scholarly journals Identification and Pathogenicity of Fungal Pathogens Associated with Stem End Rots of Avocado Fruits in Kenya

2020 ◽  
Vol 2020 ◽  
pp. 1-8
Author(s):  
E. K. Wanjiku ◽  
J. W. Waceke ◽  
B. W. Wanjala ◽  
J. N. Mbaka

Losses associated with stem end rot (SER) of avocado fruits have been reported in all avocado growing regions of the world. In Kenya, mature avocado fruits present SER symptoms during storage and marketing, but the disease causal agent(s) has not been established. This study aimed to identify the fungal pathogen(s) associated with avocado SER in Kenya and evaluate its pathogenicity. Fungal isolates were collected from symptomatic avocado fruits from randomly selected orchards and major markets within Murang'a County, a major avocado growing region in Kenya, between September 2017 and March 2018. A total of 207 and 125 fungal isolates, recovered from orchards and major markets, respectively, were identified morphologically and further confirmed by molecular techniques. The identified isolates were Lasiodiplodia theobromae (39.8%), Neofusicoccum parvum (24.4%), Nectria pseudotrichia (18.4%), Fusarium solani (7.2%), F. oxysporum (5.1%), F. equiseti (3.9%), and Geotricum candidum (1.2%). Geotricum candidum was exclusively recovered from fruits from the market. In the pathogenicity test, L. theobromae, N. parvum, and N. pseudotrichia caused the most severe SER symptoms. Consequently, they were considered to be the major pathogens of SER of avocado fruits in Kenya. To our knowledge, this is the first report of SER pathogen of avocado fruits in Kenya. Given the significant contribution of avocado fruits to household income and foreign exchange in Kenya, this information is significant to further develop management strategies of postharvest loss of avocado fruits in Kenya.

2022 ◽  
Vol 2 ◽  
Author(s):  
Sefinew Tilahun ◽  
Marye Alemu ◽  
Mesfin Tsegaw ◽  
Nega Berhane

Ginger diseases caused by fungal pathogens have become one of the most serious problems causing reduced production around the world. It has also caused a major problem among farmers in different parts of Ethiopia resulting in a huge decline in rhizome yield. However, the exact causative agents of this disease have not been identified in the state. Although there are few studies related to pathogenic fungus identification, molecular level identification of fungal pathogen was not done in the area. Therefore, this study was undertaken to isolate and characterized the fungal causative agent of ginger disease from the diseased plant and the soil samples collected around the diseased plant from Chilga district, Gondar, Ethiopia. Samples from infected ginger plants and the soil around the infected plant were collected. Culturing and purification of isolates were made using Potato Dextrose Agar supplemented with antibacterial agent chloramphenicol. The morphological characterization was done by structural identification of the isolates under the microscope using lactophenol cotton blue stains. Isolated fungi were cultured and molecular identification was done using an internal transcribed spacer (ITS) of ribosomal DNA (rDNA). A total of 15 fungal morphotypes including 11 Aspergillus spp. (73.3%), 2 Penicillium spp. (13.3%), and single uncultured fungus clone S23 were isolated from the samples representing all the plant organs and the soil. Aspergillus spp. (73.3%) was the most common and seems to be the major causative agent. To the best of our knowledge, this is the first report of ginger pathogenic fungi in Ethiopia identified using ITS rDNA molecular techniques. This study will lay foundation for the development of management strategies for fungal diseases infecting ginger.


2019 ◽  
Vol 23 (1) ◽  
pp. 133
Author(s):  
Hendra Hendra ◽  
Arif Wibowo ◽  
Suryanti Suryanti

