scholarly journals Soil quality and C-S-R fungal communities in monoculture plantations after conversion from subtropical forest

2021 ◽  
Author(s):  
Ting Liu ◽  
Xiao Wu ◽  
Huangwei Li ◽  
Chen Ning ◽  
Yong Li ◽  
...  
Keyword(s):  
Soil Quality ◽  
Soil Ph ◽  
Mycorrhizal Fungi ◽  
High Throughput Sequencing ◽  
Fungal Communities ◽  
Equation Modeling ◽  
Striking Difference ◽  
Forest Conversion ◽  
Clear Cutting ◽  
Α Diversity

Intensive clear cutting of natural forests and conversion to monoculture plantations are ongoing worldwide, leading to degradation of soil quality and microbial functions. Here, we compared soil quality index (SQI) and fungal community in a natural forest (Forest) and four 5-year-old monoculture plantations, including Camellia oleifera (Oil), Amygdalus persica (Peach), Myrica rubra (Berry) and Cunninghamia lanceolata (Fir), in a subtropical region of China. After conversion, soil pH rose up to 0.31, but organic carbon, total nitrogen, sucrase, acid protease, glutaminase and phosphatase activities decreased by 83%, 59%, 43%, 31%, 64%, 66% and 77%, respectively, in the plantations. Correspondingly, the SQI dropped by 65%. High-throughput sequencing of the ITS1 region demonstrated an increase in α-diversity and a striking difference in β-diversity following conversion. Changes in the dominant fungal taxa following forest conversion to plantations was interpreted by Grime’s C-S-R life history framework. Conversion increased the fungal groups with stress-tolerant (S) and ruderal (R) strategies - mainly copiotrophic saprophytes, such as Ascomycota and Zygomycota, but decreased the fungal groups with competitor (C) strategies - mainly oligotrophic saprophytes and mycorrhizal fungi, such as Basidiomycota. Genera affiliated to those phyla including Pseudophialophora, Rhytisma increased, but Russula decreased. Redundancy analysis and structural equation modeling indicated that the diversity and composition of fungal communities changed with soil quality degradation, which were mainly driven by increased soil pH, decreased available carbon and nutrients (N, P), and related enzymes activities.

scholarly journals Non-symbiotic soil microbes are more strongly influenced by altered tree biodiversity than arbuscular mycorrhizal fungi during initial forest establishment

2019 ◽  
Vol 95 (10) ◽  
Author(s):  
Jake J Grossman ◽  
Allen J Butterfield ◽  
Jeannine Cavender-Bares ◽  
Sarah E Hobbie ◽  
Peter B Reich ◽  
...  
Keyword(s):  
Fungal Community ◽  
Mycorrhizal Fungi ◽  
High Throughput Sequencing ◽  
Arbuscular Mycorrhizal ◽  
Tree Diversity ◽  
Fungal Communities ◽  
Juniperus Virginiana ◽  
Lipid Fatty Acid ◽  
Neutral Lipid Fatty Acid ◽  
Fungal Abundance

ABSTRACT While the relationship between plant and microbial diversity has been well studied in grasslands, less is known about similar relationships in forests, especially for obligately symbiotic arbuscular mycorrhizal (AM) fungi. To assess the effect of varying tree diversity on microbial alpha- and beta-diversity, we sampled soil from plots in a high-density tree diversity experiment in Minnesota, USA, 3 years after establishment. About 3 of 12 tree species are AM hosts; the other 9 primarily associate with ectomycorrhizal fungi. We used phospho- and neutral lipid fatty acid analysis to characterize the biomass and functional identity of the whole soil bacterial and fungal community and high throughput sequencing to identify the species-level richness and composition of the AM fungal community. We found that plots of differing tree composition had different bacterial and fungal communities; plots with conifers, and especially Juniperus virginiana, had lower densities of several bacterial groups. In contrast, plots with a higher density or diversity of AM hosts showed no sign of greater AM fungal abundance or diversity. Our results indicate that early responses to plant diversity vary considerably across microbial groups, with AM fungal communities potentially requiring longer timescales to respond to changes in host tree diversity.

