scholarly journals Phylogeography of southern New Zealand: Implications of Pliocene and Pleistocene Processes and Evolutionary Concordance Across Independent  Loci

2021 ◽  
Author(s):  
◽  
Shay B. O'Neill

<p>The endemic fauna of the South Island has proven to be an ideal taxonomic group to examine the impact of climatic and geological processes on the evolution of New Zealand's biota since the Pliocene. This thesis examines the phylogeography of McCann's skink (Oligosoma maccanni) in order to provide insight into the relative contribution of Pliocene and Pleistocene processes on patterns of genetic structure in South Island biota. This thesis also investigates the phylogeography of the brown skink (O. zelandicum) to examine whether Cook Strait landbridges facilitated gene flow between the North and South Island in the late-Pleistocene. This thesis also investigates the presence of genealogical concordance across independent loci for the endemic alpine stick insect, Niveaphasma. I obtained mitochondrial DNA (mtDNA) sequence data (ND2 and ND4; 1284 bp) from across the range of both skink species and mtDNA (COI; 762 bp) and nuclear sequence data (EF1 ; 590 bp) from across the range of Niveaphasma. I used DGGE in order to resolve nuclear EF1 alleles and examined phylogeographic patterns in each species using Neighbour-Joining, Maximum Likelihood and Bayesian methods. Substantial phylogeographic structure was found within O. maccanni, with divergences among clades estimated to have occurred during the Pliocene. Populations in the Otago/Southland region formed a well-supported lineage within O. maccanni. A genetic break was evident between populations in east and west Otago, while north-south genetic breaks were evident within the Canterbury region. There was relatively minor phylogeographic structure within O. zelandicum. Our genetic data supports a single colonization of the North Island by O. zelandicum from the South Island, with the estimated timing of this event (0.46 Mya) consistent with the initial formation of Cook Strait. There was substantial genetic structuring identified within Niveaphasma, with a well-supported lineage present in the Otago/Southland region. There was also a genetic break between populations in Canterbury and eastern Otago with those in central Otago and Southland. The genetic data provided strong genealogical concordance between mtDNA haplotypes and nuclear alleles suggesting an accurate depiction of the historical isolation identified between the major clades of Niveaphasma. This finding offers compelling evidence for the use of nuclear gene  phylogeography alongside mtDNA for future evolutionary studies within New Zealand.</p>

2021 ◽  
Author(s):  
◽  
Shay B. O'Neill

<p>The endemic fauna of the South Island has proven to be an ideal taxonomic group to examine the impact of climatic and geological processes on the evolution of New Zealand's biota since the Pliocene. This thesis examines the phylogeography of McCann's skink (Oligosoma maccanni) in order to provide insight into the relative contribution of Pliocene and Pleistocene processes on patterns of genetic structure in South Island biota. This thesis also investigates the phylogeography of the brown skink (O. zelandicum) to examine whether Cook Strait landbridges facilitated gene flow between the North and South Island in the late-Pleistocene. This thesis also investigates the presence of genealogical concordance across independent loci for the endemic alpine stick insect, Niveaphasma. I obtained mitochondrial DNA (mtDNA) sequence data (ND2 and ND4; 1284 bp) from across the range of both skink species and mtDNA (COI; 762 bp) and nuclear sequence data (EF1 ; 590 bp) from across the range of Niveaphasma. I used DGGE in order to resolve nuclear EF1 alleles and examined phylogeographic patterns in each species using Neighbour-Joining, Maximum Likelihood and Bayesian methods. Substantial phylogeographic structure was found within O. maccanni, with divergences among clades estimated to have occurred during the Pliocene. Populations in the Otago/Southland region formed a well-supported lineage within O. maccanni. A genetic break was evident between populations in east and west Otago, while north-south genetic breaks were evident within the Canterbury region. There was relatively minor phylogeographic structure within O. zelandicum. Our genetic data supports a single colonization of the North Island by O. zelandicum from the South Island, with the estimated timing of this event (0.46 Mya) consistent with the initial formation of Cook Strait. There was substantial genetic structuring identified within Niveaphasma, with a well-supported lineage present in the Otago/Southland region. There was also a genetic break between populations in Canterbury and eastern Otago with those in central Otago and Southland. The genetic data provided strong genealogical concordance between mtDNA haplotypes and nuclear alleles suggesting an accurate depiction of the historical isolation identified between the major clades of Niveaphasma. This finding offers compelling evidence for the use of nuclear gene  phylogeography alongside mtDNA for future evolutionary studies within New Zealand.</p>


1959 ◽  
Vol 96 (2) ◽  
pp. 118-124 ◽  
Author(s):  
H. W. Wellman

AbstractA map is presented showing a series of airborne magnetometer profiles from the north end of the South Island of New Zealand to the mouth of Waikato River. The two southern profiles are related to the exposed Upper Palaeozoic igneous rocks which are considered to extend north across Cook Strait and along the west coast of the North Island to cause the anomalies in the northern profiles. The North Island profiles are considered to reflect the Kawhia Syncline and a major anticline to the east. The eastward displacement of the magnetic low relative to the synclinal axis at the surface is considered due to the eastward dip of the axial plane of the syncline.