Cacao is one of the pre-eminent crops plantation with high economic value. Indonesia's cacao beans production is the third largest in the world after Ivory Coast and Ghana. Vascular Streak Dieback (VSD) is one of the important diseases of cacao which caused a decreased yield either in quantity or quality. The disease is caused by the basidiomycete fungus Ceratobasidium theobromae (syn. Oncobasidium theobromae). Spores are carried by wind to spread, infect young leaves and penetrate through natural openings and colonize xylem vessel which could inhibit the transportation system in the plant tissue. There are several fungal pathogens associated with VSD diseases on cacao. This research aimed to study the fungi associate with VSD diseases on cacao in Special Region of Yogyakarta Province. Survey and sampling were conducted in cacao plantations in regencies of Gunungkidul, Kulon Progo, Bantul and Sleman. The severity of VSD disease in the regencies of Gunungkidul and Kulon Progo were high, while in the regencies of Sleman and Bantul were moderate. Eighty eight fungal isolates were isolated from infected petiole and stem. The in vitro pathogenicity test screened 32 fungal isolates causing necrotic and chlorotic symptoms on young healthy cacao leaves with and without wounding. The first symptoms appeared at 8-12 days after inoculation and fungal mycelium could grow at 1−3 days after inoculation. Those isolates collected showed a high diversity of colony morphology. Lasiodiplodia sp., Fusarium sp., Colletotrichum sp., and Pestalotiopsis sp. had been identified based on conidial morphology.


Plant Disease ◽  
2013 ◽  
Vol 97 (12) ◽  
pp. 1580-1584 ◽  
Author(s):  
M. Twizeyimana ◽  
H. Förster ◽  
V. McDonald ◽  
D. H. Wang ◽  
J. E. Adaskaveg ◽  
...  

Stem-end rot of harvested avocado fruit commonly occurs wherever the crop is cultivated. Multiple fungal species have been described as causal agents. To determine the causal pathogens of stem-end rot in California, fungal isolations were conducted from symptomatic fruit, and fungi were identified by morphological and molecular techniques. In 2010 and 2011, a total of 177 isolates were recovered from 290 avocado fruit collected from seven orchards in one of the major avocado growing areas in Southern California. The majority of isolates was identified as Neofusicoccum luteum (65%), with the remainder either as Colletotrichum gloeosporioides (33%) or Phomopsis sp. (2%). In a pathogenicity test, N. luteum caused significantly (P < 0.05) more severe stem-end rot than either C. gloeosporioides or Phomopsis sp. No significant (P > 0.05) differences in stem-end rot severity were observed between inoculations with N. luteum isolated from fruit stem-end rot and N. luteum or N. parvum isolated from branch cankers. This confirms that stem-end rot of avocado can be initiated by fungi causing branch cankers. Although low humidity and rainfall during much of the growing and harvest seasons in California are considered unfavorable conditions for the development of avocado stem-end rot, the identification of the causal pathogens is of value when decays have to be managed during outbreaks, and it stresses the importance of managing branch cankers.


2020 ◽  
Vol 5 (4) ◽  
pp. 286-291
Author(s):  
Ya’u Mukhtar ◽  
Maryam Adamu Muhammad ◽  
Safiyya Maiwada Zubairu ◽  
Aisha Muhammad Galalain ◽  
Umar Muazu Ahmad

Isolation, identification and pathogenicity of fungal organisms responsible for the postharvest spoilage of sweet oranges, cucumber and lettuce at Sharada market in Kano metropolis, Nigeria was carried out in the present study. Samples showing symptoms of rot were collected from the retailers in the market and conveyed to the laboratory using polyethene bags. Small portion from rotten parts were cut and surface sterilized in 1% of Sodium hydrochloride and rinsed in several changes of sterile distilled water. They were plated on Potato Dextrose Agar (PDA) and observed for fungal growth. Identification was done macroscopically and microscopically. For pathogenicity test, healthy sweet oranges, cucumber and lettuce were plugged with pure cultures of the fungal isolates, thus, frequency of occurrence and disease severity of the pathogen were evaluated. Seven fungi namely Rhizopus spp., Aspergillus flavus, Mucor spp., Aspergillus fumigatus, Aspergillus niger, Fusarium oxysporum, Rhizoctonia spp. and Fusarium oxysporum were isolated. Severity of decay ranged from 6.39–46.15% for all fungal isolates, while the controls showed 0%. Pathogenic microorganisms on fruits and vegetables are a potential health hazard to man and animals following ingestion. Proper handling from the farm as well as during storage and the avoidance of mixing of diseased ones with the healthy ones were identified as important factors in preventing loss and health complication at the event of consumption. The use of suitable chemical treatment of the orange is also recommended as means of reducing economic loss due to fungal pathogens. Asian J. Med. Biol. Res. June 2019, 5(4): 286-291