scholarly journals Parasitism to mutualism continuum for Joshua trees inoculated with different communities of arbuscular mycorrhizal fungi from a desert elevation gradient

PLoS ONE ◽  
2021 ◽  
Vol 16 (8) ◽  
pp. e0256068
Author(s):  
Jennifer T. Harrower ◽  
Gregory S. Gilbert
Keyword(s):  
Arbuscular Mycorrhizal Fungi ◽  
Mycorrhizal Fungi ◽  
Species Interactions ◽  
High Throughput Sequencing ◽  
Abiotic Factors ◽  
Elevation Gradient ◽  
Arbuscular Mycorrhizal ◽  
Fungal Communities ◽  
Climate Gradient ◽  
Joshua Trees

Most desert plants form symbiotic relationships with arbuscular mycorrhizal fungi (AMF), yet fungal identity and impacts on host plants remain largely unknown. Despite widespread recognition of the importance of AMF relationships for plant functioning, we do not know how fungal community structure changes across a desert climate gradient, nor the impacts of different fungal communities on host plant species. Because climate change can shape the distribution of species through effects on species interactions, knowing how the ranges of symbiotic partners are geographically structured and the outcomes of those species interactions informs theory and improves management recommendations. Here we used high throughput sequencing to examine the AMF community of Joshua trees along a climate gradient in Joshua Tree National Park. We then used a range of performance measures and abiotic factors to evaluate how different AMF communities may affect Joshua tree fitness. We found that fungal communities change with elevation resulting in a spectrum of interaction outcomes from mutualism to parasitism that changed with the developmental stage of the plant. Nutrient accumulation and the mycorrhizal growth response of Joshua tree seedlings inoculated with fungi from the lowest (warmest) elevations was first negative, but after 9 months had surpassed that of plants with other fungal treatments. This indicates that low elevation fungi are costly for the plant to initiate symbiosis, yet confer benefits over time. The strong relationship between AMF community and plant growth suggests that variation in AMF community may have long term consequences for plant populations along an elevation gradient.

The effects of different human disturbance regimes on root fungal diversity ofRhododendron ovatumin subtropical forests of China

2017 ◽  
Vol 47 (5) ◽  
pp. 659-666 ◽  
Author(s):  
Yanhua Zhang ◽  
Jian Ni ◽  
Fangping Tang ◽  
Lifen Jiang ◽  
Tianrong Guo ◽  
...  
Keyword(s):  
Human Disturbance ◽  
Mycorrhizal Fungi ◽  
Fungal Diversity ◽  
High Throughput Sequencing ◽  
Fungal Communities ◽  
Soil Parameters ◽  
Old Growth ◽  
Subtropical Forests ◽  
Old Growth Forest ◽  
Hair Roots

Ericoid mycorrhizal associations are a symbiotic relationship between soil fungi and ericaceous plants. Diversity of fungi associated with hair roots of ericaceous plants may vary as a result of frequent disturbances by human activities. The fungal diversity and communities associated with hair roots of Rhododendron ovatum were investigated along a human disturbance gradient in subtropical forests of China. Nine hundred fungal operational taxonomic units were determined by high-throughput sequencing, including different phyla such as Ascomycota, Basidiomycota, Zygomycota, Chytridiomycota, and Glomeromycota. The dominant phylum in Cunninghamia lanceolata plantations and old-growth forest was Ascomycota, while Basidiomycota was the dominant phylum in secondary forests. The indicator species analyses showed that more pathogenic indicator fungi appeared in the disturbed forests, whereas more putative ericoid mycorrhizal fungi existed in the old-growth forests. Principal component analysis also showed that the fungal communities in the hair roots of R. ovatum were distinct between natural forests and plantations, suggesting that the fungal communities associated with hair roots of R. ovatum after logging were resilient and could recover to predisturbance status. The results of envfit analysis showed that performance of host plants rather than accompanying plant community and soil parameters of plots was the key determinant of the root-associated fungal community of R. ovatum.

