scholarly journals Validation Metrics for Fixed Effects and Mixed-Effects Calibration

Author(s):  
Nathan W. Porter ◽  
Kathryn A. Maupin ◽  
Laura P. Swiler ◽  
Vincent A. Mousseau

Abstract The modern scientific process often involves the development of a predictive computational model. To improve its accuracy, a computational model can be calibrated to a set of experimental data. A variety of validation metrics can be used to quantify this process. Some of these metrics have direct physical interpretations and a history of use, while others, especially those for probabilistic data, are more difficult to interpret. In this work, a variety of validation metrics are used to quantify the accuracy of different calibration methods. Frequentist and Bayesian perspectives are used with both fixed effects and mixed-effects statistical models. Through a quantitative comparison of the resulting distributions, the most accurate calibration method can be selected. Two examples are included which compare the results of various validation metrics for different calibration methods. It is quantitatively shown that, in the presence of significant laboratory biases, a fixed effects calibration is significantly less accurate than a mixed-effects calibration. This is because the mixed-effects statistical model better characterizes the underlying parameter distributions than the fixed effects model. The results suggest that validation metrics can be used to select the most accurate calibration model for a particular empirical model with corresponding experimental data.

Author(s):  
Н.Н. Дубенок ◽  
В.В. Кузьмичев ◽  
А.В. Лебедев

Основными исходными данными для определения запаса служат результаты обмеров диаметров и высот деревьев. Но обмеры диаметров деревьев на высоте груди выполнить намного проще, чем обмеры высот, поэтому ограничиваются замерами высот 15–25 деревьев. Цель исследования – по материалам измерения модельных деревьев в сосновых древостоях выбрать наиболее адекватную простую модель, которая передает зависимость между высотой деревьев и диаметром на высоте груди. Объектом исследования послужили сосновые древостои искусственного происхождения на постоянных пробных площадях в Лесной опытной даче Российского государственного агарного университета – МСХА имени К.А. Тимирязева. В работе используются данные обмеров деревьев на 17 постоянных пробных площадях с 1934 по 2005 гг. Возраст древостоев на момент проведения измерений от 50 до 125 лет. По итогам проведения 77 перечетов массив данных составил 1157 наблюдений. И модель фиксированных эффектов, и модель смешанных эффектов адекватно описали зависимость между высотами и диаметрами деревьев в культурах сосны. Но, как и ожидалось, первая модель имеет худшие значения метрик качества по сравнению со второй. Модель со смешанными эффектами более точно предсказывает значения высот по сравнению с моделью фиксированных эффектов. Недостающие значения высот большого количества деревьев на участке можно вычислить более точно с помощью модели смешанных эффектов, а не применения модели фиксированных эффектов или использования только фиксированной части (средний отклик) модели смешанных эффектов. Применение разработанной модели должно ограничиваться только в тех условиях, к которым относятся экспериментальные материалы The main data for the stock of research results is the diameter of measurements and heights of trees. But measurements of the diameter at breast height are much easier to perform than measurements of heights, therefore, they are limited to measuring the heights of 15–25 trees. The aim of the study is to select the most adequate simple model based on the measurements of model trees in pine antiquities, which conveys the relationship between the height of trees and the diameter at breast height. The object of the study was pine stands of artificial origin on permanent test plots in the Forest Experimental Station Russian State Agararian University – Moscow Timiriazev Agricultural Academy. The work uses data from tree measurements on 17 permanent sample plots from 1934 to 2005. The age of the stands at the time of measurements was from 50 to 125 years. As a result of 77 enumerations, the data array amounted to 1157 observations. Both the fixed effects model and the mixed effects model adequately describe the relationship between heights and diameters of trees in pine stumps. But, as expected, the first model has worse quality metrics than the second. The mixed effects model more accurately predicts heights from the fixed effects model. The missing heights of a large number of trees on a site can be calculated accurately using mixed effects models, rather than using fixed effects models or using only a fixed portion (mean response) of the mixed effects model. The application of the developed model should be limited only in those conditions to which the experimental materials are applied.


1975 ◽  
Vol 85 (3) ◽  
pp. 575-576 ◽  
Author(s):  
B. K. Thompson

SUMMARYSome misconceptions concerning the application of Griffing's fixed effects model I and mixed effects model B are discussed.


