scholarly journals Effect of temperature on the morphological characteristics of Botrytis cinerea and its correlated with the genetic variability

2019 ◽  
Vol 8 (2) ◽  
pp. 37-51
Author(s):  
Elsayed E. Wagih ◽  
Hala Abdel Wahab ◽  
Mohamed R. A. Shehata ◽  
Magda M. Fahmy ◽  
Mahmoud A. Gaber

Grey mold caused by Botrytis cinerea, is known to cause great losses in most vegetable and fruit crops. Fifty-one isolates of B. cinerea were collected from grape (BCG) and strawberry (BCS) grown in different Egyptian locations. Variation among isolates was demonstrated using fenhexamid resistance and genetic approaches. Isolates were classified into various pathogenic groups depending on their reactions towards lettuce leaves. Genetic variability was identified in all isolates using transposable elements (TEs) analysis which revealed either the presence or absence of boty and flipper transposons. Furthermore, TEs typing of B. cinerea isolates demonstrated four TE types, on the basis of TE distribution in B. cinerea populations, namely, transposa (having both boty and flipper), flipper (possessing only flipper), boty (having only boty), and vacuma (lacking both boty and flipper elements). Transposa type was predominant (43.1%) and both transposa and vacuma isolate types showed no specialization with respect to host plant or plant location, while flipper type revealed a geographical preference in (BCG) isolates. Pathogenicity was also correlated to TE type as isolates containing transposa type revealed some degree of correlation with virulence behaviour, suggesting that transposa populations have higher pathogenic potential as compared to vacuma ones. The sensitivity of sampled isolates was tested against fenhexamid as one of the most important botryticides. Sensitivity to fenhexamid was shown in all isolates from strawberry and grape, grown in different locations, with low EC50 values between 0.012-0.084 μg/ml. This finding provided a cue for effective usage of fenhexamid for grey mold management. The present work demonstrated a correlation between the distribution of TEs and some fungal features such as isolate source and virulence, but no correlation was found between morphological characteristics, TE type, and sensitivity to fenhexamid. Cluster analysis based on phylogenetic tree showed that the Egyptian isolates branched as a separate divergent group from the others retrieved from GenBank, reflecting the presence of sequence polymorphism between the current isolates of B. cinerea and those previously identified.


2006 ◽  
Vol 61 (5-6) ◽  
pp. 405-412 ◽  
Author(s):  
Demet Cansaran ◽  
Sümer Aras ◽  
İrfan Kandemir ◽  
Gökhan Halıcı

Like many lichen-forming fungi, species of the genus Rhizoplaca have wide geographical distributions, but studies of their genetic variability are limited. The information about the ITS rDNA sequences of three species of Rhizoplaca from Anatolia was generated and aligned with other species from other countries and also with the data belonging to Lecanora species. The examined species were collected from the volcanic rocks of Mount Erciyes which is located in the middle of Anatolia (Turkey). The sequence data aligned with eight other samples of Rhizoplaca and six different species of Lecanora were obtained from GenBank. The results support the concept maintained by Arup and Grube (2000) that Rhizoplaca may not be a genus separate from Lecanora. According to the phylogenetic tree, Rhizoplaca melanopthalma from Turkey with two different samples of R. melanopthalma from Arizona (AF159929, AF159934) and a sample from Austria formed a group under the same branch. R. peltata and R. chrysoleuca samples from Anatolia located in two other branches of the tree formed sister groups with the samples of the same species from different countries. Although R. peltata remained on the same branch with other samples of the same species from other countries it was placed in a different branch within the group. When the three species from Anatolia were considered alone, it was noticed that Rhizoplaca melanopthalma and Rhizoplaca peltata are phylogenetically closer to each other than Rhizoplaca chrysoleuca; the morphological characteristics also support this result.