scholarly journals Mycorrhizal Fungal Diversity and Its Relationship with Soil Properties in Camellia oleifera

Agriculture ◽  
2021 ◽  
Vol 11 (6) ◽  
pp. 470
Author(s):  
Rui-Cheng Liu ◽  
Zhi-Yan Xiao ◽  
Abeer Hashem ◽  
Elsayed Fathi Abd_Allah ◽  
Qiang-Sheng Wu
Keyword(s):  
Soil Properties ◽  
Soil Ph ◽  
Mycorrhizal Fungi ◽  
High Throughput Sequencing ◽  
Surface Soil ◽  
Spore Density ◽  
Fungal Colonization ◽  
Camellia Oleifera ◽  
N Content ◽  
Amf Diversity

Arbuscular mycorrhizal fungi (AMF) are well known for their important physiological implications on diversified host plants, while the information on AMF diversity and its relationship with soil properties of Camellia oleifera is yet not fully understood. In the proposed study, high-throughput sequencing of small subunit ribosomal RNA was performed to analyze the AMF diversity of the rhizosphere and endosphere of 20-year-old C. oleifera Xianglin in the field at Wuhan (China) and their relationship with soil physico-chemical properties. As high as 30.73–41.68% of the roots of C. oleifera were colonized by indigenous AMF with a spore density of 66–111 spores/10 g soil. The surface soil (0–20 cm) showed significantly higher root fungal colonization, spore density, soil hyphal length, and easily extractable glomalin-related soil protein content than the sub-surface soil (20–40 cm). Soil pH value, available K, and NO3−-N content affected the root and soil mycorrhizal development, whilst soil pH proved to be the most influential soil property governing their variability. A total of 467 OTUs associated with AMF were detected from the endosphere and rhizosphere, representing 10 genera and 138 species, of which 295 OTUs and 9 genera were jointly observed. The genus Glomus displayed maximum relative abundance (>86%) in both endosphere and rhizosphere. Scutellospora was detected in the endosphere, but absent in the rhizosphere. The endosphere recorded a relatively higher number of OTUs and alpha diversity indices (Shannon, Simpson, and PD index) of AMF than rhizosphere. Our study, hence, revealed that C. oleifera in fields was mainly colonized by Glomus, coupled with comparatively greater AMF diversity in the endosphere than in the rhizosphere, governed predominantly by soil pH, NO3−-N content, and available K content.

scholarly journals A Comparative Analysis of the Microbiome of Kiwifruit at Harvest Under Open-Field and Rain-Shelter Cultivation Systems

2021 ◽  
Vol 12 ◽  
Author(s):  
Yuan Sui ◽  
Qianhua Zhao ◽  
Zhenshuo Wang ◽  
Jia Liu ◽  
Mingguo Jiang ◽  
...  
Keyword(s):  
Comparative Analysis ◽  
Microbial Community ◽  
Open Field ◽  
Internal Transcribed Spacer ◽  
High Throughput Sequencing ◽  
Disease Incidence ◽  
Fungal Communities ◽  
Cultivation Systems ◽  
Α Diversity ◽  
Quality Health

The composition of microbial communities can directly affect fruit quality, health status, and storability. The present study characterized the epiphytes and endophytes of “Hongyang” and “Cuiyu” kiwifruit at harvest under grown under open-field (OF) and rain-shelter (RS) cultivation systems. Disease incidence in kiwifruit was significantly lower (p < 0.05) under the RS system than it was under the OF system. High-throughput sequencing [16S V3-V4 ribosomal region and the fungal internal transcribed spacer (ITS2)] was conducted to compare the composition of the epiphytic and endophytic microbial community of kiwifruit under the two cultivation systems. Results indicated that the abundance of Actinobacteria, Bacteroidetes, Enterobacteriales, Acetobacterales, Sphingomonas, Pseudomonas, and Sphingobacterium was higher under the RS system, relative to the OF system, while the abundance of Capnodiales, Hypocreales, Vishniacozyma, and Plectosphaerella was also higher under the RS system. Some of these bacterial and fungal taxa have been reported to as act as biocontrol agents and reduce disease incidence. Notably, the α-diversity of the epiphytic bacterial and fungal communities on kiwifruit was higher under RS cultivation. In summary, RS cultivation reduced natural disease incidence in kiwifruit, which may be partially attributed to differences in the structure and composition of the microbial community present in and on kiwifruit.

