scholarly journals Origin and Genetic Diversity of Nepalese Indigenous Goats (Capra hircus)

2021 ◽  
Author(s):  
Neena Amatya Gorkhali ◽  
Jiang Lin ◽  
Saroj Sapkota ◽  
Bhoj Raj Pokhrel ◽  
Yue-Hui Ma ◽  
...  
Keyword(s):  
Gene Flow ◽  
Phylogenetic Diversity ◽  
Haplotype Diversity ◽  
Variable Region ◽  
Capra Hircus ◽  
High Haplotype Diversity ◽  
Flow Through ◽  
Indigenous Goats ◽  
Mtdna Diversity ◽  
India And China

Background: A very little study has been conducted on the phylogenetic diversity of Nepalese indigenous goats where four breeds, Khari, Chyangra, Terai and Sinhal, have been identified. Methods: The 625-bp long sequences of the mitochondrial DNA hyper-variable region obtained from 93 goats in this study revealed high haplotype diversity among breeds, which come under four haplogroups (A-D).Result: The study demonstrated a certain level of gene flow among the neighboring goat populations exhibiting no correspondence between the geographic regions of origin and relationships among breeds. The complex mtDNA diversity and structure identified among indigenous Nepalese goats can be explained by gene flow through ancient trading and the current ‘free’ movement of goats across the geographic vicinities in India and China. Furthermore, HapG B showed the southward direction of gene flow which does not cross the Himalayas, whereas HapG B1 revealed the South-West gene flow from the claimed domestication center for HapG B, China, to Nepal.

scholarly journals Inter-island dispersal of flightless Bothrometopus huntleyi (Coleoptera: Curculionidae) from the sub-Antarctic Prince Edward Island archipelago

2011 ◽  
Vol 23 (3) ◽  
pp. 225-234 ◽  
Author(s):  
G.C. Grobler ◽  
A.D.S. Bastos ◽  
C.T. Chimimba ◽  
S.L. Chown
Keyword(s):  
Gene Flow ◽  
Prince Edward Island ◽  
Haplotype Diversity ◽  
Marion Island ◽  
High Haplotype Diversity ◽  
Prince Edward Islands ◽  
Cytochrome Oxidase I Gene ◽  
Low Levels ◽  
Dispersal Events ◽  
I Gene

AbstractBothrometopus huntleyi is a flightless weevil endemic to the volcanically-formed sub-Antarctic Prince Edward Islands archipelago that arose approximately 0.5 million years ago (m.y.a.). Since emergence, a series of volcanic and glaciation events have occurred on Marion Island, whilst Prince Edward Island, the second island constituting the archipelago, has remained largely unaffected by glaciation. Cytochrome oxidase I gene analyses indicate that major historical dispersal events in this species are linked to the geologically discrete histories of these islands and underlie the high haplotype diversity (0.995) recovered for the Prince Edward Islands archipelago. The estimated time to haplotype coalescence of ∼ 0.723 m.y.a. is in keeping with estimated dates of island emergence, and the majority of individuals appear to have descended from a relict, high-altitude population that is still present on Marion Island. The first major inter-island dispersal event occurred ∼ 0.507 m.y.a., coinciding with the oldest dated rocks on Marion Island. Apart from this early inter-island colonization, only one other between-island dispersal event was detected. The genetically discrete B. huntleyi complexes on each of the islands of the Prince Edward Islands archipelago together with the low levels of inter-island gene flow reaffirm the need to control alien invasive mice, which are restricted to Marion Island, and which prey on this weevil species.

scholarly journals Mitochondrial DNA D-loop sequence variability reveals high haplotype diversity and multiple maternal origins in twelve indigenous goat populations from Tanzania.

2021 ◽  
Author(s):  
Athumani Nguluma
Keyword(s):  
Genetic Diversity ◽  
Mitochondrial Dna ◽  
Haplotype Diversity ◽  
Capra Hircus ◽  
Maternal Origin ◽  
High Genetic Diversity ◽  
Ecological Zones ◽  
Goat Population ◽  
D Loop ◽  
Indigenous Goats

The Small East African (SEA) goat (Capra hircus) breeds are widely distributed in different agro-ecological zones of Tanzania. We report the genetic diversity, maternal origin, and phylogenetic relationship among the 12 Tanzanian indigenous goats populations, namely Fipa (n = 44), Songwe (n = 34), Tanga (n = 33), Pwani (n = 40), Newala (n = 49), Lindi (n = 46), Gogo (n = 73), Pare (n = 67), Maasai (n = 72), Sukuma (n = 67), and Ujiji (n = 67), based on the mitochondrial DNA (mtDNA) D-loop. High haplotype (Hd = 0.9619-0.9945) and nucleotide (π = 0.0120-0.0162) diversities were revealed from a total of 389 haplotypes. The majority of the haplotypes (h = 334) drawn from all the goat populations belonged to Haplogroup A which was consistent with the global scenario on the genetic pattern of maternal origin of all goat breeds in the world. Haplogroup G comprised of 45 haplotypes drawn from all populations except the Ujiji goat population while Haplogroup B with 10 haplotypes was dominated by Ujiji goats (41%). Tanzanian goats shared four haplotypes with the Kenyan goats and two with goats from South Africa, Namibia, and Mozambique. There was no sharing of haplotypes observed between individuals from Tanzanian goat populations with individuals from North or West Africa. The indigenous goats in Tanzania have high genetic diversity defined by 389 haplotypes and multiple maternal origins of haplogroup A, B and G. There is a lot of intermixing and high genetic variation within populations which represent an abundant resource for selective breeding in the different agro-ecological regions of the country.

