Bacterial presence in polar regions associated with environment modification by chemical compounds including contaminants

2017 ◽  
Vol 25 (4) ◽  
pp. 481-491 ◽  
Author(s):  
Klaudia Kosek ◽  
Katarzyna Jankowska ◽  
Żaneta Polkowska
Keyword(s):  
Bacterial Communities ◽  
Chemical Compounds ◽  
Freshwater Ecosystems ◽  
Trophic Levels ◽  
Polar Regions ◽  
Bacterial Cells ◽  
Chemical Contamination ◽  
Climate Conditions ◽  
Biological Communities ◽  
Long Time

Microbes are omnipresent and diverse members of all biological communities. In marine and freshwater ecosystems, microorganisms form the base of the food chain supporting higher trophic levels. Even though microbes are generally thought to live in warm regions of Earth, many of them develop in cold climates. Polar regions remain relatively protected from widespread anthropogenic disturbances, which is a consequence of thier remoteness and extreme climate conditions. For a long time these regions were considered to be free from chemical contamination until scientists discovered a presence of pollutants there. Chemical contamination may induce serious disorders in the integrity of polar ecosystems influencing the growth of bacterial communities. Xenobiotics including persistent organic pollutants are transported thousands of kilometers by the air and ocean currents, and they are deposed in high-latitude regions and accumulate in all elements of the environment including bacterial communities. It is important to determine their concentration levels in bacterial cells to assess the possibility of contaminants becoming transferred to higher trophic levels; however, some species of bacteria are capable of metabolizing xenobiotics, which makes them less toxic or even removes them from the environment.

Anthropology and Environmental Problems in the U.S.: The Case of Groundwater Contamination

1988 ◽  
Vol 10 (3-4) ◽  
pp. 5-20 ◽  
Author(s):  
Janet Fitchen
Keyword(s):  
Drinking Water ◽  
Chemical Compounds ◽  
Underground Storage ◽  
Chemical Contamination ◽  
Storage Tanks ◽  
Agricultural Chemicals ◽  
Underground Storage Tanks ◽  
Industrial Operations ◽  
Improper Use ◽  
The U.S

Chemical contamination of groundwater has become increasingly prevalent in the U.S. Once thought to be safe from pollution, the underground aquifers that supply drinking water to about half of the U.S. population are now known to be vulnerable to contamination from leaking landfills, waste lagoons, underground storage tanks, improper use of agricultural chemicals, and various industrial operations. Manufactured chemical compounds, including industrial degreasers and solvents, as well as gasoline, pesticides and fertilizers (in all, over 700 synthetic organic chemicals) have seeped down through the soil to the aquifers and been detected in ground water. Nearly every state has identified cases of contamination serious enough to require closing of some public or private supply wells.

scholarly journals Generalized receptor law governs phototaxis in the phytoplanktonEuglena gracilis

2015 ◽  
Vol 112 (22) ◽  
pp. 7045-7050 ◽  
Author(s):  
Andrea Giometto ◽  
Florian Altermatt ◽  
Amos Maritan ◽  
Roman Stocker ◽  
Andrea Rinaldo
Keyword(s):  
Algal Blooms ◽  
Nonlinear Response ◽  
Temporal Dynamics ◽  
Freshwater Ecosystems ◽  
Trophic Levels ◽  
Light Fields ◽  
Light Sources ◽  
Mathematical Framework ◽  
Heterogeneous Environments ◽  
Light Conditions

Phototaxis, the process through which motile organisms direct their swimming toward or away from light, is implicated in key ecological phenomena (including algal blooms and diel vertical migration) that shape the distribution, diversity, and productivity of phytoplankton and thus energy transfer to higher trophic levels in aquatic ecosystems. Phototaxis also finds important applications in biofuel reactors and microbiopropellers and is argued to serve as a benchmark for the study of biological invasions in heterogeneous environments owing to the ease of generating stochastic light fields. Despite its ecological and technological relevance, an experimentally tested, general theoretical model of phototaxis seems unavailable to date. Here, we present accurate measurements of the behavior of the algaEuglena graciliswhen exposed to controlled light fields. Analysis ofE. gracilis’ phototactic accumulation dynamics over a broad range of light intensities proves that the classic Keller–Segel mathematical framework for taxis provides an accurate description of both positive and negative phototaxis only when phototactic sensitivity is modeled by a generalized “receptor law,” a specific nonlinear response function to light intensity that drives algae toward beneficial light conditions and away from harmful ones. The proposed phototactic model captures the temporal dynamics of both cells’ accumulation toward light sources and their dispersion upon light cessation. The model could thus be of use in integrating models of vertical phytoplankton migrations in marine and freshwater ecosystems, and in the design of bioreactors.

