Soft Rot and Wood Pseudomorphs in an Ancient Coffin (700 Bc) From Tumulus Mm at Gordion, Turkey

IAWA Journal ◽  
1992 ◽  
Vol 13 (2) ◽  
pp. 201-213 ◽  
Author(s):  
Robert A. Blanchette ◽  
Elizabeth Simpson

An 8th century B. C. tomb at Gordion, Turkey, thought to be the burial site of the legendary Phrygian King Midas, contained a massive deteriorated log coffin, furniture, bronze vessels and many other works of an. This paper describes the micromorphological condition of the wooden coffin and the forms of deterioration that were found. Soft rot decay was the only form of biological degradation that occurred throughout the coffin. Advanced stages of soft rot were evident within the wood cells with numerous soft rot cavities located in the secondary wall layers. In areas of the coffin immediately adjacent to iron bars and nails, soft rot cavities were not observed. Instead, iron corrosion products were evident within these cells, and pseudomorphs (iron replicas) of wood cells were observed. A nonbiological type of cell wall deterioration was apparent in wood where iron corrosion products were present. These iron replicas provided an unusual opportunity to observe reverse images of tracheid cell walls. The importance to wood anatomists in recognising the morphological characteristics of soft rot also is discussed so that misidentification of ancient deteriorated wood can be avoided.

2004 ◽  
Vol 70 (3) ◽  
pp. 1328-1335 ◽  
Author(s):  
Robert A. Blanchette ◽  
Benjamin W. Held ◽  
Joel A. Jurgens ◽  
Douglas L. McNew ◽  
Thomas C. Harrington ◽  
...  

ABSTRACT Three expedition huts in the Ross Sea region of Antarctica, built between 1901 and 1911 by Robert F. Scott and Ernest Shackleton, sheltered and stored the supplies for up to 48 men for 3 years during their explorations and scientific investigation in the South Pole region. The huts, built with wood taken to Antarctica by the early explorers, have deteriorated over the past decades. Although Antarctica has one of the coldest and driest environments on earth, microbes have colonized the wood and limited decay has occurred. Some wood in contact with the ground contained distinct microscopic cavities within secondary cell walls caused by soft rot fungi. Cadophora spp. could be cultured from decayed wood and other woods sampled from the huts and artifacts and were commonly associated with the soft rot attack. By using internal transcribed spacer sequences of ribosomal DNA and morphological characteristics, several species of Cadophora were identified, including C. malorum, C. luteo-olivacea, and C. fastigiata. Several previously undescribed Cadophora spp. also were found. At the Cape Evans and Cape Royds huts, Cadophora spp. commonly were isolated from wood in contact with the ground but were not always associated with soft rot decay. Pure cultures of Cadophora used in laboratory decay studies caused dark staining of all woods tested and extensive soft rot in Betula and Populus wood. The presence of Cadophora species, but only limited decay, suggests there is no immediate threat to the structural integrity of the huts. These fungi, however, are widely found in wood from the historic huts and have the capacity to cause extensive soft rot if conditions that are more conducive to decay become common.


2019 ◽  
Vol 40 (1) ◽  
pp. 73-89 ◽  
Author(s):  
Manzar Abbas ◽  
Ilona Peszlen ◽  
Rui Shi ◽  
Hoon Kim ◽  
Rui Katahira ◽  
...  

Abstract Cellulose synthase A genes (CesAs) are responsible for cellulose biosynthesis in plant cell walls. In this study, functions of secondary wall cellulose synthases PtrCesA4, PtrCesA7-A/B and PtrCesA8-A/B were characterized during wood formation in Populus trichocarpa (Torr. & Gray). CesA RNAi knockdown transgenic plants exhibited stunted growth, narrow leaves, early necrosis, reduced stature, collapsed vessels, thinner fiber cell walls and extended fiber lumen diameters. In the RNAi knockdown transgenics, stems exhibited reduced mechanical strength, with reduced modulus of rupture (MOR) and modulus of elasticity (MOE). The reduced mechanical strength may be due to thinner fiber cell walls. Vessels in the xylem of the transgenics were collapsed, indicating that water transport in xylem may be affected and thus causing early necrosis in leaves. A dramatic decrease in cellulose content was observed in the RNAi knockdown transgenics. Compared with wildtype, the cellulose content was significantly decreased in the PtrCesA4, PtrCesA7 and PtrCesA8 RNAi knockdown transgenics. As a result, lignin and xylem contents were proportionally increased. The wood composition changes were confirmed by solid-state NMR, two-dimensional solution-state NMR and sum-frequency-generation vibration (SFG) analyses. Both solid-state nuclear magnetic resonance (NMR) and SFG analyses demonstrated that knockdown of PtrCesAs did not affect cellulose crystallinity index. Our results provided the evidence for the involvement of PtrCesA4, PtrCesA7-A/B and PtrCesA8-A/B in secondary cell wall formation in wood and demonstrated the pleiotropic effects of their perturbations on wood formation.