High gene flow through pollen partially compensates spatial limited gene flow by seeds for a Neotropical tree in forest conservation and restoration areas

2021 ◽  
Author(s):  
Patricia Sanae Sujii ◽  
Evandro Vagner Tambarussi ◽  
Carolina Grando ◽  
Ellida de Aguiar Silvestre ◽  
João Paulo Gomes Viana ◽  
...  
Keyword(s):  
Gene Flow ◽  
Forest Conservation ◽  
Neotropical Tree ◽  
High Gene Flow ◽  
High Gene ◽  
Limited Gene Flow ◽  
Flow Through

scholarly journals Phylogeography of Bulinus truncatus (Audouin, 1827) (Gastropoda: Planorbidae) in Selected African Countries

2018 ◽  
Vol 3 (4) ◽  
pp. 127 ◽  
Author(s):  
Eniola Abe ◽  
Yun-Hai Guo ◽  
Haimo Shen ◽  
Masceline Mutsaka-Makuvaza ◽  
Mohamed Habib ◽  
...  
Keyword(s):  
Dna Sequences ◽  
Haplotype Diversity ◽  
Snail Host ◽  
Snail Species ◽  
African Countries ◽  
Urinary Schistosomiasis ◽  
Bulinus Truncatus ◽  
High Haplotype Diversity ◽  
Gene Coi ◽  
Mitochondrial Cytochrome Oxidase

The transmission of some schistosome parasites is dependent on the planorbid snail hosts. Bulinus truncatus is important in urinary schistosomiasis epidemiology in Africa. Hence, there is a need to define the snails’ phylogeography. This study assessed the population genetic structure of B. truncatus from Giza and Sharkia (Egypt), Barakat (Sudan) and Madziwa, Shamva District (Zimbabwe) using mitochondrial cytochrome oxidase subunit 1 gene (COI) and internal transcribed spacer 1 (ITS 1) markers. COI was sequenced from 94 B. truncatus samples including 38 (Egypt), 36 (Sudan) and 20 (Zimbabwe). However, only 51 ITS 1 sequences were identified from Egypt (28) and Sudan (23) (because of failure in either amplification or sequencing). The unique COI haplotypes of B. truncatus sequences observed were 6, 11, and 6 for Egypt, Sudan, and Zimbabwe, respectively. Also, 3 and 2 unique ITS 1 haplotypes were observed in sequences from Egypt and Sudan respectively. Mitochondrial DNA sequences from Sudan and Zimbabwe indicated high haplotype diversity with 0.768 and 0.784, respectively, while relatively low haplotype diversity was also observed for sequences from Egypt (0.334). The location of populations from Egypt and Sudan on the B. truncatus clade agrees with the location of both countries geographically. The clustering of the Zimbabwe sequences on different locations on the clade can be attributed to individuals with different genotypes within the population. No significant variation was observed within B. truncatus populations from Egypt and Sudan as indicated by the ITS 1 tree. This study investigated the genetic diversity of B. truncatus from Giza and Sharkia (Egypt), Barakat area (Sudan), and Madziwa (Zimbabwe), which is necessary for snail host surveillance in the study areas and also provided genomic data of this important snail species from the sampled countries.

scholarly journals Impacts of habitat fragmentation on genetic diversity in a tropical forest butterfly on Borneo

2007 ◽  
Vol 23 (6) ◽  
pp. 623-634 ◽  
Author(s):  
Suzan Benedick ◽  
Thomas A. White ◽  
Jeremy B. Searle ◽  
Keith C. Hamer ◽  
Nazirah Mustaffa ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Time Delay ◽  
Habitat Fragmentation ◽  
Forest Fragmentation ◽  
Haplotype Diversity ◽  
Genetic Erosion ◽  
Forest Sites ◽  
Increased Risk ◽  
Forest Remnants ◽  
Mtdna Diversity

Many areas of rain forest now exist as habitat fragments, and understanding the impacts of fragmentation is important for determining the viability of populations within forest remnants. We investigated impacts of forest fragmentation on genetic diversity in the butterfly Mycalesis orseis (Satyrinae) in Sabah (Malaysian Borneo). We investigated mtDNA diversity in 90 individuals from ten forest sites typical of the sizes of forest remnants that currently exist in the region. Nucleotide diversity declined with increasing isolation of remnants, but there was no effect of remnant size or population size, and haplotype diversity was similar among sites. Thus, approximately 50 y after forest fragmentation, few changes in genetic diversity were apparent and remnants apparently supported genetically viable populations of this butterfly. Many studies have shown that responses of species to habitat fragmentation usually follow a time delay, and so we developed a Monte Carlo simulation model to investigate changes in genetic diversity over time in small remnants. Model output indicated a substantial time delay (> 100 y) between fragmentation and genetic erosion, suggesting that, in the smallest study remnants, an increased risk of extinction from reduced genetic diversity is likely in the longer term.