scholarly journals Potential impacts to freshwater ecosystems caused by flow regime alteration under changing climate conditions in Taiwan

2008 ◽  
Vol 5 (6) ◽  
pp. 3005-3032 ◽  
Author(s):  
J.-P. Suen
Keyword(s):  
Climate Change ◽  
Flow Regime ◽  
River Flow ◽  
Aquatic Organisms ◽  
Freshwater Ecosystems ◽  
Climate Conditions ◽  
Regime Changes ◽  
Changing Climate ◽  
Extreme Flood ◽  
Precautionary Measures

Abstract. Observed increases in the Earth's surface temperature bring with them associated changes in precipitation and atmospheric moisture that consequentially alter river flow regimes. This paper uses the Indicators of Hydrologic Alteration approach to examine climate-induced flow regime changes that can potentially affect freshwater ecosystems. Analyses of the annual extreme water conditions at 23 gauging stations throughout Taiwan reveal large alterations in recent years; extreme flood and drought events were more frequent in the period after 1991 than from 1961–1990, and the frequency and duration of the flood and drought events also show high fluctuation. Climate change forecasts suggest that such flow regime alterations are going to continue into the foreseeable future. Aquatic organisms not only feel the effects of anthropogenic damage to river systems, but they also face on-going threats of thermal and flow regime alterations associated with climate change. This paper calls attention to the issue, so that water resources managers can take precautionary measures that reduce the cumulative effects from anthropogenic influence and changing climate conditions.

scholarly journals A First Glimpse on Cold-Adapted PCB-Oxidizing Bacteria in Edmonson Point Lakes (Northern Victoria Land, Antarctica)

Water ◽  
2022 ◽  
Vol 14 (1) ◽  
pp. 109
Author(s):  
Maria Papale ◽  
Angelina Lo Giudice ◽  
Alessandro Ciro Rappazzo ◽  
Maurizio Azzaro ◽  
Carmen Rizzo
Keyword(s):  
Human Impacts ◽  
Current Knowledge ◽  
Freshwater Ecosystems ◽  
Trophic Levels ◽  
Cold Adapted ◽  
Remote Areas ◽  
Victoria Land ◽  
Long Lifetime ◽  
Aroclor 1242 ◽  
Edmonson Point

Antarctic freshwater ecosystems are especially vulnerable to human impacts. Polychlorobiphenyls (PCBs) are persistent organic pollutants that have a long lifetime in the environment. Despite their use having either been phased out or restricted, they are still found in nature, also in remote areas. Once in the environment, the fate of PCBs is strictly linked to bacteria which represent the first step in the transfer of toxic compounds to higher trophic levels. Data on PCB-oxidizing bacteria from polar areas are still scarce and fragmented. In this study, the occurrence of PCB-oxidizing cold-adapted bacteria was evaluated in water and sediment of four coastal lakes at Edmonson Point (Northern Victoria Land, Antarctica). After enrichment with biphenyl, 192 isolates were obtained with 57 of them that were able to grow in the presence of the PCB mixture Aroclor 1242, as the sole carbon source. The catabolic gene bphA, as a proxy for PCB degradation potential, was harbored by 37 isolates (out of 57), mainly affiliated to the genera Salinibacterium, Arthrobacter (among Actinobacteria) and Pusillimonas (among Betaproteobacteria). Obtained results enlarge our current knowledge on cold-adapted PCB-oxidizing bacteria and pose the basis for their potential application as a valuable eco-friendly tool for the recovery of PCB-contaminated cold sites.