Plant Disease ◽  
2018 ◽  
Vol 102 (1) ◽  
pp. 60-66 ◽  
Author(s):  
Norman Muzhinji ◽  
James W. Woodhall ◽  
Mariette Truter ◽  
Jacquie E. van der Waals

Understanding the contribution of seed tuber- and soilborne inocula of Rhizoctonia solani AG 3-PT in causing potato disease epidemics is an important step in implementing effective management strategies for the pathogen. A 2-year study was conducted to evaluate the contribution of each source of inoculum using an integrative experimental approach combining field trials and molecular techniques. Two distinct sets of genetically marked isolates were used as seed tuberborne and soilborne inocula in a mark-release-recapture experiment. Disease assessments were done during tuber initiation and at tuber harvest. Both inoculum sources were found to be equally important in causing black scurf disease, whereas soilborne inocula appeared to be more important for root and stolon infection, and seedborne inocula contributed more to stem canker. However, seed tuber-transmitted genotypes accounted for 60% of the total recovered isolates when genotyped using three polymerase chain reaction restriction fragment length polymorphism markers. The changes in population structure of the experimental R. solani population over the course of the growing season and across two growing seasons were investigated using eight microsatellite markers. The populations at different sampling times were somewhat genetically differentiated, as indicated by Nei’s gene diversity (0.24 to 0.27) and the fixation index (FST). The proportion of isolates with genotypes that differed from the inoculants ranged from 13 to 16% in 2013 and 2014, respectively, suggesting the possibility of emergence of new genotypes in the field. Because both soilborne and tuberborne inocula are critical, it is important to ensure the use of pathogen-free seed tubers to eliminate seed tuberborne inoculum and the introduction of new genotypes of R. solani for sustainable potato production in South Africa.


Botany ◽  
2009 ◽  
Vol 87 (1) ◽  
pp. 1-9 ◽  
Author(s):  
Nick Reid ◽  
Simon F. Shamoun

Many mistletoe species are pests in agricultural and forest ecosystems throughout the world. Mistletoes are unusual “weeds” as they are generally endemic to areas where they achieve pest status and, therefore, classical biological control and broad-scale herbicidal control are usually impractical. In North American coniferous forests, dwarf mistletoe ( Arceuthobium spp.) infection results in major commercial losses and poses a public liability in recreation settings. Hyperparasitic fungi have potential as biological control agents of dwarf mistletoe, including species which attack shoots, berries, and the endophytic systems of dwarf mistletoe. Development of an inundative biological control strategy will be useful in situations where traditional silvicultural control is impractical or undesirable. In southern Australia, farm eucalypts are often attacked and killed by mistletoes ( Amyema spp.) in grazed landscapes where tree decline and biodiversity loss are major forms of land degradation. Although long-term strategies to achieve a balance between mistletoe and host abundance are promoted, many graziers want short-term options to treat severely infected trees. Recent research has revisited the efficiency and efficacy of silvicultural treatments and selective herbicides in appropriate situations. The results of recent research on these diverse management strategies in North America and Australia are summarized.


Plant Disease ◽  
2019 ◽  
Vol 103 (4) ◽  
pp. 705-710 ◽  
Author(s):  
Martha H. Froelich ◽  
Guido Schnabel