Temporal dynamics of mycorrhizal fungal communities and co-associations with grassland plant communities following experimental manipulation of rainfall

2019 ◽  
Author(s):  
Coline Deveautour ◽  
Sally Power ◽  
Kirk Barnett ◽  
Raul Ochoa-Hueso ◽  
Suzanne Donn ◽  
...  
Keyword(s):  
Community Composition ◽  
Plant Community ◽  
Plant Communities ◽  
Fungal Community ◽  
Mycorrhizal Fungi ◽  
Temporal Dynamics ◽  
Arbuscular Mycorrhizal ◽  
Fungal Communities ◽  
Plant Responses ◽  
Rainfall Regimes

Climate models project overall a reduction in rainfall amounts and shifts in the timing of rainfall events in mid-latitudes and sub-tropical dry regions, which threatens the productivity and diversity of grasslands. Arbuscular mycorrhizal fungi may help plants to cope with expected changes but may also be impacted by changing rainfall, either via the direct effects of low soil moisture on survival and function or indirectly via changes in the plant community. In an Australian mesic grassland (former pasture) system, we characterised plant and arbuscular mycorrhizal (AM) fungal communities every six months for nearly four years to two altered rainfall regimes: i) ambient, ii) rainfall reduced by 50% relative to ambient over the entire year and iii) total summer rainfall exclusion. Using Illumina sequencing, we assessed the response of AM fungal communities sampled from contrasting rainfall treatments and evaluated whether variation in AM fungal communities was associated with variation in plant community richness and composition. We found that rainfall reduction influenced the fungal communities, with the nature of the response depending on the type of manipulation, but that consistent results were only observed after more than two years of rainfall manipulation. We observed significant co-associations between plant and AM fungal communities on multiple dates. Predictive co-correspondence analyses indicated more support for the hypothesis that fungal community composition influenced plant community composition than vice versa. However, we found no evidence that altered rainfall regimes were leading to distinct co-associations between plants and AM fungi. Overall, our results provide evidence that grassland plant communities are intricately tied to variation in AM fungal communities. However, in this system, plant responses to climate change may not be directly related to impacts of altered rainfall regimes on AM fungal communities. Our study shows that AM fungal communities respond to changes in rainfall but that this effect was not immediate. The AM fungal community may influence the composition of the plant community. However, our results suggest that plant responses to altered rainfall regimes at our site may not be resulting via changes in the AM fungal communities.

scholarly journals Fungal Diversity in the Phyllosphere of Pinus heldreichii H. Christ—An Endemic and High-Altitude Pine of the Mediterranean Region

Diversity ◽  
2020 ◽  
Vol 12 (5) ◽  
pp. 172 ◽  
Author(s):  
Jelena Lazarević ◽  
Audrius Menkis
Keyword(s):  
High Altitude ◽  
Bark Beetles ◽  
Fungal Pathogens ◽  
High Throughput Sequencing ◽  
Fungal Communities ◽  
High Quality ◽  
The Balkans ◽  
Fungal Community Structure ◽  
Growing Conditions ◽  
Coniferous Tree Species