1994 ◽  
Vol 48 (3) ◽  
pp. 327-332 ◽  
Author(s):  
Trygve Almøy ◽  
Espen Haugland

The properties of the recently proposed calibration method called restricted principal component regression (RPCR) were evaluated and compared with partial least-squares regression (PLSR) and two types of principal component regression (PCR1, selected according to the size of the eigenvalues, and PCR2, selected according to the t-value). RPCR can be considered a compromise between PCR and PLSR, since the first component of RPCR is equivalent to the first component of PLSR, while the rest can be regarded as principal components on a space orthogonal to the first. The methods showed almost the same properties when the irrelevant components had small eigenvalues. The prediction error of RPCR selected according to the size of the eigenvalues was intermediate to those of PCR1 and PLSR when the number of components was low, while RPCR and PCR1 nearly coincided when the number of components exceeded the number of relevant ones. The prediction error minimum was about the same for RPCR, PCR1, and PLSR, but the minimum of PLSR was obtained when a lower number of components were included in the calibration model.


Forests ◽  
2018 ◽  
Vol 9 (12) ◽  
pp. 747 ◽  
Author(s):  
Brian Anderson ◽  
Matthew Russell ◽  
Marcella Windmuller-Campione ◽  
Brian Palik ◽  
Douglas Kastendick

The black spruce cover type occupies roughly 10% of Minnesota’s 7 million hectares of forestland, and is an important species, both ecologically and economically. A clearcut regeneration harvest is the main silvicultural system in black spruce in this region. The effects of managing black spruce with alternative silvicultural methods in the Lake States remains largely understudied. Here, we examine a silviculture study in lowland black spruce to assess the performance of two diameter growth models fit to this data compared to a widely-used model. Six silvicultural treatments (clearcut strips, clearcut patches, thinning, group selection, single-tree selection, and shelterwood) and a control were treated and measured around 1950, with a follow-up measurement occurring 10 years later. Fixed- and mixed-effects growth-models were adapted from the previous work, and fit to 10,231 observations and compared to a recently released diameter growth model. The mixed-effects model using treatment, compartment, and plot as nested random effects outperformed the fixed-effects model, and outperformed a model proposed for use in the Lake States variant of the Forest Vegetation Simulator that was fit to this data. This modeling approach of localized growth models across a wide-range of diameters (9.1–32.1 cm) more accurately predicted the diameter growth in lowland black spruce than the conventional approach of using separate models for large (>12.7 cm) and small (≤12.7 cm) diameter trees.


2013 ◽  
Vol 321-324 ◽  
pp. 842-846
Author(s):  
Song Tian ◽  
Jian She Song ◽  
Tie Jian Yang ◽  
Lian Feng Wang ◽  
Bao Shun Zhou

Radiometric calibration of synthetic aperture radar (SAR) is an important work related to pixel values and the backscattering coefficient of ground targets. With a consideration of the difference between near space and spaceborne, airborne platforms, this paper proposes the radiometric calibration method which is applicable to near space platform. A radiometric calibration model of near space SAR is established, and it is analyzed and validated by experimental data.


1983 ◽  
Vol 32 (3-4) ◽  
pp. 153-168 ◽  
Author(s):  
A, C. Mukhopadhyay ◽  
Rita Saha

In the present paper Repeated Measurement Designs (RMD's) have been studied under mixed effects model, assuming unit effects to be random and most of the optimality results of RMD's proved under fixed effects model by Hedayat et. al (1978), Magda (1980) and Cheng et. al (1980) have been reestablished in the context of mixed effects model.


Forests ◽  
2019 ◽  
Vol 10 (11) ◽  
pp. 975 ◽  
Author(s):  
Karol Bronisz ◽  
Michał Zasada

Diameter measurements along the stem, which are the basis for taper models, usually have a hierarchical structure. Mixed-effects models, where fixed and random effects are distinguished, are a possible solution for this type of data. However, in order to fully absorb the potential of this method, random effects prediction, which requires additional measurements (diameter along stem), is recommended. This article presents a comparison of various fitting methods (mixed- and fixed-effects model approaches) of the variable-exponent taper model created by Kozak for determining the outside bark diameter along the stem and predicting the tree volume of Scots pine trees in west Poland. During the analysis, it was assumed that no additional measured data were available for practical use; therefore, for the mixed-effects model approach, fixed effects prediction without random effects was applied. Both fitting strategies were compared based on modeling and an independent validation data set. The comparison of mixed- and fixed-effects fitting strategies for the diameter along the stem indicated that the taper model fitted using the mixed-effects model approach better fit the data. Moreover, the error rate for the total tree volume prediction for the independent data set was lower for the mixed-effects model solution than for the fixed-effects one.


