scholarly journals Development of Morphological Descriptors For Characterization of Teak (Tectona Grandis L. f.) Seed Sources In India

2021 ◽  
Author(s):  
Jawahar Vishnu M.V. ◽  
Parthiban K.T. ◽  
Umesh Kanna S ◽  
Radhakrishnan S
Keyword(s):  
Leaf Shape ◽  
Similarity Index ◽  
Tectona Grandis ◽  
Group Method ◽  
Leaf Margin ◽  
Morphological Descriptors ◽  
Internodal Length ◽  
Leaf Pubescence ◽  
Leaf Colour ◽  
Seed Sources

Abstract Teak (Tectona grandis L.f.) plantations in India has been intensified in the recent past yet, morphological descriptors for teak is still lacking. Hence, this study aimed to develop descriptors using morphological traits. Among 30 seed sources collected from different states of India, 24 morphological descriptors viz., leaf length, leaf width, presence of petiole, petiole length, leaf shape, shape of leaf apex, shape of leaf base, leaf texture, phyllotaxy, leaf attitude, leaf margin, leaf margin undulation, leaf brightness, leaf venation, leaf main vein, leaf veins, leaf vein colour, leaf colour, leaf pubescence, young leaf colour, number of internodes, internodal length, trunk spots and trunk colour were developed based on leaf and stem characteristics. Subsequently, genetic similarity among the sources were estimated by Jaccard similarity index and cluster analysis was performed by Unweighted Pair Group Method with Arithmetic mean (UPGMA) method.

scholarly journals Morphological descriptors for the characterization of teak clones (Tectona grandis L.f.) in plantations

2020 ◽  
Vol 29 (2) ◽  
pp. eRC02
Author(s):  
Jorge-L. Reategui-Betancourt ◽  
Daniele Aparecida-A. Arriel ◽  
Sidney-Fernando Caldeira ◽  
Antonio-Rioyei Higa ◽  
Paulo-C. Flôres-Junior ◽  
...  
Keyword(s):  
Block Design ◽  
Similarity Measures ◽  
Morphological Characteristics ◽  
Tectona Grandis ◽  
Group Method ◽  
Morphological Descriptors ◽  
Mato Grosso ◽  
Pair Group ◽  
Randomized Block Design ◽  
Clonal Test

Aim of study: The objective of this work was to identify possible morphological descriptors for teak clones, in order to support the cultivars protection process of this species.Area of study: This experiment was carried out in ‘São José dos Quatro Marcos’, Mato Grosso, midwest Brazil.Material and methods: A teak clonal test, assessing 18 clones, was evaluated at the ages of 29 and 41 months by means of 41 morphological characteristics, related mainly to the branches, leaves and trunk. The clonal test was established in a randomized block design composed by three blocks, each block containing 18 plots, one for each clone. Each plot had 36 plants, but only the innermost five individuals were selected and evaluated. The information was organized in a presence and absence matrix. Subsequently, genetic similarity measures were estimated, by means of the Jaccard index, and a clustering was performed by the Unweighted Pair Group Method using the Arithmetic averages (UPGMA) method.Main results: A total of 26 and 28 morphological characteristic that exhibited DHS (distinction, homogeneity and stability) were identified at the ages of 29 and 41 months, respectively. Of these, 17 characteristics showed the same behavior at 29 and 41 months of age. However, it is important to emphasize that the evaluation must be performed under the same planting conditions in which these descriptors were developed.Research highlights: These 17 morphological characteristics can compose the list of potential morphological descriptors to be used in the process of teak clones/cultivars protection.Keywords: cultivars protection; morphological characteristics; distinction, homogeneity; stability.

scholarly journals Genetic diversity in table grapes based on RAPD and microsatellite markers

2011 ◽  
Vol 46 (9) ◽  
pp. 1035-1044 ◽  
Author(s):  
Patrícia Coelho de Souza Leão ◽  
Sérgio Yoshimitsu Motoike
Keyword(s):  
Genetic Diversity ◽  
Microsatellite Markers ◽  
Genetic Relationships ◽  
Similarity Index ◽  
Genetic Distances ◽  
Table Grape ◽  
Group Method ◽  
Molecular Characteristics ◽  
Table Grapes ◽  
Pair Group

