Breeding systems and phylogenetic diversity of seed plants along a large-scale elevational gradient

2010 ◽  
Vol 37 (3) ◽  
pp. 465-476 ◽  
Author(s):  
Steven M. Vamosi ◽  
Simon A. Queenborough
2019 ◽  
Vol 116 (46) ◽  
pp. 23192-23201 ◽  
Author(s):  
Hong Qian ◽  
Tao Deng ◽  
Yi Jin ◽  
Lingfeng Mao ◽  
Dan Zhao ◽  
...  

Species assemble into communities through ecological and evolutionary processes. Phylogenetic niche conservatism—the tendency of species to retain ancestral ecological distributions—is thought to influence which species from a regional species pool can persist in a particular environment. We analyzed data for seed plants in China to test hypotheses about the distribution of species within regional floras. Of 16 environmental variables, actual evapotranspiration, minimum temperature of the coldest month, and annual precipitation most strongly influenced regional species richness, phylogenetic dispersion, and phylogenetic diversity for both gymnosperms (cone-bearing plants) and angiosperms (flowering plants). For most evolutionary clades at, and above, the family level, the relationships between metrics of phylogenetic dispersion (i.e., average phylogenetic distance among species), or phylogenetic diversity, and the 3 environmental variables were consistent with the tropical niche conservatism hypothesis, which predicts closer phylogenetic relatedness and reduced phylogenetic diversity with increasing environmental stress. The slopes of the relationships between phylogenetic relatedness and the 3 environmental drivers identified in this analysis were steeper for primarily tropical clades, implying greater niche conservatism, than for primarily temperate clades. These observations suggest that the distributions of seed plants across large-scale environmental gradients in China are constrained by conserved adaptations to the physical environment, i.e., phylogenetic niche conservatism.


Diversity ◽  
2019 ◽  
Vol 11 (12) ◽  
pp. 234 ◽  
Author(s):  
Eric A. Griffin ◽  
Joshua G. Harrison ◽  
Melissa K. McCormick ◽  
Karin T. Burghardt ◽  
John D. Parker

Although decades of research have typically demonstrated a positive correlation between biodiversity of primary producers and associated trophic levels, the ecological drivers of this association are poorly understood. Recent evidence suggests that the plant microbiome, or the fungi and bacteria found on and inside plant hosts, may be cryptic yet important drivers of important processes, including primary production and trophic interactions. Here, using high-throughput sequencing, we characterized foliar fungal community diversity, composition, and function from 15 broadleaved tree species (N = 545) in a recently established, large-scale temperate tree diversity experiment using over 17,000 seedlings. Specifically, we tested whether increases in tree richness and phylogenetic diversity would increase fungal endophyte diversity (the “Diversity Begets Diversity” hypothesis), as well as alter community composition (the “Tree Diversity–Endophyte Community” hypothesis) and function (the “Tree Diversity–Endophyte Function” hypothesis) at different spatial scales. We demonstrated that increasing tree richness and phylogenetic diversity decreased fungal species and functional guild richness and diversity, including pathogens, saprotrophs, and parasites, within the first three years of a forest diversity experiment. These patterns were consistent at the neighborhood and tree plot scale. Our results suggest that fungal endophytes, unlike other trophic levels (e.g., herbivores as well as epiphytic bacteria), respond negatively to increasing plant diversity.


2018 ◽  
Vol 57 (3) ◽  
pp. 675-694 ◽  
Author(s):  
Katja Trachte ◽  
Jochen Seidel ◽  
Rafael Figueroa ◽  
Marco Otto ◽  
Joerg Bendix

AbstractSpatiotemporal precipitation patterns were investigated on the western slopes of the central Andes Mountains by applying EOF and cluster analysis as well as the Weather Research and Forecasting (WRF) Model. In the semiarid catchment area in the highlands of Lima, Peru, the precipitation is assumed to be a cross-scale interplay of large-scale dynamics, varying sea surface temperatures (SSTs), and breeze-dominated slope flows. The EOF analysis was used to encompass and elucidate the upper-level circulation patterns dominating the transport of moisture. To delineate local precipitation regimes, a partitioning cluster analysis was carried out, which additionally should illustrate local effects such as the altitudinal gradient of the Andes. The results demonstrated that especially during the transition to the dry season, synoptic-scale circulation aloft controls the precipitation (correlation coefficients between 0.6 and 0.9), whereas in the remaining seasons the slope breezes due to the altitudinal gradient mainly determine the precipitation behavior. Further analysis with regard to the spatiotemporal precipitation variability revealed an inversion of the precipitation distribution along the elevational gradient within the study area, mainly during February (29%) and March (35%), that showed correlations with coastal SST patterns ranging between 0.56 and 0.67. WRF simulations of the underlying mechanisms disclosed that the large-scale circulation influences the thermally induced upslope flows while the strength of southeastern low-level winds related to the coastal SSTs caused a blocking of easterlies in the middle troposphere through a reduced anticyclonic effect. This interplay enables the generation of precipitation in the usually drier environment at lower elevations, which leads to a decrease in rainfall with increasing elevation.