Pinus heldreichii is a high-altitude coniferous tree species naturaly occurring in small and disjuncted populations in the Balkans and southern Italy. The aim of this study was to assess diversity and composition of fungal communities in living needles of P. heldreichii specifically focusing on fungal pathogens. Sampling was carried out at six different sites in Montenegro, where 2-4 year-old living needles of P. heldreichii were collected. Following DNA isolation, it was amplified using ITS2 rDNA as a marker and subjected to high-throughput sequencing. Sequencing resulted in 31,831 high quality reads, which after assembly were found to represent 375 fungal taxa. The detected fungi were 295 (78.7%) Ascomycota, 79 (21.0%) Basidiomycota and 1 (0.2%) Mortierellomycotina. The most common fungi were Lophodermium pinastri (12.5% of all high-quality sequences), L. conigenum (10.9%), Sydowia polyspora (8.8%), Cyclaneusma niveum (5.5%), Unidentified sp. 2814_1 (5.4%) and Phaeosphaeria punctiformis (4.4%). The community composition varied among different sites, but in this respect two sites at higher altitudes (harsh growing conditions) were separated from three sites at lower altitudes (milder growing conditions), suggesting that environmental conditions were among major determinants of fungal communities associated with needles of P. heldreichii. Trees on one study site were attacked by bark beetles, leading to discolouration and frequent dieback of needles, thereby strongly affecting the fungal community structure. Among all functional groups of fungi, pathogens appeared to be an important component of fungal communities in the phyllosphere of P. heldreichii, especially in those trees under strong abiotic and biotic stress.

scholarly journals The Banana Root Endophytome: Differences between Mother Plants and Suckers and Evaluation of Selected Bacteria to Control Fusarium oxysporum f.sp. cubense

2021 ◽  
Vol 7 (3) ◽  
pp. 194
Author(s):  
Carmen Gómez-Lama Cabanás ◽  
Antonio J. Fernández-González ◽  
Martina Cardoni ◽  
Antonio Valverde-Corredor ◽  
Javier López-Cepero ◽  
...  
Keyword(s):  
Fusarium Oxysporum ◽  
Canary Islands ◽  
High Throughput Sequencing ◽  
Fungal Communities ◽  
Phenological Stage ◽  
Mother Plants ◽  
Fusarium Wilt Of Banana ◽  
Identification And Characterization

This study aimed to disentangle the structure, composition, and co-occurrence relationships of the banana (cv. Dwarf Cavendish) root endophytome comparing two phenological plant stages: mother plants and suckers. Moreover, a collection of culturable root endophytes (>1000) was also generated from Canary Islands. In vitro antagonism assays against Fusarium oxysporum f.sp. cubense (Foc) races STR4 and TR4 enabled the identification and characterization of potential biocontrol agents (BCA). Eventually, three of them were selected and evaluated against Fusarium wilt of banana (FWB) together with the well-known BCA Pseudomonas simiae PICF7 under controlled conditions. Culturable and non-culturable (high-throughput sequencing) approaches provided concordant information and showed low microbial diversity within the banana root endosphere. Pseudomonas appeared as the dominant genus and seemed to play an important role in the banana root endophytic microbiome according to co-occurrence networks. Fungal communities were dominated by the genera Ophioceras, Cyphellophora, Plecosphaerella, and Fusarium. Overall, significant differences were found between mother plants and suckers, suggesting that the phenological stage determines the recruitment and organization of the endophytic microbiome. While selected native banana endophytes showed clear antagonism against Foc strains, their biocontrol performance against FWB did not improve the outcome observed for a non-indigenous reference BCA (strain PICF7).

scholarly journals Inoculation with Mycorrhizal Fungi and Irrigation Management Shape the Bacterial and Fungal Communities and Networks in Vineyard Soils

2021 ◽  
Vol 9 (6) ◽  
pp. 1273
Author(s):  
Nazareth Torres ◽  
Runze Yu ◽  
S. Kaan Kurtural
Keyword(s):  
Mycorrhizal Fungi ◽  
Time Course ◽  
Management Practices ◽  
Irrigation Management ◽  
Fungal Communities ◽  
Soil Microbiome ◽  
Wine Quality ◽  
Network Analyses ◽  
Vineyard Soil ◽  
Vineyard Soils