Mitochondrial phylogeography of European pond turtles (Emys orbicularis, Emys trinacris) – an update

2007 ◽  
Vol 28 (3) ◽  
pp. 418-426 ◽  
Author(s):  
Antonia Celani ◽  
Peter Havaš ◽  
Sandro Tripepi ◽  
Viner Khabibullin ◽  
Andrey Bakiev ◽  
...  
Keyword(s):  
Haplotype Diversity ◽  
River Basins ◽  
Time Data ◽  
Emys Orbicularis ◽  
Glacial Refuges ◽  
Emys Trinacris ◽  
Mtdna Lineages ◽  
Mtdna Diversity ◽  
First Time ◽  
High Diversity

AbstractBased on more than 1100 samples of Emys orbicularis and E. trinacris, data on mtDNA diversity and distribution of haplotypes are provided, including for the first time data for Armenia, Georgia, Iran, and the Volga, Ural and Turgay River Basins of Russia and Kazakhstan. Eight mitochondrial lineages comprising 51 individual haplotypes occur in E. orbicularis, a ninth lineage with five haplotypes corresponds to E. trinacris. A high diversity of distinct mtDNA lineages and haplotypes occurs in the south, in the regions where putative glacial refuges were located. More northerly parts of Europe and adjacent Asia, which were recolonized by E. orbicularis in the Holocene, display distinctly less variation; most refuges did not contribute to northern recolonizations. Also in certain southern European lineages a decrease of haplotype diversity is observed with increasing latitude, suggestive of Holocene range expansions on a smaller scale.

scholarly journals Maternal variability of Croatian Spotted goat (Capra hircus)

2019 ◽  
Vol 64 (No. 6) ◽  
pp. 248-254
Author(s):  
Ivana Drzaic ◽  
Ino Curik ◽  
Dinko Novosel ◽  
Vlatka Cubric-Curik
Keyword(s):  
Mitochondrial Dna ◽  
Nucleotide Diversity ◽  
Population Expansion ◽  
Capra Hircus ◽  
Phylogeographic Structure ◽  
Goat Breed ◽  
Loop Region ◽  
D Loop ◽  
Mtdna Diversity

Abstract: This study provides the first characterization of maternal ancestry and mitochondrial DNA (mtDNA) diversity in the Croatian Spotted goat (CSG), the most important autochthonous goat breed in Croatia. CSG (n = 25) were randomly sampled from seven herds and a 660-bp fragment from the mtDNA D-loop region was sequenced. Those sequences were compared with 122 corresponding GenBank sequences from goat populations in Albania, Austria, Egypt, Greece, Italy, Romania and Switzerland. CSG showed a great polymorphism (only three out of 17 haplotypes were shared) with high a haplotype (Hd = 0.967 ± 0.019) and nucleotide diversity (π = 0.01305 ± 0.00068). When compared with Mediterranean and ancient goats, all of the 25 CSG were randomly scattered inside haplogroup A showing the weak phylogeographic structure with within-breed variance accounting for 91.76% of the genetic variation. In addition, population expansion tests (mismatch distribution and Fu’s Fs statistic) supported these results suggesting at least one population expansion.

Cross-fertilization as a reproductive strategy in a tissue flukesDidymosulcus katsuwonicola(Platyhelmintes: Didymozoidae) inferred by genetic analysis

Parasitology ◽  
2015 ◽  
Vol 142 (11) ◽  
pp. 1422-1429
Author(s):  
IVONA MLADINEO ◽  
MARINA TOMAŠ ◽  
RINO STANIĆ
Keyword(s):  
Life Cycle ◽  
Haplotype Diversity ◽  
Common Mechanism ◽  
High Haplotype Diversity ◽  
Atlantic Bluefin Tuna ◽  
Food Borne ◽  
Self Fertilization ◽  
Successful Fulfillment ◽  
Cross Fertilization ◽  
Host Tissues

SUMMARYMitochondrial DNA locus cytochrome oxidase I was used to asses intraspecific genetic diversity of a didymozoid speciesDidymosulcus katsuwonicola.Adult forms of this species live encapsulated in pairs in the gills of the reared Atlantic bluefin tuna (Thunnus thynnus). The life cycle of this food-borne parasites and its migration in the host tissues after releasing from the digestive tract to the definitive site in the gills are unknown. Our goal was to assess whether two encysted didymozoids share the same haplotype, indicative of a common maternal origin, as well as the extent of cross- in respect to self-fertilization strategy. Intraspecific comparison showed high haplotype diversity, while the presence of two matching haplotypes within a single cyst encompassed only 17% of sampled individuals. This infers that cross-fertilization between paired individuals within the cyst is more common mechanism than self-fertilization. Such hermaphroditic parasite's trait suggests the existence of intricate infection and reproduction mechanisms, presumably as an adaptation for successful fulfillment of their indirect life cycle through dissemination of genetically more diverse and consequently more fit offspring.

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