Phenotypic Differentiation between Weedy Rice Populations Associated with their Local Adaptation in Early-and Late-Season Rice Fields

2021 ◽  
Author(s):  
Zhi Wang ◽  
Xiao-Qi Jiang ◽  
Xing-xing Cai ◽  
Qi-Yu Xia ◽  
Bao-Rong Lu
Keyword(s):  
Flowering Time ◽  
Local Adaptation ◽  
Reproductive Traits ◽  
Common Garden ◽  
Rice Fields ◽  
Day Length ◽  
Weedy Rice ◽  
Early Season ◽  
Late Season ◽  
Late Rice

Abstract Background: Temperatures and photoperiods can profoundly affect plant growth and development and play vital roles in the local adaptation of plant species. Weedy rice (Oryza sativa f. spontanea) is a conspecific weed of cultivated rice, and it was found in the same rice fields (sympatry) of early and late rice-cultivation seasons in Leizhou, Guangdong Province of China. Generally, the phenological conditions, such as temperature and photoperiod, are different in the two seasons. Therefore, the early- and late-season weedy rice populations in the same rice fields provide a perfect system for estimating sympatric divergence in plant species. The previous study had demonstrated considerable genetic divergence between the early- and late-season weedy rice populations. Here, we designed in situ common garden experiments to estimate the phenotypical differences between the two-season weedy rice populations and disclose the local adaptation in weedy rice populations associated with their ambient temperature and photoperiod.Results: Distinct air temperature and day length variation patterns were recognized between the early and late rice-cultivation seasons, based on the 10-year historical climate data. More stressful conditions, indicated by low air temperature and long day length, were found for weedy rice growth in the early seasons. Noticeably, significant differences in plant heights, the number of tillers, flowering time, and reproductive traits were detected between the two-season weedy rice populations according to the early-season common garden experiment. The early-season populations showed evident higher plant heights, more tillers, and earlier flowering time than the late-season populations. However, such differences were not detected in the late-season common garden experiment. In addition, evident local adaptation represented by the traits such as plant heights, flowering time, and reproductive traits was only detected in the early-season weedy rice populations. The principal component analysis also showed clear population clusters between the two-season populations using the phenotypical data.Conclusions: This study provided clear evidence of phenotypic differentiation between the sympatric early- and late-season weedy rice populations, probably associated with the local adaptation to their ambient temperature and photoperiod. Our findings also have potential roles in facilitating the design of strategies for effective weedy rice control practices.

Stakeholder and field surveys on weed issues and research needs in rice production in Texas

2020 ◽  
pp. 1-9
Author(s):  
Rui Liu ◽  
Vijay Singh ◽  
Xin-Gen Zhou ◽  
Muthukumar Bagavathiannan
Keyword(s):  
Weed Management ◽  
Management Practices ◽  
Rice Production ◽  
Rice Fields ◽  
Weedy Rice ◽  
Research Needs ◽  
Field Surveys ◽  
Herbicide Resistant ◽  
Late Season ◽  
Hemp Sesbania

Abstract A paper-based survey was conducted from 2015 to 2017 among stakeholders of the Texas rice industry on current weed management challenges and factors influencing management decisions. A total of 108 survey questionnaires were completed by stakeholders at the rice Cooperative Extension meetings conducted in the rice-growing counties of Texas. In addition, late-season field surveys were conducted prior to harvest in 2015 and 2016 across the rice-growing counties to understand dominant weed escapes occurring in rice fields. Results from the questionnaire survey revealed that rice–fallow–rice was the most common rotation practiced in Texas rice production. Echinochloa spp., Leptochloa spp., and Cyperus spp. were the top three problematic weed issues faced by the respondents. Among the Leptochloa species, Nealley’s sprangletop, a relatively new species in rice fields, was indicated as an emerging concern. Clomazone was the most frequently used PRE herbicide, whereas quinclorac, propanil, imazethapyr, and cyhalofop were the popular POST herbicides. Most respondents (72%) made weed-control decisions on the basis of economic thresholds, whereas 63% made decisions on the basis of weed problems from previous years. Most respondents (88%) expressed moderate to high concern for herbicide-resistant weeds in their operations. Strategies to manage herbicide-resistant weeds and economical weed management practices were among the top suggested research needs. The field survey revealed that jungle rice, Nealley’s sprangletop, and hemp sesbania were the top three late-season weed escapes in rice production in Texas, with frequencies of occurrence of 28%, 19%, and 13%, respectively. Furthermore, average field area infested by a species was the greatest for jungle rice (13%), followed by hemp sesbania (11%) and weedy rice (11%). Findings from the stakeholder and field surveys help direct future research and outreach efforts for sustainable weed management in Texas rice.