The objective of this work was to analyze the genetic diversity of 47 table grape accessions, from the grapevine germplasm bank of Embrapa Semiárido, using 20 RAPD and seven microsatellite markers. Genetic distances between pairs of accessions were obtained based on Jaccard's similarity index for RAPD data and on the arithmetic complement of the weighted index for microsatellite data. The groups were formed according to the Tocher's cluster analysis and to the unweighted pair‑group method with arithmetic mean (UPGMA). The microsatellite markers were more efficient than the RAPD ones in the identification of genetic relationships. Information on the genetic distance, based on molecular characteristics and coupled with the cultivar agronomic performance, allowed for the recommendation of parents for crossings, in order to obtain superior hybrids in segregating populations for the table grape breeding program of Embrapa Semiárido.

scholarly journals Combining Leaf Shape and Texture for Costa Rican Plant Species

2016 ◽  
Author(s):  
Jose Carranza-Rojas ◽  
Erick Mata-Montero
Keyword(s):  
Costa Rica ◽  
Tree Species ◽  
Leaf Shape ◽  
Costa Rican ◽  
Automatic Identification ◽  
Leaf Margin ◽  
Best Value ◽  
Candidate Species ◽  
Image Dataset ◽  
Northeast Us

In the last decade, research in Computer Vision has developed several algorithms to help botanists and non-experts to classify plants based on images of their leaves. LeafSnap is a mobile application that uses a multiscale curvature model of the leaf margin to classify leaf images into species. It has achieved high levels of accuracy on 184 tree species from Northeast US. We extend the research that led to the development of LeafSnap along two lines. First, LeafSnap’s underlying algorithms are applied to a set of 66 tree species from Costa Rica. Then, texture is used as an additional criterion to measure the level of improvement achieved in the automatic identification of Costa Rica tree species. A 25.6% improvement was achieved for a Costa Rican clean image dataset and 42.5% for a Costa Rican noisy image dataset. In both cases, our results show this increment as statistically significant. Further statistical analysis of visual noise impact, best algorithm combinations per species, and best value of k , the minimal cardinality of the set of candidate species that the tested algorithms render as best matches is also presented in this research.

Numerical taxonomy contributes to delimitation of Iranian and Turkish Hesperis L. (Brassicaceae) species

Phytotaxa ◽  
2018 ◽  
Vol 367 (2) ◽  
pp. 101 ◽  
Author(s):  
ATENA ESLAMI FAROUJI ◽  
HAMED KHODAYARI ◽  
MOSTAFA ASSADI ◽  
BARIŞ ÖZÜDOĞRU ◽  
ÖZLEM ÇETIN ◽  
...  
Keyword(s):  
Distance Matrix ◽  
Morphological Characters ◽  
Resolving Power ◽  
Group Method ◽  
Morphological Descriptors ◽  
Operational Taxonomic Units ◽  
Pair Group ◽  
Species Circumscription ◽  
Taxonomic Descriptions ◽  
Brassicaceae Species

Taxonomic descriptions of Iranian and Turkish Hesperis (Brassicaceae) species are generally insufficient and partly incomplete, which makes the species delimitation ambiguous. In order to clarify species circumscription, we scored 57 morphological descriptors (MDs) in 121 operational taxonomic units (OTUs) of Hesperis from Iran and Turkey and performed a multivariate analysis. The dendrogram was created from Gower’s distance matrix using Unweighted Pair Group Method with arithmetic mean (UPGMA) algorithm. The dendrogram clearly separates the 121 OTUs of Hesperis into five main phenons, which significantly deviate from the classical taxonomic treatment (sectional assignments) of the genus. Similar distinct delineation among the five phenons was revealed by a Principal Coordinate Analysis (PCoA), highlighting the resolving power of the multivariate analyses of quantitative and qualitative morphological characters. While there were significant variations among the OTUs for 57 MDs, the most distinctive morphological descriptors delimiting the phenons were estimated to be fruit, petal, stem, and leaf by a de-trended correspondence analysis (DCA). We also present a comparative discussion between the classical taxonomy and the delimitation of taxa revealed in our study.