A survey of fungal pathogens causing twig blight on commercial peach trees was conducted in South Carolina in the fall of 2016. Shoots with cankers, pycnidia, and dieback were collected from six locations around the state. Isolates obtained from these samples were identified as Botryosphaeria obtusa, Phomopsis amygdali, Leucostoma persoonii, and Cytospora sp., based on colony morphology, conidia size and shape, and ribosomal DNA sequence analysis. L. persoonii was the most prevalent species and was isolated in five of the six locations, followed by P. amygdali and B. obtusa. The sensitivity of representative isolates of B. obtusa, P. amygdali, and L. persoonii to fungicides of different FRAC codes was evaluated. All species tested were sensitive to thiophanate-methyl (FRAC 1) and pyraclostrobin and azoxystrobin (both FRAC 11), whereas all species were resistant to boscalid and fluopyram (both FRAC 7). P. amygdali and B. obtusa were sensitive to difenoconazole and propiconazole (both FRAC 3), whereas L. persoonii was moderately resistant. L. persoonii was the most virulent species based on expansion of mycelium in the cambium layer of 2-year-old, detached twig pieces. Bacterial spot (BS)-sensitive cultivar ‘O’Henry’ was most susceptible to B. obtusa compared with BS-sensitive ‘Summerprince’, brown rot (BR)-resistant ‘Contender’, and BR-sensitive ‘Coronet’ but was least susceptible to L. persoonii. Coronet was most susceptible to L. persoonii. There were no significant differences between susceptibility of the cultivars to P. amygdali. This study established that L. persoonii is currently the most frequent twig blight pathogen in South Carolina, perhaps owing to its superior fitness. Some fungicides were effective in controlling all twig blight pathogens and may therefore be useful for chemical management strategies. Our study also provides the first evidence that the genetic basis of resistance to BS and BR in peach trees is not necessarily linked to tolerance to wood pathogens.


Plant Disease ◽  
2012 ◽  
Vol 96 (1) ◽  
pp. 148-148 ◽  
Author(s):  
J. Liu ◽  
H. D. Luo ◽  
W. Z. Tan ◽  
L. Hu

Conyza sumatrensis (Asteraceae), an annual or biennial plant, is native to North and South America. It is an invasive, noxious weed that is widespread in southern and southeastern China. It invades farm land and causes great losses to dry land crops, including wheat, corn, and beans. It also reduces biological diversity by crowding out native plants in the infested areas (3,4). During a search for fungal pathogens that could serve as potential biological control agents of C. sumatrensis, a leaf spot disease was observed in 2010 in Chongqing, China. An isolate (SMBC22) of a highly virulent fungus was obtained from diseased leaves. Pathogenicity tests were performed by placing 6-mm-diameter mycelial disks of 7-day-old potato dextrose agar (PDA) cultures of SMBC22 on leaves of 15 healthy greenhouse-grown plants of C. sumatrensis; the same number of control plants was treated with sterile PDA disks. Treated plants were covered with plastic bags for 24 h and maintained in a growth chamber with daily average temperatures of 24 to 26°C, continuous light (3,100 lux), and high relative humidity (>90%). Lesions similar to those observed in the field were first obvious on the SMBC22-inoculated leaves 3 days after inoculation. Symptoms became severe 7 to 9 days after inoculation. Control plants remained healthy. The fungus was reisolated from inoculated and diseased leaves and it was morphologically the same as SMBC22. The pathogenicity test was conducted three times. A survey of 10 southern and southeastern Chinese provinces revealed that the disease was widespread and it attacked leaves and stems of seedlings and mature plants of C. sumatrensis. Lesions on leaves were initially small, circular, and water soaked. The typical lesion was ovoid or fusiform, dark brown, and surrounded by a yellow halo. The spots coalesced to form large lesions and plants were often completely blighted. Fungal colonies of SMBC22 on PDA plates were initially white and turned dark gray. Colonies were circular with smooth edges with obvious rings of pycnidia on the surface. Aerial hyphae were short and dense. Pycnidia, black and immersed or semi-immersed in the medium, were visible after 12 days of incubation. Pycnidia were 72 to 140 μm in diameter. Conidia were produced in the pycnidia and were hyaline, unicellular, ellipsoidal, and 4.4 to 6.1 × 1.6 to 2.2 μm. To confirm identification of the fungus, genomic DNA was extracted from mycelia of a 7-day-old culture on PDA at 25°C (2). The internal transcribed spacer (ITS) gene of rDNA was amplified using primers ITS4/ITS5. The gene sequence was 524 bp long and registered in NCBI GenBank (No. HQ645974). BLAST analysis showed that the current sequence had 99% homology to an isolate of Phoma macrostoma (DQ 404792) from Cirsium arvense (Canada thistle) in Canada and reported to cause chlorotic symptoms on that host plant (1). To our knowledge, this is the first report of P. macrostoma causing disease on C. sumatrensis in China. P. macrostoma, thought of as a biocontrol agent of broadleaf weeds in Canada, has been patented in the United States. The current isolate of P. macrostoma is considered as a potential biocontrol agent of C. sumatrensis. References: (1) P. R. Graupner et al. J. Nat. Prod. 66:1558, 2004. (2) S. Takamatsu et al. Mycoscience 42:135, 2001. (3) W. Z. Tan et al. Page 177 in: Manual of Emergency Control Technology Invasive Pests in China. G. L. Zhang, ed. Science Press, Beijing, 2010. (4) C. Wang et al. J. Wuhan Bot. Res. 28:90, 2010.