Impact of tillage on the spatial distribution of CH4 and N2O in the soil profile of late rice fields

2021 ◽  
Vol 211 ◽  
pp. 105029
Author(s):  
Jinfei Feng ◽  
Tong Yang ◽  
Fengbo Li ◽  
Xiyue Zhou ◽  
Chunchun Xu ◽  
...  
Keyword(s):  
Spatial Distribution ◽  
Soil Profile ◽  
Rice Fields ◽  
Ch4 And N2o ◽  
Late Rice

Weedy Rice Diversity in Southern Brazil

Weed Science ◽  
2021 ◽  
pp. 1-37
Author(s):  
Leonard Bonilla Piveta ◽  
José Alberto Noldin ◽  
Nilda Roma-Burgos ◽  
Vívian Ebeling Viana ◽  
Lariza Benedetti ◽  
...  
Keyword(s):  
Oryza Sativa ◽  
Flowering Time ◽  
Weed Management ◽  
Phenotypic Diversity ◽  
Weedy Rice ◽  
Phenotypic Traits ◽  
Southern Brazil ◽  
Variable Response ◽  
Cultivated Rice ◽  
Flowering Synchrony

Abstract Weedy rice (Oryza sativa L.) is one of the most troublesome weeds affecting rice (Oryza sativa L.) production in many countries. Weedy rice control is difficult in rice fields because the weed and crop are phenotypically and morphologically similar. Weedy rice can be a source of genetic diversity to cultivated rice. Thus, this study aimed to characterize the morphological diversity of weedy rice in Southern Brazil. Qualitative and quantitative traits of 249 accessions from eight rice growing mesoregions in Rio Grande do Sul (RS) and Santa Catarina (SC) states were analyzed. For each accession, 24 morphological descriptors (14 qualitative and 10 quantitative) were evaluated. All the 249 accessions from RS and SC are of indica lineage. Considering all the phenotypic traits evaluated, the accessions separated into 14 distinct groups. One of the largest groups consisted of plants that were predominantly tall and with green leaves, intermediate shattering, and variable in flowering time. Distinct subgroups exist within larger clusters, showing discernable phenotypic diversity within the main clusters. The variability in flowering time was high (77 to 110 d after emergence), indicating high potential for flowering synchrony with rice cultivars and, consequently, gene flow. This indicates the need to remove escapes when planting herbicide-resistant rice. Thus, weedy rice populations in Southern Brazil are highly diverse and this diversity could result in variable response to weed management.

scholarly journals Evolutionary inference from QST-FST comparisons: disentangling local adaptation from altitudinal gradient selection in snapdragon plants

2018 ◽  
Author(s):  
Sara Marin ◽  
Juliette Archambeau ◽  
Vincent Bonhomme ◽  
Mylène Lascoste ◽  
Benoit Pujol
Keyword(s):  
Local Adaptation ◽  
Natural Populations ◽  
Common Garden ◽  
Global Scale ◽  
Structured Populations ◽  
Adaptive Divergence ◽  
Adaptation To Climate Change ◽  
Phenotypic Differentiation ◽  
Multiple Populations ◽  
Environmental Demand

ABSTRACTPhenotypic differentiation among natural populations can be explained by natural selection or by neutral processes such as drift. There are many examples in the literature where comparing the effects of these processes on multiple populations has allowed the detection of local adaptation. However, these studies rarely identify the agents of selection. Whether population adaptive divergence is caused by local features of the environment, or by the environmental demand emerging at a more global scale, for example along altitudinal gradients, is a question that remains poorly investigated. Here, we measured neutral genetic (FST) and quantitative genetic (QST) differentiation among 13 populations of snapdragon plants (Antirrhinum majus) in a common garden experiment. We found low but significant genetic differentiation at putatively neutral markers, which supports the hypothesis of either ongoing pervasive homogenisation via gene flow between diverged populations or reproductive isolation between disconnected populations. Our results also support the hypothesis of local adaptation involving phenological, morphological, reproductive and functional traits. They also showed that phenotypic differentiation increased with altitude for traits reflecting the reproduction and the phenology of plants, thereby confirming the role of such traits in their adaptation to environmental differences associated with altitude. Our approach allowed us to identify candidate traits for the adaptation to climate change in snapdragon plants. Our findings imply that environmental conditions changing with altitude, such as the climatic envelope, influenced the adaptation of multiple populations of snapdragon plants on the top of their adaptation to local environmental features. They also have implications for the study of adaptive evolution in structured populations because they highlight the need to disentangle the adaptation of plant populations to climate envelopes and altitude from the confounding effects of selective pressures acting specifically at the local scale of a population.