scholarly journals The Diversity And Classification Of Intraspecies Of Gembolo (Dioscorea Bulbifera L.) Based On Morphological Character

2018 ◽  
Vol 73 ◽  
pp. 04022
Author(s):  
Andri Prasetia ◽  
Purnomo ◽  
Budi Setiadi
Keyword(s):  
Morphological Character ◽  
Leaf Shape ◽  
Similarity Index ◽  
Morphological Characters ◽  
Multivariate Statistical ◽  
Pair Group ◽  
Group I ◽  
Dioscorea Bulbifera ◽  
Phenetic Relationship ◽  
Special Region

Gembolo (Dioscorea bulbifera L.) is a dioecious, annual, herbaceous, climbing plants and has heart-shaped leaves. Gembolo has aerial tubers (bulbil) and main tuber that has irregular shapes, as well as many rough roots at the base of the stem. The purpose of this research is to know the phenetic relationship of the germplasm of Gembolo in Special Region of Yogyakarta based on morphological character. The results of this study are expected to provide information on intraspecies diversity, phenetic relationship and Gembolo distribution. Gembolo plant samples were taken from D.I Yogyakarta. The sample was observed based on the difference of morphological character, so the number of accessions obtained from D.I Yogyakarta could be determined. Morphological characters would be described and characterized to determine the Operational Taxonomic Units (OTU’s). Based on morphological character data, then the grouping analysis was done by grouping analysis method and the dendrogram was formed by the method of Unweighted Pair Group Methods using Arithmetic averages (UPGMA) using Multivariate Statistical Program (MVSP) software version 3.1pc. The results showed that gembolo had morphological variation in tuber shape, stem color, leaf shape, leaf base shape and leaf tip shape. Based on the morphological characters, 2 main groups with the value of similarity index of 62,8% was formed. Group I consisted of four accessions with a similarity value of 85%. Group II consisted of eight accessions with a similarity value of 75%. A high similarity based on the morphological character on gembolo accession caused the gembolo plants in Special Region of Yogyakarta did not vary.

Aubrieta alshehbazii (Brassicaceae), a new species from Central Turkey

Phytotaxa ◽  
2017 ◽  
Vol 299 (1) ◽  
pp. 103 ◽  
Author(s):  
ALİ A. DÖNMEZ ◽  
ZÜBEYDE UĞURLU AYDIN ◽  
MARCUS A. KOCH
Keyword(s):  
New Species ◽  
Leaf Shape ◽  
Type Material ◽  
Morphological Description ◽  
Leaf Margin ◽  
New Synonym ◽  
Central Turkey ◽  
A New Species

Aubrieta alshehbazii is described as a new species that was collected from rocky steppe of Central Turkey. The new species is sympatric and most similar to A. pinardii, but differs by leaf shape, leaf margin, petiole, indumentum and inflorescence. A detailed morphological description, figures and comparisons with potentially closely allied species are provided herein. The new species is assigned to CR threat category of the IUCN. Beside this, due to further studies on type material of various Aubrieta taxa, A. anamasica is proposed as a new synonym of A. pinardii

scholarly journals Variation and Phenetic Relationship of Tobacco (Nicotiana tabacum L.) In Central Java and Yogyakarta Based on Morphological Characters

2021 ◽  
Vol 3 (2) ◽  
pp. 73-79
Author(s):  
Agung Dwi Santoso ◽  
Purnomo Purnomo
Keyword(s):  
Nicotiana Tabacum ◽  
Similarity Index ◽  
Morphological Characters ◽  
Group Method ◽  
Similarity Coefficients ◽  
Leaf Venation ◽  
Central Java ◽  
Pair Group ◽  
Nicotiana Tabacum L ◽  
Micromorphological Characters