IAWA Journal ◽  
2005 ◽  
Vol 26 (2) ◽  
pp. 161-174 ◽  
Author(s):  
Hisashi Abe ◽  
Ryo Funada

We examined the orientation of cellulose microfibrils (Mfs) in the cell walls of tracheids in some conifer species by field emission-scanning electron microscopy (FE-SEM) and developed a model on the basis of our observations. Mfs depositing on the primary walls in differentiating tracheids were not well-ordered. The predominant orientation of the Mfs changed from longitudinal to transverse, as the differentiation of tracheids proceeded. The first Mfs to be deposited in the outer layer of the secondary wall (S1 layer) were arranged as an S-helix. Then the orientation of Mfs changed gradually, with rotation in the clockwise direction as viewed from the lumen side of tracheids, from the outermost to the innermost S1 layer. Mfs in the middle layer of the secondary wall (S2 layer) were oriented in a steep Z-helix with a deviation of less than 15° within the layer. The orientation of Mfs in the inner layer of the secondary wall (S3 layer) changed, with rotation in a counterclockwise direction as viewed from the lumen side, from the outermost to the innermost S3 layer. The angle of orientation of Mfs that were deposited on the innermost S3 layer varied among tracheids from 40° in a Z-helix to 20° in an S-helix.


2018 ◽  
Vol 85 (3) ◽  
Author(s):  
Wafa M. Kooli ◽  
Thomas Junier ◽  
Migun Shakya ◽  
Mathilde Monachon ◽  
Karen W. Davenport ◽  
...  

ABSTRACTUsing bacteria to transform reactive corrosion products into stable compounds represents an alternative to traditional methods employed in iron conservation. Two environmentalAeromonasstrains (CA23 and CU5) were used to transform ferric iron corrosion products (goethite and lepidocrocite) into stable ferrous iron-bearing minerals (vivianite and siderite). A genomic and transcriptomic approach was used to analyze the metabolic traits of these strains and to evaluate their pathogenic potential. Although genes involved in solid-phase iron reduction were identified, key genes present in other environmental iron-reducing species are missing from the genome of CU5. Several pathogenicity factors were identified in the genomes of both strains, but none of these was expressed under iron reduction conditions. Additionalin vivotests showed hemolytic and cytotoxic activities for strain CA23 but not for strain CU5. Both strains were easily inactivated using ethanol and heat. Nonetheless, given a lesser potential for a pathogenic lifestyle, CU5 is the most promising candidate for the development of a bio-based iron conservation method stabilizing iron corrosion. Based on all the results, a prototype treatment was established using archaeological items. On those, the conversion of reactive corrosion products and the formation of a homogenous layer of biogenic iron minerals were achieved. This study shows how naturally occurring microorganisms and their metabolic capabilities can be used to develop bio-inspired solutions to the problem of metal corrosion.IMPORTANCEMicrobiology can greatly help in the quest for a sustainable solution to the problem of iron corrosion, which causes important economic losses in a wide range of fields, including the protection of cultural heritage and building materials. Using bacteria to transform reactive and unstable corrosion products into more-stable compounds represents a promising approach. The overall aim of this study was to develop a method for the conservation and restoration of corroded iron items, starting from the isolation of iron-reducing bacteria from natural environments. This resulted in the identification of a suitable candidate (Aeromonassp. strain CU5) that mediates the formation of desirable minerals at the surfaces of the objects. This led to the proof of concept of an application method on real objects.


Plant Disease ◽  
2020 ◽  
Author(s):  
Zeng-Liang LIU ◽  
Shuangyun Zhou ◽  
Wenlong Zhang ◽  
Shengjin Wu ◽  
Xuefeng Chen ◽  
...  