2020 ◽  
Vol 64 (4) ◽  
pp. 40406-1-40406-11
Author(s):  
He Huang ◽  
Yizhou Xue ◽  
Dean Luo

Abstract In recent years, a variety of mobile road measurement equipment has emerged and become an important means of collecting spatial information. As an important part of the mobile road measurement system, a camera’s function implementation and data accuracy largely depend on its internal parameters and the rotation and translation parameters corresponding to the world coordinate system. Based on this and on the traditional camera calibration method, radial and tangential distortion for monocular camera calibration is introduced in this article to establish a calibration model, and the nonlinear least-squares Levenberg‐Marquardt optimization algorithm is used in iterative calculation. The parameters provide a solution to the problem of rapid calibration of camera modules in mobile road measurement systems. The camera parameters obtained by the calibration algorithm in this study are used for visual reconstruction. Compared with two Zhang Zhengyou calibration methods optimized by the Gauss‐Newton method, the former has an average pixel offset of 0.28 pixel and the latter has deviations of 0.66 and 0.38 pixel. Using a monocular camera to collect data on geometric targets on a road, the average relative error does not exceed 2.16%. Experiments show that this method can obtain calibration results quickly and accurately.


Author(s):  
Nur Widiastuti

The Impact of monetary Policy on Ouput is an ambiguous. The results of previous empirical studies indicate that the impact can be a positive or negative relationship. The purpose of this study is to investigate the impact of monetary policy on Output more detail. The variables to estimatate monetery poicy are used state and board interest rate andrate. This research is conducted by Ordinary Least Square or Instrumental Variabel, method for 5 countries ASEAN. The state data are estimated for the period of 1980 – 2014. Based on the results, it can be concluded that the impact of monetary policy on Output shown are varied.Keyword: Monetary Policy, Output, Panel Data, Fixed Effects Model


2020 ◽  
Vol 20 (13) ◽  
pp. 1604-1612
Author(s):  
Congcong Wu ◽  
Hua Jiang ◽  
Jianghua Chen

Background: Although the adjuvant therapy of bisphosphonates in prostate cancer is effective in improving bone mineral density, it is still uncertain whether bisphosphonates could decrease the risk of Skeletal- Related Event (SRE) in patients with prostate cancer. We reviewed and analyzed the effect of different types of bisphosphonates on the risk of SRE, defined as pathological fracture, spinal cord compression, radiation therapy to the bone, surgery to bone, hypercalcemia, bone pain, or death as a result of prostate cancer. Methods: A systemic literature search was conducted on PubMed and related bibliographies. The emphasis during data extraction was laid on the Hazard Ratio (HR) and the corresponding 95% Confidence Interval (CI) from every eligible Randomized Controlled Trial (RCT). HR was pooled with the fixed effects model, and preplanned subgroup analyses were performed. Results: 5 RCTs (n = 4651) were included and analyzed finally after screening 51 articles. The meta-analysis of all participants showed no significant decrease in the risk of SRE when adding bisphosphonates to control group (HR = 0.968, 95% CI = 0.874 - 1.072, p = 0.536) with low heterogeneity (I2 = 0.0% (d.f. = 4) p = 0.679). There was no significant improvement on SRE neither in the subgroups with Metastases (M1) or Castration-Sensitive Prostate Cancer (CSPC) (respectively HR = 0.968, 95% CI = 0.874 - 1.072, p = 0.536, I2 = 0.0% (d.f. = 4) p = 0.679; HR = 0.954, 95% CI = 0.837 - 1.088, p = 0.484, I2 = 0.0% (d.f. = 3) p = 0.534). Conclusion: Our study demonstrated that bisphosphonates could not statistically significantly reduce the risk of SRE in patients with prostate cancer, neither in the subgroups with M1 or CSPC.


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