2021 ◽  
Vol 9 (12) ◽  
pp. 58-70
Author(s):  
Etienne N'Goran LOUKOU ◽  
K. Edouard N'GORAN ◽  
Gboko K. Gatien BROU

Local guinea fowl are the second most abundant poultry resource in the area, behind local chickens, and they are exploited in an uncontrolled system that affects production. Rural poultry farmers in 12 villages in the departments of Korhogo and Sinématiali participated in a descriptive study on their agricultural system. 35 local guinea fowl owners were asked to complete a semi-structured questionnaire. The findings show that in the Poro region, local méléagriculture is practiced solely in a large-scale system. This practice is restricted for men (94 %), supported by family members (68.60 %), and seen as secondary by the respondents (68.57 %). Farmers, planters, and retailers make up most of them (85.71 %). The original breeding nucleus was made up of eggs (80%) and female guinea fowl (14.28 %). Guinea fowls lay the first eggs at an average age of 7 months (54.28 percent), with the early ones around 6 months (20 %). The flocks are tiny (average of 25 guinea fowl) and are made up of mature (55.69%), young (23.11%), and early (11.40%) guinea fowl. All these guinea fowl have pearled feathers and are primarily grey (71.43 %). They live in rudimentary shelters and forage for food on the streets. The main causes of guinea fowl mortality (68.59 %) were rain and humidity, which had an impact on productivity. This region had the highest percentage of livestock items for sale (62.84%). The socio-economic position of the farmer, the farming method, and the utilization of chicken products were used to identify three agricultural sub-systems.


2020 ◽  
Vol 11 (1) ◽  
Author(s):  
Bianca Saladin ◽  
Loïc Pellissier ◽  
Catherine H. Graham ◽  
Michael P. Nobis ◽  
Nicolas Salamin ◽  
...  

Abstract Scientific understanding of biodiversity dynamics, resulting from past climate oscillations and projections of future changes in biodiversity, has advanced over the past decade. Little is known about how these responses, past or future, are spatially connected. Analyzing the spatial variability in biodiversity provides insight into how climate change affects the accumulation of diversity across space. Here, we evaluate the spatial variation of phylogenetic diversity of European seed plants among neighboring sites and assess the effects of past rapid climate changes during the Quaternary on these patterns. Our work shows a marked homogenization in phylogenetic diversity across Central and Northern Europe linked to high climate change velocity and large distances to refugia. Our results suggest that the future projected loss in evolutionary heritage may be even more dramatic, as homogenization in response to rapid climate change has occurred among sites across large landscapes, leaving a legacy that has lasted for millennia.


mSystems ◽  
2020 ◽  
Vol 5 (4) ◽  
Author(s):  
Elizabeth A. McDaniel ◽  
Benjamin D. Peterson ◽  
Sarah L. R. Stevens ◽  
Patricia Q. Tran ◽  
Karthik Anantharaman ◽  
...  