scholarly journals Genomic Regions Associated with the Control of Flowering Time in Durum Wheat

2020 ◽  
Author(s):  
Priyanka Gupta ◽  
Hafssa Kabbaj ◽  
Khaoula El Hassouni ◽  
Marco Maccaferri ◽  
Miguel Sabchez-Garcia ◽  
...  
Keyword(s):  
Durum Wheat ◽  
Flowering Time ◽  
Genome Wide Association Study ◽  
Strong Association ◽  
Triticum Aestivum L ◽  
Day Length ◽  
Significant Qtls ◽  
A Genome ◽  
Days To Heading ◽  
Genomic Regions

Flowering time is a critical stage for crop development as it regulates the ability of plants to adapt to an environment. To understand the genetic control of flowering time, a genome wide association study (GWAS) was conducted to identify the genomic regions associated with the control of this trait in durum wheat (Triticum durum Desf.). A total of 96 landraces and 288 modern lines were evaluated for days to heading, growing degree days, and accumulated day length at flowering across 13 environments spread across Morocco, Lebanon, Mauritania, and Senegal. These environments were grouped into four pheno-environments based on temperatures, day length and other climatic variables. Genotyping with 35K Axiom array generated 7,652 polymorphic SNPs in addition to 3 KASP markers associated to known flowering genes. In total, 34 significant QTLs were identified in both landraces and modern lines. Some QTLs had strong association with already known regulatory photoperiod genes, Ppd-A and Ppd-B and vernalization genes Vrn-A1, and Vrn3. However, these loci explained only 5 to 20% of variance for days to heading. Seven QTLs overlapped between the two germplasm groups in which Q.ICD.Eps-03 and Q.ICD.Vrn-17 consistently affected flowering time in all the pheno-environments, while Q.ICD.Eps-11 and Q.ICD.Ppd-12 were significant only in two pheno-environments and the combined analysis across all environments. These results help clarify the genetic mechanism controlling flowering time in durum wheat and show some clear distinctions to what is known for common wheat (Triticum aestivum L.)

scholarly journals Gen dan QTL Pengendali Umur pada Kedelai

2016 ◽  
Vol 9 (2) ◽  
pp. 85
Author(s):  
I Made Tasma
Keyword(s):  
Flowering Time ◽  
Germplasm Collection ◽  
Reproductive Traits ◽  
Floral Organ ◽  
Growth Conditions ◽  
Gene Markers ◽  
Soybean Germplasm ◽  
Growing Seasons ◽  
Short Period ◽  
Model Plant Arabidopsis Thaliana

<p>Traits that control time of flowering and<br />maturity in soybean determine harvesting time of a soybean<br />cultivar. In Indonesia, early maturing soybean cultivars are<br />important at short period growing seasons due to the water<br />shortage in dry planting season. Shorter period of growing<br />season would increase the crop harvest index. Genetic<br />diversity of the present soybean germplasm collection is<br />low. Diversity improvement through introduction from<br />countries with four seasons faced difficulty due to<br />differences in growth adaptability. Technology for developing<br />germplasm with a broader adaptation will facilitate<br />germplasm movement from a more diverse environmental<br />growth. The objective of this review was to describe how<br />the time of flowering and maturity are controlled in soybean.<br />The review is supported by flowering time mechanism of<br />the model plant Arabidopsis thaliana as the genetics of<br />flowering time has been intensively studied in this model<br />plant. Transition from vegetative to reproductive development<br />is the outcome of the activation of genes responsible<br />for floral organ formation. Initial activation is generally the<br />result of environmental cues indicating the appropriate time<br />to flower. Studies from Arabidopsis showed that transition<br />from vegetative to reproductive stage is complex involving<br />many genes and several genetic pathways. In soybean, time<br />of flowering and maturity are controlled by at least nine<br />genes, E1 to E8 and Dt1. The genes interact with daylength<br />and temperature. Major and minor QTLs controlling the<br />traits were identified using various mapping populations.<br />The major QTLs were detected at various populations with<br />diverse genetic backgrounds tested at diverse environmenttal<br />conditions. Some of the QTLs were associated with the E<br />genes and some others were not. Several Arabidopsis<br />flowering gene homologous sequences were also mapped<br />on the soybean genome. The E gene markers and the QTLs<br />with large effect for reproductive traits are breeder targets<br />for breeding and development of soybean photoperiod<br />insensitive germplasm. Genes for flowering time isolated<br />from Arabidopsis can be used to develop transgenic<br />soybean with broader adaptation. Technology for development<br />of soybean germplasm with broader adaptation will<br />facilitate the soybean germplasm movement from diverse<br />environmental growth conditions to support systematic and<br />sustainable national soybean breeding programs.</p>