2021 ◽  
Vol 12 ◽  
Author(s):  
Demetrio Marcianò ◽  
Valentina Ricciardi ◽  
Elena Marone Fassolo ◽  
Alessandro Passera ◽  
Piero Attilio Bianco ◽  
...  

Downy mildew, caused by the oomycete Plasmopara viticola, is one of the diseases causing the most severe economic losses to grapevine (Vitis vinifera) production. To date, the application of fungicides is the most efficient method to control the pathogen and the implementation of novel and sustainable disease control methods is a major challenge. RNA interference (RNAi) represents a novel biotechnological tool with a great potential for controlling fungal pathogens. Recently, a candidate susceptibility gene (VviLBDIf7) to downy mildew has been identified in V. vinifera. In this work, the efficacy of RNAi triggered by exogenous double-stranded RNA (dsRNA) in controlling P. viticola infections has been assessed in a highly susceptible grapevine cultivar (Pinot noir) by knocking down VviLBDIf7 gene. The effects of dsRNA treatment on this target gene were assessed by evaluating gene expression, disease severity, and development of vegetative and reproductive structures of P. viticola in the leaf tissues. Furthermore, the effects of dsRNA treatment on off-target (EF1α, GAPDH, PEPC, and PEPCK) and jasmonic acid metabolism (COI1) genes have been evaluated. Exogenous application of dsRNA led to significant reductions both in VviLBDIf7 gene expression, 5 days after the treatment, and in the disease severity when artificial inoculation was carried out 7 days after dsRNA treatments. The pathogen showed clear alterations to both vegetative (hyphae and haustoria) and reproductive structures (sporangiophores) that resulted in stunted growth and reduced sporulation. Treatment with dsRNA showed signatures of systemic activity and no deleterious off-target effects. These results demonstrated the potential of RNAi for silencing susceptibility factors in grapevine as a sustainable strategy for pathogen control, underlying the possibility to adopt this promising biotechnological tool in disease management strategies.


2021 ◽  
Author(s):  
Michael Bradshaw ◽  
Holly Packard Bartholomew ◽  
Dylan Hendricks ◽  
Autumn Maust ◽  
Wayne Jurick II

Fungicides are the primary tools to control a wide range of postharvest fungal pathogens. Fungicide resistance is a widespread problem that has reduced fungicide efficacy. Resistance to FRAC 1 chemistries are associated with mutations in amino acid position 198 in the β-tubulin gene. In the current study we conducted a meta-analysis of β-tubulin sequences to infer temporal, spatial, plant host and pathogen genus patterns of fungicide resistance in postharvest fungal pathogens. In total, data was acquired from 2647 specimens from 12 genera of fungal phytopathogens residing in 53 countries, on over 200 hosts collected between 1926-2020. The specimens containing a position 198 mutation were globally distributed in a variety of pathosystems. Analyses showed that there is an association between the mutation and the year an isolate was collected, the pathogen genus, the pathogen host and the collection region. Interestingly, fungicide resistant β-tubulin genotypes have been in a decline since their peak between 2005-2009. FRAC 1 fungicide usage data followed a similar pattern in that applications have been in a decline since their peak between 1997 and 2003. The data shows that, with the reduction of selection pressure, FRAC 1 fungicide resistance in fungal populations will decline within 5-10 years. Based on this line of evidence, we contend that a β-tubulin position 198 mutation has uncharacterized fitness cost(s) on fungi in nature. The compiled dataset can inform end users on the regions and hosts that are most prone to contain resistant pathogens and assist decisions concerning fungicide resistant management strategies.


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