-stranded and propose a molecular model for the filament-cap interaction.

scholarly journals Novel Conserved Assembly Factor of the Bacterial Flagellum

2006 ◽  
Vol 188 (21) ◽  
pp. 7700-7706 ◽  
Author(s):  
Björn Titz ◽  
Seesandra V. Rajagopala ◽  
Claudia Ester ◽  
Roman Häuser ◽  
Peter Uetz
Keyword(s):  
Bacillus Subtilis ◽  
Campylobacter Jejuni ◽  
Unknown Function ◽  
Treponema Pallidum ◽  
Terminal Region ◽  
Bacterial Flagellum ◽  
Assembly Factor

ABSTRACT TP0658 (FliW) and its orthologs, conserved proteins of unknown function in Treponema pallidum and other species, interact with a C-terminal region of flagellin (FlaB1-3 in T. pallidum; FliC in most other species). Mutants of orthologs in Bacillus subtilis and Campylobacter jejuni (yviF, CJ1075) showed strongly reduced motility. TP0658 stabilizes flagellin in a way similar to FliS, suggesting that TP0658 is a conserved assembly factor for the bacterial flagellum.

scholarly journals A DNase Encoded by Integrated Element CJIE1 Inhibits Natural Transformation of Campylobacter jejuni

2009 ◽  
Vol 191 (7) ◽  
pp. 2296-2306 ◽  
Author(s):  
Esther J. Gaasbeek ◽  
Jaap A. Wagenaar ◽  
Magalie R. Guilhabert ◽  
Marc M. S. M. Wösten ◽  
Jos P. M. van Putten ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Molecular Mechanism ◽  
Campylobacter Jejuni ◽  
Natural Transformation ◽  
Dnase Activity ◽  
Comparative Genome Hybridization ◽  
Dna Uptake ◽  
Knockout Mutant ◽  
Gene Encoding ◽  
Plasmid Analysis

ABSTRACT The species Campylobacter jejuni is considered naturally competent for DNA uptake and displays strong genetic diversity. Nevertheless, nonnaturally transformable strains and several relatively stable clonal lineages exist. In the present study, the molecular mechanism responsible for the nonnatural transformability of a subset of C. jejuni strains was investigated. Comparative genome hybridization indicated that C. jejuni Mu-like prophage integrated element 1 (CJIE1) was more abundant in nonnaturally transformable C. jejuni strains than in naturally transformable strains. Analysis of CJIE1 indicated the presence of dns (CJE0256), which is annotated as a gene encoding an extracellular DNase. DNase assays using a defined dns mutant and a dns-negative strain expressing Dns from a plasmid indicated that Dns is an endogenous DNase. The DNA-hydrolyzing activity directly correlated with the natural transformability of the knockout mutant and the dns-negative strain expressing Dns from a plasmid. Analysis of a broader set of strains indicated that the majority of nonnaturally transformable strains expressed DNase activity, while all naturally competent strains lacked this activity. The inhibition of natural transformation in C. jejuni via endogenous DNase activity may contribute to the formation of stable lineages in the C. jejuni population.

scholarly journals Addressing the Molecular Mechanism of Longitudinal Lamin Assembly Using Chimeric Fusions

Cells ◽  
2020 ◽  
Vol 9 (7) ◽  
pp. 1633 ◽  
Author(s):  
Giel Stalmans ◽  
Anastasia V. Lilina ◽  
Pieter-Jan Vermeire ◽  
Jan Fiala ◽  
Petr Novák ◽  
...  
Keyword(s):  
Cell Nucleus ◽  
Molecular Model ◽  
Coiled Coil ◽  
Cross Linking ◽  
Specific Interactions ◽  
Molecular Architecture ◽  
Filament Assembly ◽  
Assembly Mechanism ◽  
Recombinant Fragments ◽  
Chemical Cross Linking