scholarly journals Managing flowering time in Miscanthus and sugarcane to facilitate intra- and intergeneric crosses

PLoS ONE ◽  
2021 ◽  
Vol 16 (1) ◽  
pp. e0240390
Author(s):  
Hongxu Dong ◽  
Lindsay V. Clark ◽  
Xiaoli Jin ◽  
Kossonou Anzoua ◽  
Larisa Bagmet ◽  
...  
Keyword(s):  
Flowering Time ◽  
High Latitude ◽  
Floral Induction ◽  
Day Treatment ◽  
Day Length ◽  
Close Relative ◽  
Short Day ◽  
Culm Length ◽  
Low Latitudes ◽  
Short Days

Miscanthus is a close relative of Saccharum and a potentially valuable genetic resource for improving sugarcane. Differences in flowering time within and between Miscanthus and Saccharum hinders intra- and interspecific hybridizations. A series of greenhouse experiments were conducted over three years to determine how to synchronize flowering time of Saccharum and Miscanthus genotypes. We found that day length was an important factor influencing when Miscanthus and Saccharum flowered. Sugarcane could be induced to flower in a central Illinois greenhouse using supplemental lighting to reduce the rate at which days shortened during the autumn and winter to 1 min d-1, which allowed us to synchronize the flowering of some sugarcane genotypes with Miscanthus genotypes primarily from low latitudes. In a complementary growth chamber experiment, we evaluated 33 Miscanthus genotypes, including 28 M. sinensis, 2 M. floridulus, and 3 M. ×giganteus collected from 20.9° S to 44.9° N for response to three day lengths (10 h, 12.5 h, and 15 h). High latitude-adapted M. sinensis flowered mainly under 15 h days, but unexpectedly, short days resulted in short, stocky plants that did not flower; in some cases, flag leaves developed under short days but heading did not occur. In contrast, for M. sinensis and M. floridulus from low latitudes, shorter day lengths typically resulted in earlier flowering, and for some low latitude genotypes, 15 h days resulted in no flowering. However, the highest ratio of reproductive shoots to total number of culms was typically observed for 12.5 h or 15 h days. Latitude of origin was significantly associated with culm length, and the shorter the days, the stronger the relationship. Nearly all entries achieved maximal culm length under the 15 h treatment, but the nearer to the equator an accession originated, the less of a difference in culm length between the short-day treatments and the 15 h day treatment. Under short days, short culms for high-latitude accessions was achieved by different physiological mechanisms for M. sinensis genetic groups from the mainland in comparison to those from Japan; for mainland accessions, the mechanism was reduced internode length, whereas for Japanese accessions the phyllochron under short days was greater than under long days. Thus, for M. sinensis, short days typically hastened floral induction, consistent with the expectations for a facultative short-day plant. However, for high latitude accessions of M. sinensis, days less than 12.5 h also signaled that plants should prepare for winter by producing many short culms with limited elongation and development; moreover, this response was also epistatic to flowering. Thus, to flower M. sinensis that originates from high latitudes synchronously with sugarcane, the former needs day lengths >12.5 h (perhaps as high as 15 h), whereas that the latter needs day lengths <12.5 h.

scholarly journals Impacts of compound hot–dry extremes on US soybean yields

2021 ◽  
Vol 12 (4) ◽  
pp. 1371-1391
Author(s):  
Raed Hamed ◽  
Anne F. Van Loon ◽  
Jeroen Aerts ◽  
Dim Coumou
Keyword(s):  
Soil Moisture ◽  
Synergistic Effects ◽  
Weather Data ◽  
Yield Variability ◽  
Critical Element ◽  
Early Season ◽  
Soybean Yield ◽  
Late Season ◽  
The Us ◽  
Dry Conditions

