DECOMPOSITION OF 2,2-DICHLOROPROPIONIC ACID BY SOIL BACTERIA

1959 ◽  
Vol 5 (3) ◽  
pp. 255-260 ◽  
Author(s):  
Lyman A. Magee ◽  
Arthur R. Colmer
Keyword(s):  
Carbon Source ◽  
Liquid Medium ◽  
Soil Bacteria ◽  
Sole Carbon Source ◽  
Solid Medium ◽  
Chloride Ion ◽  
Inhibitory Effect ◽  
Mineral Salts ◽  
Selective Media ◽  
Enrichment Techniques

Eight bacteria capable of decomposing 2,2-dichloropropionate (dalapon) were isolated from soil by means of enrichment techniques and selective media. The decomposition was demonstrated by the clearing of a solid medium containing mineral salts, dalapon, and CaCO3; by a lowering of the pH of a liquid medium containing dalapon as the carbon source; by the increase in chloride ion in the liquid medium; and by the consumption of oxygen by three of the isolates when dalapon was the sole carbon source. Six of these were tentatively classified as Agrobacterium and two were tentatively classified as Pseudomonas, although there was much overlapping of characteristics. These organisms and many unidentified actinomycetes, molds, and bacteria, including a Micrococcus species, overcame the inhibitory effect of dalapon on an agar-decomposing bacterium when grown on the same plate.

scholarly journals Bacterial metabolism of 2,4-dichlorophenoxyacetate

1971 ◽  
Vol 122 (4) ◽  
pp. 543-551 ◽  
Author(s):  
W. C. Evans ◽  
B. S. W. Smith ◽  
H. N. Fernley ◽  
J. I. Davies
Keyword(s):  
Carbon Source ◽  
Liquid Medium ◽  
Aromatic Ring ◽  
Sole Carbon Source ◽  
Major Metabolite ◽  
Bacterial Metabolism ◽  
Mineral Salts ◽  
Ring Fission ◽  
Unstable Compound

1. Two Pseudomonas strains isolated from soil metabolized 2,4-dichlorophenoxyacetate (2,4-D) as sole carbon source in mineral salts liquid medium. 2. 2,4-Dichlorophenoxyacetate cultures of Pseudomonas I (Smith, 1954) contained 2,4-dichlorophenol, 2-chlorophenol, 3,5-dichlorocatechol and α-chloromuconate, the last as a major metabolite. 3. Dechlorination at the 4(p)-position of the aromatic ring must therefore take place at some stages before ring fission. 4. Pseudomonas N.C.I.B. 9340 (Gaunt, 1962) cultures metabolizing 2,4-dichlorophenoxyacetate contained 2,4-dichloro-6-hydroxyphenoxyacetate, 2,4-dichlorophenol, 3,5-dichlorocatechol and an unstable compound, probably αγ-dichloromuconate. 5. Cell-free extracts of the latter organism grown in 2,4-dichlorophenoxyacetate cultures contained an oxygenase that converted 3,5-dichlorocatechol into αγ-dichloromuconate, a chlorolactonase that in the presence of Mn2+ ions converted the dichloromuconate into γ-carboxymethylene-α-chloro-Δαβ-butenolide, and a delactonizing enzyme that gave α-chloromaleylacetate from this lactone. 6. Pathways of metabolism of 2,4-dichlorophenoxyacetate are discussed.

scholarly journals Isolation and Characterization of a Novel p,p’-DDT-Degrading Bacterium: Aeromonas sp. Strain MY1 from Agricultural Soil

2020 ◽  
pp. 12-22
Author(s):  
Y. Murtala ◽  
B. C. Nwanguma ◽  
L. U. S. Ezeanyika
Keyword(s):  
Carbon Source ◽  
16S Rrna ◽  
Agricultural Soil ◽  
Sole Carbon Source ◽  
Phylogenetic Analyses ◽  
Inhibitory Effect ◽  
Aerobic Conditions ◽  
Degrading Bacterium ◽  
Isolation And Characterization