Vineyard-living microbiota affect grapevine health and adaptation to changing environments and determine the biological quality of soils that strongly influence wine quality. However, their abundance and interactions may be affected by vineyard management. The present study was conducted to assess whether the vineyard soil microbiome was altered by the use of biostimulants (arbuscular mycorrhizal fungi (AMF) inoculation vs. non-inoculated) and/or irrigation management (fully irrigated vs. half irrigated). Bacterial and fungal communities in vineyard soils were shaped by both time course and soil management (i.e., the use of biostimulants and irrigation). Regarding alpha diversity, fungal communities were more responsive to treatments, whereas changes in beta diversity were mainly recorded in the bacterial communities. Edaphic factors rarely influence bacterial and fungal communities. Microbial network analyses suggested that the bacterial associations were weaker than the fungal ones under half irrigation and that the inoculation with AMF led to the increase in positive associations between vineyard-soil-living microbes. Altogether, the results highlight the need for more studies on the effect of management practices, especially the addition of AMF on cropping systems, to fully understand the factors that drive their variability, strengthen beneficial microbial networks, and achieve better soil quality, which will improve crop performance.

scholarly journals Impact of Integrated Agronomic Practices on Soil Fertility and Respiration on the Indo-Gangetic Plain of North India

Agronomy ◽  
2021 ◽  
Vol 11 (2) ◽  
pp. 402
Author(s):  
Rama Kant Dubey ◽  
Pradeep Kumar Dubey ◽  
Rajan Chaurasia ◽  
Ch Srinivasa Rao ◽  
Purushothaman Chirakkuzhyil Abhilash
Keyword(s):  
Soil Respiration ◽  
Soil Quality ◽  
Mycorrhizal Fungi ◽  
Field Experiments ◽  
Block Design ◽  
North India ◽  
Gangetic Plain ◽  
Agronomic Practices ◽  
Soil Sustainability ◽  
Indo Gangetic Plain

Global agricultural production is accountable for the emission of ~30% of greenhouse gases. Therefore, the wide-scale adoptions of low-input, soil-friendly, and resource-conserving agronomic practices are imperative for the ‘planet healthy food production’ and also for reducing the carbon emissions from agricultural soil. In this context, the present study aimed to analyze the impacts of integrated agronomic interventions i.e., the application of arbuscular mycorrhizal fungi (AMF) + reduced tillage (RT), biochar + RT, and AMF + biochar + RT, on spatiotemporal variations in soil-quality and soil-sustainability indicators, including microbial and soil respiration, in the Indo-Gangetic Plain (IGP) of North India. For this, field experiments on the above-mentioned agronomic interventions were employed using three different staple crops (Zea mays, Vigna mungo, and Brassica juncea) growing in three different agro-climatic zones of IGP (Varanasi, Sultanpur, and Gorakhpur) in a randomized block design. Periodic data collection was done to analyze the changes in physiochemical, biological, and biochemical properties of the soil, and statistical analyses were done accordingly. Irrespective of the sites, the experimental results proved that the integrated application of AMF + biochar + RT in V. mungo resulted in the highest soil organic carbon (i.e., 135% increment over the control) and microbial biomass carbon (24%), whereas the same application (i.e., AMF + biochar + RT) in Z. mays had the maximum reduction in microbial (32%) and soil (44%) respiration. On the other hand, enhanced occurrence of glomalin activity (98%) was noted in Z. mays cropping for all the sites. Significant negative correlation between soil respiration and glomalin activity under AMF + biochar + RT (−0.85), AMF + RT (−0.82), and biochar + RT (−0.62) was an indication of glomalin’s role in the reduced rate of soil respiration. The research results proved that the combined application of AMF + biochar + RT was the best practice for enhancing soil quality while reducing respiration. Therefore, the development of suitable packages of integrated agronomic practices is essential for agricultural sustainability.

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