Tobacco (Nicotiana tabacum L.) is a plant used as a mixture of cigarettes, and recreational media especially for men. This study aimed to identify variations, and determine the relationship between tobacco cultivars in Central Java and Yogyakarta based on macromorphological and micromorphological characters. Sampling locations are determined by surveying locations in both regions. Tobacco samples found include 5 cultivars in Central Java namely 'Mantili', 'Uler Magetan', 'Garut', ‘Gober Boyolali’, 'Manila', and 3 cultivars in Yogyakarta namely 'Siluk', 'Java', and 'Virginia'. Characterization with 23 qualitative macromorphological characters including leaves, and stems, with 9 qualitative and quantitative micromorphological characters including trichome and stomata. Descriptive data analysis is done to obtain the typical character of each cultivar, followed by numerical analysis including scoring characters processed with MVSP (Multi Variate Statistical Package), clustering with UPGMA (Unweighted Pair Group Method with Averages), and calculation of similarity coefficients with Simple matching formula. The results showed variations in the macromorphological characters including the shape of the leaf lamina, the base of the leaf, the absence of leaf stalks, and type of leaf venation. Tobacco has anisositic stomata, and varies in terms of length, width, and density of stomata. Tobacco trichomes are glandular. The result dendrograms form two clusters (A and B) with the similarity index of each cluster above 0.80. Cultivars with close relationships such as 'Siluk'-'Java', and far relationship like 'Java'-'Manila'.

scholarly journals Distinctness, Uniformity and Stability (DUS) Characterization of Neolamarckia Cadamba Genetic Resources

2019 ◽  
Vol 7 (2) ◽  
pp. 268-275
Author(s):  
R. Thirunirai Selvan ◽  
K. T. Parthiban ◽  
B. Palanikumaran
Keyword(s):  
Genetic Resources ◽  
Leaf Shape ◽  
Morphological Characters ◽  
Leaf Length ◽  
Leaf Margin ◽  
Leaf Venation ◽  
Leaf Petiole ◽  
New Varieties ◽  
Bark Texture

Neolamarckia cadamba (Kadam) genetic resources were characterised Distinctness, Uniformity and Stability (DUS) traits based on International Union for the Protection of New Varieties of Plants12 guidelines. Twenty-five clones of kadam were characterised based on the morphological characters of leaf and bark with 12 descriptors. Among these 12 descriptors, 9 were qualitative traits viz., leaf shape, Leaf base shape, apex shape, leaf margin, leaf venation, base symmetry, Waxiness in upper side of leaf, bark colour and bark texture and 3 were quantitative characters viz., leaf length, leaf breath, leaf petiole length. The study exhibited significant variations among the genetic resources investigated for various DUS traits, which could act as reference traits for developing variety to protect the genetic resources through Intellectual Property Rights.

scholarly journals Overexpression of BpCUC2 Influences Leaf Shape and Internode Development in Betula pendula

2019 ◽  
Vol 20 (19) ◽  
pp. 4722
Author(s):  
Liu ◽  
Xu ◽  
Han ◽  
Wang ◽  
Liu ◽  
...  
Keyword(s):  
Transcriptome Analysis ◽  
Woody Plants ◽  
Growth And Development ◽  
Functional Role ◽  
Betula Pendula ◽  
Leaf Shape ◽  
Genetic Regulation ◽  
Leaf Margin ◽  
Transgenic Lines ◽  
Short Internodes

The CUP-SHAPED COTYLEDON 2 (CUC2) gene, which is negatively regulated by microRNA164 (miR164), has been specifically linked to the regulation of leaf margin serration and the maintenance of phyllotaxy in model plants. However, few studies have investigated these effects in woody plants. In this study, we integrated genomic, transcriptomic, and physiology approaches to explore the function of BpCUC2 gene in Betula pendula growth and development. Our results showed that Betula pendula plants overexpressing BpCUC2, which is targeted by BpmiR164, exhibit shortened internodes and abnormal leaf shapes. Subsequent analysis indicated that the short internodes of BpCUC2 overexpressed transgenic lines and were due to decreased epidermal cell size. Moreover, transcriptome analysis, yeast one-hybrid assays, and ChIP-PCR suggested that BpCUC2 directly binds to the LTRECOREATCOR15 (CCGAC), CAREOSREP1 (CAACTC), and BIHD1OS (TGTCA) motifs of a series of IAA-related and cyclin-related genes to regulate expression. These results may be useful to our understanding of the functional role and genetic regulation of BpCUC2.

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