scholarly journals MiSiC, a general deep learning-based method for the high-throughput cell segmentation of complex bacterial communities

eLife ◽  
2021 ◽  
Vol 10 ◽  
Author(s):  
Swapnesh Panigrahi ◽  
Dorothée Murat ◽  
Antoine Le Gall ◽  
Eugénie Martineau ◽  
Kelly Goldlust ◽  
...  
Keyword(s):  
Deep Learning ◽  
Bacterial Communities ◽  
Cell Biology ◽  
Imaging Modality ◽  
Interaction Model ◽  
Cell Segmentation ◽  
Bacterial Cells ◽  
Interspecies Interactions ◽  
Prey Interaction ◽  
Simple Implementation

Studies of bacterial communities, biofilms and microbiomes, are multiplying due to their impact on health and ecology. Live imaging of microbial communities requires new tools for the robust identification of bacterial cells in dense and often inter-species populations, sometimes over very large scales. Here, we developed MiSiC, a general deep-learning-based 2D segmentation method that automatically segments single bacteria in complex images of interacting bacterial communities with very little parameter adjustment, independent of the microscopy settings and imaging modality. Using a bacterial predator-prey interaction model, we demonstrate that MiSiC enables the analysis of interspecies interactions, resolving processes at subcellular scales and discriminating between species in millimeter size datasets. The simple implementation of MiSiC and the relatively low need in computing power make its use broadly accessible to fields interested in bacterial interactions and cell biology.

Microbial Diversity in the Glacial Ecosystem of Antarctic, Arctic, and Tibetan Plateau: Properties and Response to the Environmental Condition

2020 ◽  
Vol 9 (1) ◽  
pp. 231-250
Author(s):  
Birendra Prasad Sharma ◽  
Subash Adhikari ◽  
Ganesh Paudel ◽  
Namita Paudel Adhikari
Keyword(s):  
Tibetan Plateau ◽  
Microbial Diversity ◽  
Bacterial Communities ◽  
Environmental Changes ◽  
Anthropogenic Activities ◽  
Relevant Literature ◽  
The Tibetan Plateau ◽  
Polar Regions ◽  
Cold Temperatures ◽  
Bacterial Phyla

Microorganisms, as successive members of the food web, play a major role in biological processes. They are found in environments ranging from extremely hot to harsh cold temperatures. Thus, the study of bacterial communities in various ecosystems is of great concern around the world. The glacier is one of the parts of the cryosphere, which is the key component and sensitive indicator of climatic and environmental changes. A glacial ecosystem is a habitat for various microorganisms, i.e., autotrophic and heterotrophic. Different physicochemical parameters like temperature, pH, electrical conductivity, the input of nutrient concentration, precipitation, ions concentrations, etc. influence the microbial diversity in the glacial ecosystem for their metabolic processes. Successive studies of bacterial communities in the Himalayan glacial ecosystem are reliable proxies to know the relationships between microbial biodiversity and climate change since the Himalayan glaciers are free from anthropogenic activities. After the study of the relevant literature, it is clear that the researches. have been carried out in the Polar Regions, and the Tibetan plateau mainly focused on the glacial ecosystem. This review concluded that Proteobacteria, Bacteroidetes, Cyanobacteria, Firmicutes, Verrucomicrobia, and Actinobacteria were the most dominant bacterial phyla via 16S rRNA clone libraries and Illumina MiSeq. Alter in landscapes, nutrient cycles, exposure of light, shifting on the concentration of different elements, glacier retreats were the major components for survival strength of dominant bacterial phyla. However, limited studies on the glacial ecosystem of the Himalayas have been published. Thus, the study of bacterial abundance, diversity, and community in the Himalayas will help plug this research gap.

scholarly journals High levels of endemism and local differentiation in the fungal and algal symbionts of saxicolous lecideoid lichens along a latitudinal gradient in southern South America