ABSTRACT Methylmercury is a potent bioaccumulating neurotoxin that is produced by specific microorganisms that methylate inorganic mercury. Methylmercury production in diverse anaerobic bacteria and archaea was recently linked to the hgcAB genes. However, the full phylogenetic and metabolic diversity of mercury-methylating microorganisms has not been fully unraveled due to the limited number of cultured experimentally verified methylators and the limitations of primer-based molecular methods. Here, we describe the phylogenetic diversity and metabolic flexibility of putative mercury-methylating microorganisms by hgcAB identification in publicly available isolate genomes and metagenome-assembled genomes (MAGs) as well as novel freshwater MAGs. We demonstrate that putative mercury methylators are much more phylogenetically diverse than previously known and that hgcAB distribution among genomes is most likely due to several independent horizontal gene transfer events. The microorganisms we identified possess diverse metabolic capabilities spanning carbon fixation, sulfate reduction, nitrogen fixation, and metal resistance pathways. We identified 111 putative mercury methylators in a set of previously published permafrost metatranscriptomes and demonstrated that different methylating taxa may contribute to hgcA expression at different depths. Overall, we provide a framework for illuminating the microbial basis of mercury methylation using genome-resolved metagenomics and metatranscriptomics to identify putative methylators based upon hgcAB presence and describe their putative functions in the environment. IMPORTANCE Accurately assessing the production of bioaccumulative neurotoxic methylmercury by characterizing the phylogenetic diversity, metabolic functions, and activity of methylators in the environment is crucial for understanding constraints on the mercury cycle. Much of our understanding of methylmercury production is based on cultured anaerobic microorganisms within the Deltaproteobacteria, Firmicutes, and Euryarchaeota. Advances in next-generation sequencing technologies have enabled large-scale cultivation-independent surveys of diverse and poorly characterized microorganisms from numerous ecosystems. We used genome-resolved metagenomics and metatranscriptomics to highlight the vast phylogenetic and metabolic diversity of putative mercury methylators and their depth-discrete activities in thawing permafrost. This work underscores the importance of using genome-resolved metagenomics to survey specific putative methylating populations of a given mercury-impacted ecosystem.


2020 ◽  
Vol 227 (5) ◽  
pp. 1544-1556 ◽  
Author(s):  
Daniel S. Park ◽  
Charles G. Willis ◽  
Zhenxiang Xi ◽  
John T. Kartesz ◽  
Charles C. Davis ◽  
...  

Author(s):  
Weibo Du ◽  
Peng Jia ◽  
Guozhen Du

Large-scale patterns of biodiversity and the underlying mechanisms that regulate these patterns are central topics in biogeography and macroecology. The Qinghai-Tibetan Plateau (QTP) is a natural laboratory for studying these issues. However, most previous studies have focused on the entire QTP, and the independent physical geographical subunits in the region are not well understood. We studied the current plant diversity on the Kunlun Mountains, an independent physical geographical subunit located in northwest China, on the northern edge of the QTP. We integrated measures of species distribution, geological history, and phylogeography, and analyzed the taxonomic richness, origin time, and community phylogenetic structure of the plants present in the area. The distribution patterns of 1,911 seed plants highlighted that species were located mainly in the eastern regions of the Kunlun Mountains. Chinese endemic species of seed plants accounted for 29.8% of the total species on the Kunlun Mountains. The biodiversity patterns and mean divergence times (MDT) indicated that the eastern region of the Kunlun Mountains was the center for biodiversity conservation, particularly in the southeastern region, which has served as a museum for plant diversity on the Kunlun Mountains. According to the MDT, the origin time of the Kunlun Mountains’ flora (KMF) was early Miocene (19.40 Ma), and the KMF is ancient. The biogeographical roles of the Kunlun Mountains were corridor and sink, and the corresponding key processes were species immigration and extinction. The extant biodiversity on the Kunlun Mountains has occurred through species recolonization after climatic fluctuations and glaciations during the Quaternary. The Kunlun Mountains also formed a barrier, representing a boundary among multiple floras, and converted the QTP into a closed physical geographical unit. The nearest taxon index indicated that habitat filtering may have played an important role in biodiversity patterns.


2021 ◽  
Vol 10 (1) ◽  
Author(s):  
Kumar Manish

Abstract Background So far, macroecological studies in the Himalaya have mostly concentrated on spatial variation of overall species richness along the elevational gradient. Very few studies have attempted to document the difference in elevational richness patterns of native and exotic species. In this study, this knowledge gap is addressed by integrating data on phylogeny and elevational distribution of species to identify the variation in species richness, phylogenetic diversity and phylogenetic structure of exotic and native plant species along an elevational gradient in the Himalaya. Results Species distribution patterns for exotic and native species differed; exotics tended to show maximum species richness at low elevations while natives tended to predominate at mid-elevations. Native species assemblages showed higher phylogenetic diversity than the exotic species assemblages over the entire elevational gradient in the Himalaya. In terms of phylogenetic structure, exotic species assemblages showed majorly phylogenetic clustering while native species assemblages were characterized by phylogenetic overdispersion over the entire gradient. Conclusions The findings of this study indicate that areas with high native species richness and phylogenetic diversity are less receptive to exotic species and vice versa in the Himalaya. Species assemblages with high native phylogenetic overdispersion are less receptive to exotic species than the phylogenetically clustered assemblages. Different ecological processes (ecological filtering in case of exotics and resource and niche competition in case of natives) may govern the distribution of exotic and native species along the elevational gradient in the Himalaya.


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