Plant Disease ◽  
2021 ◽  
Author(s):  
Jun Guo ◽  
Jin Chen ◽  
Zhao Hu ◽  
Jie Zhong ◽  
Jun Zi Zhu

Cardamine hupingshanensis is a selenium (Se) and cadmium (Cd) hyperaccumulator plant distributed in wetlands along the Wuling Mountains of China (Zhou et al. 2018). In March of 2020, a disease with symptoms similar to gray mold was observed on leaves of C. hupingshanensis in a nursery located in Changsha, Hunan Province, China. Almost 40% of the C. hupingshanensis (200 plants) were infected. Initially, small spots were scattered across the leaf surface or margin. As disease progressed, small spots enlarged to dark brown lesions, with green-gray, conidia containing mold layer under humid conditions. Small leaf pieces were cut from the lesion margins and were sterilized with 70% ethanol for 10 s, 2% NaOCl for 2 min, rinsed with sterilized distilled water for three times, and then placed on potato dextrose agar (PDA) medium at 22°C in the dark. Seven similar colonies were consistently isolated from seven samples and further purified by single-spore isolation. Strains cultured on PDA were initially white, forming gray-white aerial mycelia, then turned gray and produced sclerotia after incubation for 2 weeks, which were brown to blackish, irregular, 0.8 to 3.0 × 1.2 to 3.5 mm (n=50). Conidia were unicellular, globose or oval, colourless, 7.5 to 12.0 × 5.5 to 8.3 μm (n=50). Conidiophores arose singly or in group, straight or flexuous, septate, brownish to light brown, with enlarged basal cells, 12.5 to 22.1 × 120.7 to 310.3 μm. Based on their morphological characteristics in culture, the isolates were putatively identified as Botrytis cinerea (Ellis 1971). Genomic DNA of four representative isolates, HNSMJ-1 to HNSMJ-4, were extracted by CTAB method. The internal transcribed spacer region (ITS), glyceraldehyde-3-phosphate dehydrogenase gene (G3PDH), heat-shock protein 60 gene (HSP60), ATP-dependent RNA helicaseDBP7 gene (MS547) and DNA-dependent RNA polymerase subunit II gene (RPB2) were amplified and sequenced using the primers described previously (Aktaruzzaman et al. 2018) (MW820311, MW831620, MW831628, MW831623 and MW831629 for HNSMJ-1; MW314722, MW316616, MW316617, MW316618 and MW316619 for HNSMJ-2; MW820519, MW831621, MW831627, MW831624 and MW831631 for HNSMJ-3; MW820601, MW831622, MW831626, MW831625 and MW831630 for HNSMJ-4). BLAST searches showed 99.43 to 99.90% identity to the corresponding sequences of B. cinerea strains, such as HJ-5 (MF426032.1, MN448500.1, MK791187.1, MH727700.1 and KX867998.1). A combined phylogenetic tree using the ITS, G3PDH, HSP60 and RPB2 sequences was constructed by neighbor-joining method in MEGA 6. It revealed that HNSMJ-1 to HNSMJ-4 clustered in the B. cinerea clade. Pathogenicity tests were performed on healthy pot-grown C. hupingshanensis plants. Leaves were surface-sterilized and sprayed with conidial suspension (106 conidia/ mL), with sterile water served as controls. All plants were kept in growth chamber with 85% humidity at 25℃ following a 16 h day-8 h night cycle. The experiment was repeated twice, with each three replications. After 4 to 7 days, symptoms similar to those observed in the field developed on the inoculated leaves, whereas controls remained healthy. The pathogen was reisolated from symptomatic tissues and identified using molecular methods, confirming Koch’s postulates. B. cinerea has already been reported from China on C. lyrate (Zhang 2006), a different species of C. hupingshanensis. To the best of our knowledge, this is the first report of B. cinerea causing gray mold on C. hupingshanensis in China and worldwide. Based on the widespread damage in the nursery, appropriate control strategies should be adopted. This study provides a basis for studying the epidemic and management of the disease.


2002 ◽  
Vol 29 (3) ◽  
pp. 145-152 ◽  
Author(s):  
B. Latorre ◽  
◽  
M. Rioja ◽  
C. Lillo

2020 ◽  
Vol 21 (9) ◽  
Author(s):  
MUHAMMAD FAUZAN FARID ALHAMDI ◽  
Asep Setiawan ◽  
Satriyas Ilyas ◽  
Wai Kuan Ho