Abstract. The US agriculture system supplies more than one-third of globally traded soybean, and with 90 % of US soybean produced under rainfed agriculture, soybean trade is particularly sensitive to weather and climate variability. Average growing season climate conditions can explain about one-third of US soybean yield variability. Additionally, crops can be sensitive to specific short-term weather extremes, occurring in isolation or compounding at key moments throughout crop development. Here, we identify the dominant within-season climate drivers that can explain soybean yield variability in the US, and we explore the synergistic effects between drivers that can lead to severe impacts. The study combines weather data from reanalysis and satellite-informed root zone soil moisture fields with subnational crop yields using statistical methods that account for interaction effects. On average, our models can explain about two-thirds of the year-to-year yield variability (70 % for all years and 60 % for out-of-sample predictions). The largest negative influence on soybean yields is driven by high temperature and low soil moisture during the summer crop reproductive period. Moreover, due to synergistic effects, heat is considerably more damaging to soybean crops during dry conditions and is less problematic during wet conditions. Compounding and interacting hot and dry (hot–dry) summer conditions (defined by the 95th and 5th percentiles of temperature and soil moisture respectively) reduce yields by 2 standard deviations. This sensitivity is 4 and 3 times larger than the sensitivity to hot or dry conditions alone respectively. Other relevant drivers of negative yield responses are lower temperatures early and late in the season, excessive precipitation in the early season, and dry conditions in the late season. We note that the sensitivity to the identified drivers varies across the spatial domain. Higher latitudes, and thus colder regions, are positively affected by high temperatures during the summer period. On the other hand, warmer southeastern regions are positively affected by low temperatures during the late season. Historic trends in identified drivers indicate that US soybean production has generally benefited from recent shifts in weather except for increasing rainfall in the early season. Overall, warming conditions have reduced the risk of frost in the early and late seasons and have potentially allowed for earlier sowing dates. More importantly, summers have been getting cooler and wetter over the eastern US. Nevertheless, despite these positive changes, we show that the frequency of compound hot–dry summer events has remained unchanged over the 1946–2016 period. In the longer term, climate models project substantially warmer summers for the continental US, although uncertainty remains as to whether this will be accompanied by drier conditions. This highlights a critical element to explore in future studies focused on US agricultural production risk under climate change.

scholarly journals Barley yield formation under abiotic stress depends on the interplay between flowering time genes and environmental cues

2018 ◽  
Author(s):  
Mathias Wiegmann ◽  
Andreas Maurer ◽  
Anh Pham ◽  
Timothy J. March ◽  
Ayed Al-Abdallat ◽  
...  
Keyword(s):  
Grain Yield ◽  
Flowering Time ◽  
Plant Development ◽  
Abiotic Stresses ◽  
Wild Barley ◽  
Nitrogen Deficiency ◽  
Pleiotropic Effects ◽  
Day Length ◽  
Environmental Cues ◽  
Yield Formation

AbstractSince the dawn of agriculture, crop yield has always been impaired through abiotic stresses. In a field trial across five locations worldwide, we tested three abiotic stresses, nitrogen deficiency, drought and salinity, using HEB-YIELD, a selected subset of the wild barley nested association mapping population HEB-25. We show that barley flowering time genes Ppd-H1, Sdw1, Vrn-H1 and Vrn-H3 exert pleiotropic effects on plant development and grain yield. Under field conditions, these effects are strongly influenced by environmental cues like day length and temperature. For example, in Al-Karak, Jordan, the day length-sensitive wild barley allele of Ppd-H1 was associated with an increase of grain yield by up to 30% compared to the insensitive elite barley allele. The observed yield increase is accompanied by pleiotropic effects of Ppd-H1 resulting in shorter life cycle, extended grain filling period and increased grain size. Our study indicates that the adequate timing of plant development is crucial to maximize yield formation under harsh environmental conditions. We provide evidence that wild barley germplasm, introgressed into elite barley cultivars, can be utilized to improve grain yield. The presented knowledge may be transferred to related crop species like wheat and rice securing the rising global food demand for cereals.

Sign in / Sign up

Export Citation Format

Share Document