Background: Despite the banned on the use of dichlorodiphenyltrichloroethane (DDT) and other Persistent Organic Pollutants (POPs) by the Stockholm Convention for their toxicity, emerging shreds of evidence have indicated that DDT is, however, still in use in developing countries. This might increase the global burden of DDT contamination and its hazardous effects. Aim: This study focused on the isolation and characterization of p,p’-DDT-degrading bacterium from a tropical agricultural soil. Methodology: Standard isolation procedure was used for the screening and isolation of the strain. The 16S rRNA and phylogenetic analyses were used to identify the isolate and established protocols were followed to characterize the strain. Results: A new strain belonging to the genus Aeromonas was isolated from agricultural soil using minimal salt-p,p’-DDT enrichment medium. The 16S rRNA sequencing was used to identify the strain and the partial sequence was deposited in the NCBI GenBank as Aeromonas sp. Strain MY1. This mesophilic isolate was capable of utilizing up to 50 mgL-1 of p,p’-DDT as the sole carbon source at an optimum pH of 7.5 and optimum temperature of 35 °C within 120 h under aerobic conditions. Fe2+ (0.2 mgL-1) demonstrated a stimulatory effect on the p,p’-DDT degradation capacity by the strain MY1. However, Zn, Cu, Pb, Hg, Ag and Cr ions have demonstrated various patterns of inhibitory effect on the p,p’-DDT degradation capacity of the isolate at 0.2 mgL-1. The strain MY1 could be a promising candidate for the bioremediation of p,p’-DDT contaminant. Conclusion: Aeromonas sp. strain MY1 was capable of utilizing p,p’-DDT as a sole carbon source under aerobic conditions. The utilization capacity of the strain was influenced by some heavy metals. Fe was found to enhance the p,p’-DDT utilization capacity of the isolate at a lower concentration. While Zn, Cu, Pb, Hg, Ag and Cr showed various patterns of inhibitory effect.

Selective medium for the isolation and enumeration of Mycobacterium avium-intracellulare and M. scrofulaceum

1986 ◽  
Vol 32 (1) ◽  
pp. 10-14 ◽  
Author(s):  
Karen L. George ◽  
Joseph O. Falkinham III
Keyword(s):  
Carbon Source ◽  
Mycobacterium Avium ◽  
Sole Carbon Source ◽  
Natural Waters ◽  
Tween 80 ◽  
Selective Medium ◽  
Selective Isolation ◽  
Mineral Salts ◽  
Mycobacterium Avium Intracellulare

A medium for the selective isolation and enumeration of Mycobacterium avium-intracellulare and M. scrofulaceum (MAIS) was developed, based upon the ability of these mycobacteria to utilize Tween 80 as sole carbon source and grow optimally at pH 5.5 on a simple mineral salts medium. Representative MAIS strains had higher efficiencies of plating on the Tween 80 medium compared with Middlebrook 7H10. It was shown that nonmycobacterial organisms in natural waters had lower efficiencies of plating on the Tween 80 medium and smaller colonies, thus allowing direct isolation and enumeration of the slowly growing mycobacteria without overgrowth.

Acidobacteria from oligotrophic soil from the Cerrado can grow in a wide range of carbon source concentrations

2013 ◽  
Vol 59 (11) ◽  
pp. 746-753 ◽  
Author(s):  
Virgilio Hipólito Lemos de Castro ◽  
Luis Felipe Schroeder ◽  
Betania Ferraz Quirino ◽  
Ricardo Henrique Kruger ◽  
Cristine Chaves Barreto
Keyword(s):  
Carbon Source ◽  
16S Rrna ◽  
Growth Rates ◽  
Carboxymethyl Cellulose ◽  
Sole Carbon Source ◽  
Solid Medium ◽  
Colloidal Chitin ◽  
Brazilian Cerrado ◽  
Liquid Media ◽  
Wide Range

Soils from the Brazilian Cerrado are nutrient-poor, acidic, and aluminum-rich. A previous study revealed that members of the phylum Acidobacteria were predominant in these oligotrophic soils. Five acidobacteria from Cerrado soil were isolated on VL-55 medium containing 0.05% of xylan as carbon source. All isolates belong to the Acidobacteria subdivision 1, and their 16S rRNA showed similarities of 94.2%–96% with Acidobacterium capsulatum or 98.6% with Edaphobacter aggregans. All isolates were able to sustain growth in a wide range of carbon source concentrations. Growth occurred in all concentrations of arabinose, dextrose, and xylose; only one isolate did not grow on fructose. Isolates grew poorly on N-acetyl-d-glucosamine at all concentrations tested. In general, increasing concentrations of these monosaccharides did not inhibit growth rates. Isolates exhibited growth on solid medium containing xylan, carboxymethyl cellulose, and colloidal chitin; however, growth was observed on solid medium that did not contain these polysaccharides. These isolates may be able to use the solidifying agents tested (gellan gum or agar) as carbon source. This interpretation is supported by the absence of growth in liquid media containing chitin or carboxymethyl cellulose at 0.05% as sole carbon source, whereas growth in the same conditions using xylan was confirmed.