Pleurotus pulmonarius is a popular edible fungus and widely cultivated in many areas of China. In June 2018, yellow rot (more than 10% incidence) was found on the first crop of P. pulmonarius fruiting bodies in a mushroom factory in Nanning, Guangxi Province, China. At first, yellow water-soaked lesions appeared in the infected fruiting bodies. Lesions then spread and purulent tissues were formed. Severe rot induced production of deformed fruiting bodies and offensive odor. Internal sections of the diseased tissue (approximately 0.5 × 0.5 cm) were sterilized in 75% alcohol for 30 s, rinsed three times with sterilized and deionized water, crushed and suspended in sterilized and deionized water. The suspension was spread on the Luria-Bertani (LB) medium. After incubation at 30°C for 2 days, dominant bacterial colonies were oyster white, smooth, convex, and circular. Individual colonies were transferred two times to LB medium using the conventional streak plate techniques to obtain the pure cultures. The cells were gram-negative, short rods, motile, and no capsules or endospores were observed. Using a BoJian Gram-negative bacteria biochemical analysis kit (5 CARDS, Hopebio, Qingdao, China), data were obtained and analyzed, showing that the isolated strain belongs to the Cedecea genus (positive for β-galactosidase, citric acid, arginine, sucrose, mannitol, sorbitol, D-glucose, gelatin hydrolysis and VP test but negative for H2S, urease, oxidase, indole, rhamnose, melibiose, amygdalin, lysine, ornithine, lactose, inositol and arabinose). Amplified 16S rDNA gene sequences (1,424 bp, GenBank accession No. MT925570) of the isolate using the universal primers 27f and 1492r (Lane 1991) exhibited 99.86% identity with Cedecea neteri M006 (CP009458.1). Based on its morphological characteristics, 16S rDNA sequences, and biochemical test results, the strain was identified as C. neteri. Pathogenicity tests for this strain were performed with bacterial suspensions (approximately 1 × 108 CFU/ml) after growing for 24 h in LB medium at 30°C. Mycelia of P. pulmonarius were cultivated for 60 days in plastic bags. Then young fruiting bodies were formed after induced with low temperature stimulation to serve as a host source. The prepared bacterial suspensions were directly sprayed onto the surface of three bags of fruiting bodies; another three bags were sprayed with sterilized and deionized water as negative control. All inoculated fruiting bodies were then incubated at 20°C with 90 to 95% relative humidity. All experiments were repeated three times. After 2 days, all the fruiting bodies inoculated with the bacterial suspensions showed yellow water-soaked lesions, and the normal growth of the fruiting bodies was inhibited. An offensive odor then developed along with a severe soft rot that was similar to the disease symptoms observed under natural conditions. The fruiting bodies of negative control were growing healthily with no symptoms. Koch's postulates were fulfilled by isolating bacteria from lesions on artificially inoculated fruiting bodies that were identical to the original isolates based on morphological characteristics, 16S rDNA sequences and biochemical test results. C. neteri was formally reported as a pathogen to humans that could cause bacteremia (Farmer et al. 1982). Recently, it has also been reported causing soft rot disease on mushrooms of Pholiota nameko (Yan et al. 2018) and yellow sticky disease on mushrooms of Flammulina velutipes (Yan et al. 2019). However, to the best of our knowledge, this is the first report of C. neteri-induced yellow rot disease of P. pulmonarius in China.


1984 ◽  
Vol 62 (12) ◽  
pp. 2644-2649 ◽  
Author(s):  
M. Harche

Using diaminobenzidine as substrate, peroxidase activity was localized in the walls of parenchyma cells and differentiating fibres. In mature fibres and parenchyma a slight activity could be recognized in primary walls only. In parenchyma cells, peroxidase activity was fairly inhibited with heat, potassium cyanide, and aminotriazole, which could indicate the presence of catalase within the cell walls. However, in plasmodesmatal regions peroxidases were- resistant to the above inhibitors. Syringaldazine oxidase activity was present only in the primary wall and the outer part of the secondary wall of differentiating fibres. The parallelism between lignification and peroxidase activity in the secondary walls supports the hypothesis of the involvement of these enzymes in the lignification process.


2009 ◽  
Vol 43 (8) ◽  
pp. 2825-2830 ◽  
Author(s):  
Ferran Seco ◽  
Christoph Hennig ◽  
Joan de Pablo ◽  
Miquel Rovira ◽  
Isabel Rojo ◽  
...  

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