The molecular architecture and assembly mechanism of intermediate filaments have been enigmatic for decades. Among those, lamin filaments are of particular interest due to their universal role in cell nucleus and numerous disease-related mutations. Filament assembly is driven by specific interactions of the elementary dimers, which consist of the central coiled-coil rod domain flanked by non-helical head and tail domains. We aimed to investigate the longitudinal ‘head-to-tail’ interaction of lamin dimers (the so-called ACN interaction), which is crucial for filament assembly. To this end, we prepared a series of recombinant fragments of human lamin A centred around the N- and C-termini of the rod. The fragments were stabilized by fusions to heterologous capping motifs which provide for a correct formation of parallel, in-register coiled-coil dimers. As a result, we established crystal structures of two N-terminal fragments one of which highlights the propensity of the coiled-coil to open up, and one C-terminal rod fragment. Additional studies highlighted the capacity of such N- and C-terminal fragments to form specific complexes in solution, which were further characterized using chemical cross-linking. These data yielded a molecular model of the ACN complex which features a 6.5 nm overlap of the rod ends.

scholarly journals Mechanism of synergistic actin filament pointed end depolymerization by cyclase-associated protein and cofilin

2019 ◽  
Vol 10 (1) ◽  
Author(s):  
Tommi Kotila ◽  
Hugo Wioland ◽  
Giray Enkavi ◽  
Konstantin Kogan ◽  
Ilpo Vattulainen ◽  
...  
Keyword(s):  
Molecular Mechanism ◽  
Actin Filament ◽  
Actin Filaments ◽  
Monomeric Form ◽  
Actin Monomer ◽  
Filament Assembly ◽  
Structural Work ◽  
Cytoskeletal Dynamics ◽  
Pointed End ◽  
Dependent Processes

AbstractThe ability of cells to generate forces through actin filament turnover was an early adaptation in evolution. While much is known about how actin filaments grow, mechanisms of their disassembly are incompletely understood. The best-characterized actin disassembly factors are the cofilin family proteins, which increase cytoskeletal dynamics by severing actin filaments. However, the mechanism by which severed actin filaments are recycled back to monomeric form has remained enigmatic. We report that cyclase-associated-protein (CAP) works in synergy with cofilin to accelerate actin filament depolymerization by nearly 100-fold. Structural work uncovers the molecular mechanism by which CAP interacts with actin filament pointed end to destabilize the interface between terminal actin subunits, and subsequently recycles the newly-depolymerized actin monomer for the next round of filament assembly. These findings establish CAP as a molecular machine promoting rapid actin filament depolymerization and monomer recycling, and explain why CAP is critical for actin-dependent processes in all eukaryotes.

scholarly journals 3P-164 Molecular mechanism of ATP hydrolysis reaction in F_1-ATPase molecular motor(The 46th Annual Meeting of the Biophysical Society of Japan)

2008 ◽  
Vol 48 (supplement) ◽  
pp. S152
Author(s):  
Abdul Rajjak Shaikh ◽  
Yuko Ito ◽  
Mitsunori Ikeguchi ◽  
Hiroshi Ueno ◽  
Hiroyuki Noji ◽  
...  
Keyword(s):  
Annual Meeting ◽  
Molecular Mechanism ◽  
Atp Hydrolysis ◽  
Molecular Motor ◽  
Hydrolysis Reaction ◽  
Biophysical Society

scholarly journals Role of the N- and C-terminal regions of FliF, the MS ring component in Vibrio flagellar basal body

2021 ◽  
Author(s):  
Seiji Kojima ◽  
Hiroki Kajino ◽  
Keiichi Hirano ◽  
Yuna Inoue ◽  
Hiroyuki Terashima ◽  
...  
Keyword(s):  
Basal Body ◽  
Ring Formation ◽  
Terminal Region ◽  
Wild Type ◽  
Transmembrane Segment ◽  
Bacterial Flagellum ◽  
Transmembrane Segments ◽  
Ring Assembly ◽  
C Terminus ◽  
N Terminus