Growth of Graphium sp. on natural gas

1969 ◽  
Vol 15 (10) ◽  
pp. 1231-1236 ◽  
Author(s):  
J. E. Zajic ◽  
B. Volesky ◽  
Angela Wellman
Keyword(s):  
Carbon Source ◽  
Natural Gas ◽  
Continuous Culture ◽  
Mixed Culture ◽  
Continuous Cultivation ◽  
Dry Weight ◽  
Mineral Salts ◽  
Ambient Temperatures ◽  
Acid Tolerant ◽  
Enrichment Techniques

A fungus which grows well on a mineral salts solution with natural gas as the carbon source is described and provisionally identified as a Graphium species. Its taxonomic relation to several genera is presented. This organism was isolated from sewage after selection by enrichment techniques and continuous culture. The fermentor was operated at ambient temperatures, 28 °C ± 2, at a volume of 10 liters with a dilution rate of 10 liters/4 days to 10 liters/1.7 days. Coty's mineral salts medium gave the highest tissue yield. When the pH of the incoming mineral salts medium was decreased stepwise from 7.0 to 5.0 the pH of the reactor became self-adjusting, varying from around 2.7 to 3.5, and the dry weight of microbial tissue obtained varied from 65 to 275 mg/h. Also present in the continuous culture was an acid tolerant bacterium, which, when isolated, grew well on natural gas, methanol, and ethanol, and a strain of Trichoderma, which, when isolated, did not use natural gas as a carbon source. In mixed culture the Trichoderma is thought to grow on metabolites produced by either or both the Graphium and the acid-tolerant bacterium during oxidation of natural gas. The nature of the relationship is being investigated. The mixed culture has been under continuous cultivation for 18 months.

scholarly journals Metabolism of 4-chloro-2-methylphenoxyacetate by a soil pseudomonad. Preliminary evidence for the metabolic pathway

1971 ◽  
Vol 122 (4) ◽  
pp. 519-526 ◽  
Author(s):  
J. K. Gaunt ◽  
W. C. Evans
Keyword(s):  
Carbon Source ◽  
Liquid Medium ◽  
Metabolic Pathway ◽  
Sole Carbon Source ◽  
Preliminary Evidence ◽  
Tentative Identification

1. A pseudomonad capable of utilizing the herbicide 4-chloro-2-methylphenoxyacetate as a sole carbon source was isolated from soil and cultured in liquid medium. 2. Analysis of induction patterns of 4-chloro-2-methylphenoxyacetate-grown cells suggests that 5-chloro-o-cresol and 5-chloro-3-methylcatechol are early intermediates in the oxidation of 4-chloro-2-methylphenoxyacetate. Cells were not adapted to oxidize 4-chloro-6-hydroxy-2-methylphenoxyacetate. 3. In culture, 4-chloro-2-methylphenoxyacetate rapidly disappeared and the chlorine in the molecule was quantitatively released as Cl− ion. 4. A lactone (γ-carboxymethylene-α-methyl-Δαβ-butenolide) was isolated from cultures and established as an intermediate. 5. The following metabolic pathway is suggested: 4-chloro-2-methylphenoxyacetate → 5-chloro-o-cresol → 5-chloro-3-methylcatechol → cis–cis-γ-chloro-α-methylmuconate → γ-carboxymethylene-α-methyl-Δαβ-butenolide → γ-hydroxy-α-methylmuconate. 6. The tentative identification of 5-chloro-o-cresol, a γ-chloro-α-methylmuconate and γ-hydroxy-α-methylmuconate in culture extracts supports this scheme. However, the catechol was never observed to accumulate in cultures. 7. The detection of 4-chloro-6-hydroxy-2-methylphenoxyacetate, 2-methyl-phenoxyacetate, a dehalogenated cresol and oxalate in culture extracts is discussed in relation to the proposed metabolic pathway.

scholarly journals Isolation and Potential Testing of North Sumatera Berastagi Agricultural Soil In Degrading Marshal Insecticide With Carbosulfan Active Material

2020 ◽  
Vol 2 (02) ◽  
pp. 147-156
Author(s):  
Nunuk Priyani
Keyword(s):  
Carbon Source ◽  
Agricultural Soil ◽  
Sole Carbon Source ◽  
Active Material ◽  
Bacterial Isolates ◽  
Selective Media

The isolation of bacteria from Berastagi agricultural soil North Sumatera has been done. The aim is to evaluate their ability in degrading carbosulfan. Sixteen bacterial isolates were obtained using selective media Bushnel Hass Agar (BHA) containing 12 ppm of carbosulfan. The parameters observed were the growth of isolates, biosurfactant activity, biosurfactant concentration, and the residue of carbosulfan after 21 days of incubation. The result showed that all isolates were able to degrade carbosulfan as the sole carbon source. Two isolates namely JBM 3 (isolate from citrus agricultural soil Berastagi) and KBM 1 (isolate from cabbage agricultural soil Berastagi) were selected for further test to determine their ability to degrade carbosulfan. The results showed that both of the isolates were able to degrade carbosulfan. Compare to control, isolate JBM 3 was able to decrease the concentration of carbosulfan by 33.33%, while isolate KBM 1 was able to reduce carbosulfan concentration up to 40.47%.