2020 ◽  
Vol 52 (4) ◽  
pp. 287-303 ◽  
Author(s):  
Ulrike Ruprecht ◽  
Fernando Fernández-Mendoza ◽  
Roman Türk ◽  
Alan M. Fryday
Keyword(s):  
South America ◽  
Latitudinal Gradient ◽  
Molecular Genetic ◽  
Regional Differentiation ◽  
High Mountain ◽  
Polar Regions ◽  
Southern South America ◽  
Climate Conditions ◽  
Algal Symbionts ◽  
Molecular Genetic Data

AbstractSaxicolous, lecideoid lichenized fungi have a cosmopolitan distribution but, being mostly cold adapted, are especially abundant in polar and high-mountain regions. To date, little is known of their origin or the extent of their trans-equatorial dispersal. Several mycobiont genera and species are thought to be restricted to either the Northern or the Southern Hemisphere, whereas others are thought to be widely distributed and occur in both hemispheres. However, these assumptions often rely on morphological analyses and lack supporting molecular genetic data. Also unknown is the extent of regional differentiation in the southern polar regions. An extensive set of lecideoid lichens (185 samples) was collected along a latitudinal gradient at the southern end of South America. Subantarctic climate conditions were maintained by increasing the elevation of the collecting sites with decreasing latitude. The investigated specimens were placed in a global context by including Antarctic and cosmopolitan sequences from other studies. For each symbiont three markers were used to identify intraspecific variation (mycobiont: ITS, mtSSU, RPB1; photobiont: ITS, psbJ-L, COX2). For the mycobiont, the saxicolous genera Lecidea, Porpidia, Poeltidea and Lecidella were phylogenetically re-evaluated, along with their photobionts Asterochloris and Trebouxia. For several globally distributed species groups, the results show geographically highly differentiated subclades, classified as operational taxonomical units (OTUs), which were assigned to the different regions of southern South America (sSA). Furthermore, several small endemic and well-supported clades apparently restricted to sSA were detected at the species level for both symbionts.

Non-pollen Palynomorphs in Freshwater Sediments and their Palaeolimnological Potential and Selected Applications

2020 ◽  
pp. SP511-2020-109
Author(s):  
F. M. C. McCarthy ◽  
P. M. Pilkington ◽  
O. Volik ◽  
A. Heyde ◽  
S. L. Cocker
Keyword(s):  
Lake Sediments ◽  
Freshwater Ecosystems ◽  
Trophic Levels ◽  
Agricultural Activity ◽  
Content Type ◽  
The Past ◽  
Nutrient Influx ◽  
Supplementary Material ◽  
Research Questions ◽  
Processing Techniques

AbstractThe earliest eukaryotes recorded in continental environments are non-pollen palynomorphs (NPP) in Mesoproterozoic strata, and NPP provide our best insights into lacustrine ecosystems through the Paleogene. They have been underexploited in studies of younger lake sediments, either ignored or only qualitatively observed, because many NPP are destroyed by standard processing techniques for pollen and embryophyte spores. The palaeoenvironmental potential of palynomorphs, with representatives from all eukaryotic kingdoms as well as cyanobacteria and from all trophic levels in various lacustrine environments, has been recognized by a few Quaternary palynologists in the past few decades. NPP have proven particularly valuable in archaeological and environmental monitoring studies of human impact on freshwater ecosystems, with spores of some fungi and eggs/ egg cases of some flatworms and roundworms associated with feces of humans and livestock, and the acid-resistant remains of various life stages of cyanobacteria, algae, and their aquatic consumers responding to increased turbidity and nutrient influx associated with permanent human settlements, particularly those associated with agricultural activity. Descriptions of NPP commonly encountered in Quaternary lake sediments and case studies illustrating applications to various research questions should encourage more palynologists that ‘Quaternary non-pollen palynomorphs' deserve our attention!’, to quote Prof. Bas van Geel, undisputed Father of NPP Research.Supplementary material at https://doi.org/10.6084/m9.figshare.c.5244661

scholarly journals SLR, GRACE and Swarm Gravity Field Determination and Combination