Abstract. Alhamdi MFF, Setiawan A, Ilyas S, Ho WK. 2020. Genetic variability of Indonesian landraces of Vigna subterranea: The morphological characteristics and molecular analysis using SSR markers. Biodiversitas 21: 3929-3937. Bambara groundnut (Vigna subterranea (L.) Verdc.) is a potential grain, which can be considered as an alternative source of protein and carbohydrate. Due to unavailability of commercial bambara groundut cultivar in Indonesia, the characterization of bambara groundnut landraces is an important step before developing cultivar with traits of interest. The objective of the research was to access genetic variability of Indonesian landraces of bambara groundnut with different seed coat colors based on morphological and molecular markers. The experiment was arranged as split-plot in a complete randomized block design with the main plot was cultivation methods and the sub plot was landraces. There were differences in leaf shape and pod shape among the landraces. There were two main clusters of Indonesian landraces of bambara groundnut with 88.28% similarity. The first cluster was Cream, Brown Sumedang, Black Sumedang and Black Tasikmalaya, and the second cluster was Black Sukabumi, Brown Gresik, Black Madura, and Black Gresik. The result based on SSR marker with capillary electrophoresis indicated Black Gresik and Black Madura landraces were different from other Indonesian landraces.  Cream Sumedang or Brown Sumedang from the first cluster and Black Gresik or Brown Gresik from the second cluster have the farthest distances for developing improved variety of bambara groundnut.


Genetika ◽  
2017 ◽  
Vol 49 (3) ◽  
pp. 831-842
Author(s):  
Ivana Rukavina ◽  
Sonja Petrovic ◽  
Tihomir Cupic ◽  
Sonja Vila ◽  
Suncica Guberac ◽  
...  

In this study, genetic variability was investigated among 50 winter wheat varieties (Triticum aestivum L.) which are grown in parts of Croatia, Hungary, Serbia and Slovenia according to 22 morphological characteristics used for DUS (distinctness, uniformity and stability) testing. The average Dice similarity coefficient was 0.371. The determined similarity coefficient was in range 0.083 - 0.776. A significant variability of 6.21% in the breeding programs according to period was determined as well as significant variability of 3.10% between breeding programs. The UPGMA clustering divided investigated varieties into four main clusters. Based on data analysis, most distant varieties with best morphological characteristics were found which will provide valuable resource of new parent's combinations in future breeding programs. This paper also provided valuable assessment of morphological characteristics to define distinctness criteria in the DUS examination of wheat.


2021 ◽  
Vol 5 (1) ◽  
pp. 1-8
Author(s):  
Lucas Aparecido Manzani Lisboa ◽  
Matheus Luis Oliveira Cunha ◽  
Fernando Takayuki Nakayama ◽  
Ignácio José de Godoy ◽  
Rodrigo Aparecido Vitorino ◽  
...  

Studies of adaptability, agronomic characterization and productive potential of peanuts, including information on morphophysiological characteristics, make it a strategy for choosing the best cultivar. In view of the above, the objective of this work was to verify the physiological characteristics and productivity of different peanut cultivars. In January of 2019 an experiment was installed in the Paulista Agribusiness Technology Agency, Regional Paulista Regional Camp, located in the municipality of Adamantina, state of São Paulo. The experimental design was in randomized blocks with six treatments, that is, peanut cultivars: Tatu, Semper Verde, OL3, OL5, 503 and 505 and with six replications totaling 36 plots, where each plot was composed of three plants. The Tatu cultivar showed low values ​​of morphological characteristics and productivity compared to other cultivars. The cultivars OL3, OL5, 503 and 505 showed higher averages of productivity. Great genetic variability was observed among the cultivars evaluated in this research due to the results obtained in the physiological and productivity variables.


2019 ◽  
pp. 145-174
Author(s):  
Marina Nonic ◽  
Dijana Cortan ◽  
Tatjana Batalo ◽  
Mirjana Sijacic-Nikolic

The paper presents the results of the research conducted within the European provenance beech trial, in the Teaching Base of the Faculty of Forestry - Debeli Lug. To assess the inter- -provenance genetic variability of beech, using morphological markers, and comparative analysis of the results obtained in two successive years, 10 trees per each selected provenance were sampled. Thirty leaves were collected from each tree (total of 300 leaves per provenance per year). The inter-provenance differences of all morphological leaf characteristics were statistically significant and can be assumed to be the result of the genetic constitution of the provenances themselves. Based on the comparative analysis of the morphological characteristics of beech leaves from 13 different provenances in two research years, it was found that the mean values of most analyzed morphological characteristics were higher in 2017, compared to the results from 2016. Such results could be explained by the different climatic conditions that prevailed in the provenance trial in research years.