Biodegradation of phenol and monochlorophenols by yeast Rhodotorula glutinis

1994 ◽  
Vol 30 (9) ◽  
pp. 59-66 ◽  
Author(s):  
Keiko Katayama-Hirayama ◽  
Shusaku Tobita ◽  
Kimiaki Hirayama
Keyword(s):  
Carbon Source ◽  
Yeast Strain ◽  
Sole Carbon Source ◽  
Rhodotorula Glutinis ◽  
Chloride Ion ◽  
Chloride Ions ◽  
Cell Cultivation ◽  
Ms Analysis ◽  
Ring Fission

Biodegradation of phenol and monochlorophenols (CPs) by a yeast strain of Rhodotorula glutinis was examined. The strain completely degraded 5 mM of phenol and utilized phenol as a sole carbon source. The strain may degrade phenol by the “ortho” type of ring fission because muconolactone was observed in the cultured broth. 3-Chlorophenol (3-CP) and 4-chlorophenol (4-CP) were well degraded and stoichiometric release of chloride ion was observed, but degradation of 2-chlorophenol was low with a small quantity of chloride ions. Biodegradability of 3-CP and 4-CP was increased by the addition of phenol or CPs to the medium at the cell cultivation. Since 4-chlorocatechol and maleylacetic acid were determined as metabolites of 3-CP and 4-CP by GC/MS analysis, dechlorination may take place between the formation of 4-chlorocatechol and maleylacetic acid.

INTERRELATIONSHIPS BETWEEN THE TRICARBOXYLIC ACID AND GLYOXYLATE CYCLES STUDIED WITH BACTERIAL AUXOTROPHS

1962 ◽  
Vol 8 (2) ◽  
pp. 241-247 ◽  
Author(s):  
Henry C. Reeves ◽  
Samuel J. Ajl
Keyword(s):  
Carbon Source ◽  
Sole Carbon Source ◽  
Tricarboxylic Acid Cycle ◽  
Tricarboxylic Acid ◽  
Mineral Salts ◽  
Glyoxylate Bypass ◽  
Acid Cycle ◽  
E Coli ◽  
Acetate Medium ◽  
Metabolic Significance

An autotroph of Escherichia coli, E26-6, which is unable to grow aerobically in a simple mineral-salts medium with either acetate, glutamate, isocitrate, or any one of the C4 dicarboxylic acid intermediates of the tricarboxylic acid cycle as sole carbon source, has been investigated. The mutant is able to grow, however, in a mineral-salts acetate medium supplemented with any one of the above acids. The specific activities of the tricarboxylic acid cycle and glyoxylate bypass enzymes, with the exception of alpha-ketoglutaric dehydrogenase, which is greatly impaired in the auxotroph, were found to be essentially the same in both the parent and the mutant. Thus, the glyoxylate bypass alone is not capable of supplying sufficient C4 intermediates to allow the growth of E. coli on acetate. Further, there appear to be no other metabolic pathways leading to C4 production, which are of major metabolic significance during growth on acetate, other than the tricarboxylic and glyoxylate cycles. Finally, in conjunction with the tricarboxylic acid cycle, the malate synthetase and isocitritase reactions provide a mechanism which enables E. coli to grow on a medium containing acetate as the sole carbon source.

Cell division in a species of Erwinia. XI Some aspects of the carbon and nitrogen nutrition of Erwinia species

1968 ◽  
Vol 14 (11) ◽  
pp. 1217-1224 ◽  
Author(s):  
Mary M. Grula ◽  
R. W. Smith ◽  
C. F. Parham ◽  
E. A. Grula
Keyword(s):  
Cell Division ◽  
Carbon Source ◽  
Aspartic Acid ◽  
Ammonium Chloride ◽  
Sole Carbon Source ◽  
Nitrogen Nutrition ◽  
Krebs Cycle ◽  
Sole Source ◽  
Mineral Salts ◽  
Acid Media

The species of Erwinia used in cell division studies (Grula 1960a) will grow on L- or D-aspartic acid, but no other amino acid, as a sole source of carbon, nitrogen, and energy. Ammonia is utilizable as a sole source of nitrogen; in this case the rate and extent of growth are significantly influenced by the carbon source. Of all compounds tested, malic acid supports the most rapid and abundant growth in an ammonium chloride – mineral salts medium. Added pantothenate often stimulates growth in ammonium chloride media, but not in aspartic acid media. Growth in an ammonium chloride – glucose – salts medium is rather slow and limited. Marked stimulation occurs by supplementation with intermediates of the Krebs cycle, even though the compound supports little or no growth as a sole carbon source. Neither L-glutamic acid nor α-ketoglutaric acid supports growth as a sole carbon source; this is believed to result from impermeability of the cell to these compounds.

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