2019 ◽  
Vol 11 (8) ◽  
pp. 956 ◽  
Author(s):  
Ulrich Meyer ◽  
Krzysztof Sosnica ◽  
Daniel Arnold ◽  
Christoph Dahle ◽  
Daniela Thaller ◽  
...  
Keyword(s):  
Mass Transport ◽  
Gravity Field ◽  
Large Scale ◽  
Mass Gain ◽  
Normal Equation ◽  
Polar Regions ◽  
Swarm Satellites ◽  
Gravity Fields ◽  
Long Time ◽  
Gravity Field Determination

Satellite gravimetry allows for determining large scale mass transport in the system Earth and to quantify ice mass change in polar regions. We provide, evaluate and compare a long time-series of monthly gravity field solutions derived either by satellite laser ranging (SLR) to geodetic satellites, by GPS and K-band observations of the GRACE mission, or by GPS observations of the three Swarm satellites. While GRACE provides gravity signal at the highest spatial resolution, SLR sheds light on mass transport in polar regions at larger scales also in the pre- and post-GRACE era. To bridge the gap between GRACE and GRACE Follow-On, we also derive monthly gravity fields using Swarm data and perform a combination with SLR. To correctly take all correlations into account, this combination is performed on the normal equation level. Validating the Swarm/SLR combination against GRACE during the overlapping period January 2015 to June 2016, the best fit is achieved when down-weighting Swarm compared to the weights determined by variance component estimation. While between 2014 and 2017 SLR alone slightly overestimates mass loss in Greenland compared to GRACE, the combined gravity fields match significantly better in the overlapping time period and the RMS of the differences is reduced by almost 100 Gt. After 2017, both SLR and Swarm indicate moderate mass gain in Greenland.

scholarly journals Multiple Stressors Determine Community Structure and Estimated Function of River Biofilm Bacteria

2020 ◽  
Vol 86 (12) ◽  
Author(s):  
Ferran Romero ◽  
Vicenç Acuña ◽  
Sergi Sabater
Keyword(s):  
Bacterial Community ◽  
Community Composition ◽  
Bacterial Communities ◽  
Pesticide Exposure ◽  
Multiple Stressors ◽  
Bacterial Community Composition ◽  
Freshwater Ecosystems ◽  
Low Flow ◽  
Hydrological Stress ◽  
The Individual

ABSTRACT Freshwater ecosystems are exposed to multiple stressors, but their individual and combined effects remain largely unexplored. Here, we investigated the response of stream biofilm bacterial communities to warming, hydrological stress, and pesticide exposure. We used 24 artificial streams on which epilithic (growing on coarse sediments) and epipsammic (growing on fine sediments) stream biofilms were maintained. Bacterial community composition and estimated function of biofilms exposed during 30 days to individual and combined stressors were assessed using 16S rRNA gene metabarcoding. Among the individual effects by stressors, hydrological stress (i.e., a simulated low-flow situation) was the most relevant, since it significantly altered 57% of the most abundant bacterial taxa (n = 28), followed by warming (21%) and pesticide exposure (11%). Regarding the combined effects, 16% of all stressor combinations resulted in significant interactions on bacterial community composition and estimated function. Antagonistic responses prevailed (57 to 89% of all significant interactions), followed by synergisms (11 to 43%), on specific bacterial taxa, indicating that multiple-stressor scenarios could lead to unexpected shifts in the community composition and associated functions of riverine bacterial communities. IMPORTANCE Freshwater ecosystems such as rivers are of crucial importance for human well-being. However, human activities result in many stressors (e.g., toxic chemicals, increased water temperatures, and hydrological alterations) cooccurring in rivers and streams worldwide. Among the many organisms inhabiting rivers and streams, bacteria are ecologically crucial; they are placed at the base of virtually all food webs and they recycle the organic matter needed for bigger organisms. Most of these bacteria are in close contact with river substratum, where they form the biofilms. There is an urgent need to evaluate the effects of these stressors on river biofilms, so we can anticipate future environmental problems. In this study, we experimentally exposed river biofilms to a pesticide mixture, an increase in water temperature and a simulated low-flow condition, in order to evaluate the individual and joint effects of these stressors on the bacterial community composition and estimated function.

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