2019 ◽  
Vol 31 (1) ◽  
pp. 101-116
Author(s):  
Fatih Hanci

AbstractThe aim of this study was to identify the molecular and morphological characteristics of Turkish pea accessions (Pisum sativum L.). The genetic diversity among 130 Turkish landraces and 2 commercial varieties in a total of 132 pea accessions was assessed with 14 simple sequence repeat (SSR) markers. Forty-eight (48) polymorphic alleles were identified using 14 SSR markers. The pairwise Dice coefficients of similarity between accessions ranged from 0.091 to 0.960. The polymorphism information content (PIC) value ranged from 0.585 to 0.861. Overall, 50 morphological traits were evaluated. Cluster analysis was carried out on a matrix of Euclidean distances. The accessions were divided into three main groups. Principal component analysis (PCA) was used to identify the weight of each morphological characteristic. According to the results, the highest eigenvalue was observed in PC-I (13.88) followed by PC-II (11.42), and PC-III (7.32). The first fifteen PCs with eigenvalues > 1 explained 74.08% of the variability. The results showed that the molecular markers were useful and polymorphic, sufficient to allocate all the evaluated accessions. This research has provided significant insights into the genetic variability of Turkish pea accessions.


Plant Disease ◽  
2013 ◽  
Vol 97 (8) ◽  
pp. 1116-1116 ◽  
Author(s):  
W. Cheon ◽  
Y. H. Jeon

In the winter of 2011, greenhouse-grown zucchini (Cucurbita pepo) in Andong City, Korea, showed severe disease symptoms on fruits and dying leaves of zucchini plants that resembled gray mold disease with about 20% yield loss. Symptoms included extensive growth of mycelia and gray conidia on stem and fruit lesions. Lesions expanded rapidly under cool, humid conditions. As the disease progressed, leaves, stems, and fruits became necrotic and were covered by an abundant, soft, gray, sporulating mycelium. Diseased fruit tissue was excised and surface sterilized by immersion in 2% NaOCl for 1 min, placed on PDA (potato dextrose agar), and incubated at 22°C. Fungal colonies were initially white and became gray to brown after 72 h. Analysis of light micrographs showed the presence of elliptical conidia on PDA that was 7.5 to 16.0 μm long and 5 to 10.5 μm wide. In culture, a few, black, small and large irregular sclerotia were produced. Microsclerotia were round, spherical or irregular in shape, and ranged from 1.0 to 3.3 and 1.2 to 3.4 mm (width and length). Conidiophores were slender and branched with enlarged apical cells bearing smooth, ash-colored conidia. These morphological characteristics identified the fungus as Botrytis cinerea (1). The internal transcribed spacer (ITS) region of rDNA was amplified using the ITS1 (forward) and ITS4 (reverse) primer set (ITS1: 5′-TCCGTAGGTGAACCTGCGG-3′, ITS4: 5′-TCCTCCGCTTATTGATATGC-3′) and sequenced (2). BLAST analysis of the PCR product showed that the sequence had 100% identity with the nucleotide sequences for B. cinerea. Pathogenicity tests were performed by placing mycelium fragments (1 cm2) of PDA cultures on zucchini fruits. Controls were treated with PDA alone. Five replicates for the inoculated and control plants were used. All fruits were covered with plastic bags and incubated in a growth chamber to maintain 90 to 100% relative humidity at 22°C. Typical symptoms appeared 2 to 6 days after inoculation. The inoculated plants developed typical gray mold symptoms with gray sporulating lesions, while controls remained healthy with no lesions. B. cinerea reisolated from the inoculated tissues was morphologically identical to the original isolates. In a cold outside (below 0°C), wet greenhouse, plants are likely to be exposed to resident Botrytis populations and if the gray mold disease occurs, it can spread on zucchini plants very fast, in 2 days to a week inside a 100 m2 greenhouse. Therefore, gray mold disease could have a significant impact on greenhouse production of zucchini. To our knowledge, this is the first report of B. cinerea causing gray mold of greenhouse-grown zucchini in Korea. References: (1) H. L. Barnett and B. B. Hunter. Illustrated Genera of Imperfect Fungi. Burgess Publishing Company, Minneapolis, MN, 1972. (2) T. J. White et al. PCR Protocols. Academic Press, Inc., New York, 1990.


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