AbstractThe MS ring is a part of the flagellar basal body and formed by 34 subunits of FliF, which consists of a large periplasmic region and two transmembrane segments connected to the N- and C-terminal regions facing the cytoplasm. A cytoplasmic protein, FlhF, which determines the position and number of the basal body, supports MS ring formation in the membrane. In this study, we constructed FliF deletion mutants that lack 30 or 50 residues at the N-terminus (ΔN30 and ΔN50), and 83 (ΔC83) or 110 residues (ΔC110) at the C-terminus. The N-terminal deletions were functional and conferred motility of Vibrio cells, whereas the C-terminal deletions were nonfunctional. The mutants were expressed in Escherichia coli to determine whether an MS ring could still be assembled. When co-expressing ΔN30FliF or ΔN50FliF with FlhF, fewer MS rings were observed than with the expression of wild-type FliF, in the MS ring fraction, suggesting that the N-terminus interacts with FlhF. MS ring formation is probably inefficient without an additional factor or FlhF. The deletion of the C-terminal cytoplasmic region did not affect the ability of FliF to form an MS ring because a similar number of MS rings were observed for ΔC83FliF as with wild-type FliF, although further deletion of the second transmembrane segment (ΔC110FliF) abolished it. These results suggest that the terminal regions of FliF have distinct roles; the N-terminal region for efficient MS ring formation and the C-terminal region for MS ring function. The second transmembrane segment is indispensable for MS ring assembly.ImportanceThe bacterial flagellum is a supramolecular architecture involved in cell motility. At the base of the flagella, a rotary motor that begins to construct an MS ring in the cytoplasmic membrane comprises 34 transmembrane proteins (FliF). Here, we investigated the roles of the N and C terminal regions of FliF, which are MS rings. Unexpectedly, the cytoplasmic regions of FliF are not indispensable for the formation of the MS ring, but the N-terminus appears to assist in ring formation through recruitment of FlhF, which is essential for flagellar formation. The C-terminus is essential for motor formation or function.

scholarly journals Interplay between MPIase, YidC, and PMF during Sec-independent insertion of membrane proteins

2021 ◽  
Vol 5 (1) ◽  
pp. e202101162
Author(s):  
Yuta Endo ◽  
Yuko Shimizu ◽  
Hanako Nishikawa ◽  
Katsuhiro Sawasato ◽  
Ken-ichi Nishiyama
Keyword(s):  
Membrane Proteins ◽  
Molecular Basis ◽  
Terminal Region ◽  
Integral Membrane Proteins ◽  
The Other ◽  
Other Hand ◽  
Model Protein

Integral membrane proteins with the N-out topology are inserted into membranes usually in YidC- and PMF-dependent manners. The molecular basis of the various dependencies on insertion factors is not fully understood. A model protein, Pf3-Lep, is inserted independently of both YidC and PMF, whereas the V15D mutant requires both YidC and PMF in vivo. We analyzed the mechanisms that determine the insertion factor dependency in vitro. Glycolipid MPIase was required for insertion of both proteins because MPIase depletion caused a significant defect in insertion. On the other hand, YidC depletion and PMF dissipation had no effects on Pf3-Lep insertion, whereas V15D insertion was reduced. We reconstituted (proteo)liposomes containing MPIase, YidC, and/or F0F1-ATPase. MPIase was essential for insertion of both proteins. YidC and PMF stimulated Pf3-Lep insertion as the synthesis level increased. V15D insertion was stimulated by both YidC and PMF irrespective of the synthesis level. These results indicate that charges in the N-terminal region and the synthesis level are the determinants of YidC and PMF dependencies with the interplay between MPIase, YidC, and PMF.

scholarly journals Molecular mechanism of N-terminal acetylation by the ternary NatC complex

2021 ◽  
Author(s):  
Sunbin Deng ◽  
Leah Gottlieb ◽  
Buyan Pan ◽  
Julianna Supplee ◽  
Xuepeng Wei ◽  
...  
Keyword(s):  
Substrate Specificity ◽  
Molecular Mechanism ◽  
Molecular Basis ◽  
Catalytic Subunit ◽  
Inositol Hexaphosphate ◽  
Auxiliary Subunits

AbstractProtein N-terminal acetylation is predominantly a ribosome-associated modification, with NatA-E serving as the major enzymes. NatC is the most unusual of these enzymes, containing one Naa30 catalytic subunit and two auxiliary subunits, Naa35 and Naa38; and substrate specificity profile that overlaps with NatE. Here, we report the Cryo-EM structure of S. pombe NatC with a NatE/C-type bisubstrate analogue and inositol hexaphosphate (IP6), and associated biochemistry studies. We find that the presence of three subunits is a prerequisite for normal NatC acetylation activity in yeast and that IP6 binds tightly to NatC to stabilize the complex. We also describe the molecular basis for IP6-mediated NatC complex stabilization and the overlapping yet distinct substrate profiles of NatC and NatE.

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