2021 ◽  
Vol 731 ◽  
pp. 71-96
Author(s):  
Gerlien Verhaegen ◽  
Martin Haase

Four new species and one new subspecies of tateid freshwater gastropods are described from the north of the South Island of New Zealand, Catapyrgus jami sp. nov., Opacuincola lisannea sp. nov., O. gretathunbergae sp. nov., O. mete kahurangi ssp. nov. and Obtusopyrgus farri sp. nov. The species are integratively defined based on a combination of shell morphological, anatomical and mitochondrial DNA data. Morphological and anatomical data were generated by morphometrics, scanning electron microscopy, as well as micro-computed tomography. The genetic data were basis of phylogenetic analyses and incorporated into the diagnoses. The new taxa occur in springs or spring-like habitats, i.e., shallow, slow-flowing sections of small streams except for O. mete kahurangi subsp. nov., which was collected from rough rocks in a river, where the snails sat in small depressions. None of the species exceeded 2.75 mm in length. Opacuincola gretathunbergae sp. nov. and Obtusopyrgus farri sp. nov. are pigmented and true crenobionts, while C. jami sp. nov. and the sympatric Opacuincola lisannea sp. nov. have eyes of reduced size and lack epidermal pigment, hence, probably dwell in the transitional zone of epigean and groundwaters.


2000 ◽  
Vol 151 (12) ◽  
pp. 502-507
Author(s):  
Christian Küchli

Are there any common patterns in the transition processes from traditional and more or less sustainable forest management to exploitative use, which can regularly be observed both in central Europe and in the countries of the South (e.g. India or Indonesia)? Attempts were made with a time-space-model to typify those force fields, in which traditional sustainable forest management is undermined and is then transformed into a modern type of sustainable forest management. Although it is unlikely that the history of the North will become the future of the South, the glimpse into the northern past offers a useful starting point for the understanding of the current situation in the South, which in turn could stimulate the debate on development. For instance, the patterns which stand behind the conflicts on forest use in the Himalayas are very similar to the conflicts in the Alps. In the same way, the impact of socio-economic changes on the environment – key word ‹globalisation› – is often much the same. To recognize comparable patterns can be very valuable because it can act as a stimulant for the search of political, legal and technical solutions adapted to a specific situation. For the global community the realization of the way political-economic alliances work at the head of the ‹globalisationwave›can only signify to carry on trying to find a common language and understanding at the negotiation tables. On the lee side of the destructive breaker it is necessary to conserve and care for what survived. As it was the case in Switzerland these forest islands could once become the germination points for the genesis of a cultural landscape, where close-to-nature managed forests will constitute an essential element.


Atmosphere ◽  
2021 ◽  
Vol 12 (2) ◽  
pp. 172
Author(s):  
Yuan Xu ◽  
Jieming Chou ◽  
Fan Yang ◽  
Mingyang Sun ◽  
Weixing Zhao ◽  
...  

Quantitatively assessing the spatial divergence of the sensitivity of crop yield to climate change is of great significance for reducing the climate change risk to food production. We use socio-economic and climatic data from 1981 to 2015 to examine how climate variability led to variation in yield, as simulated by an economy–climate model (C-D-C). The sensitivity of crop yield to the impact of climate change refers to the change in yield caused by changing climatic factors under the condition of constant non-climatic factors. An ‘output elasticity of comprehensive climate factor (CCF)’ approach determines the sensitivity, using the yields per hectare for grain, rice, wheat and maize in China’s main grain-producing areas as a case study. The results show that the CCF has a negative trend at a rate of −0.84/(10a) in the North region, while a positive trend of 0.79/(10a) is observed for the South region. Climate change promotes the ensemble increase in yields, and the contribution of agricultural labor force and total mechanical power to yields are greater, indicating that the yield in major grain-producing areas mainly depends on labor resources and the level of mechanization. However, the sensitivities to climate change of different crop yields to climate change present obvious regional differences: the sensitivity to climate change of the yield per hectare for maize in the North region was stronger than that in the South region. Therefore, the increase in the yield per hectare for maize in the North region due to the positive impacts of climate change was greater than that in the South region. In contrast, the sensitivity to climate change of the yield per hectare for rice in the South region was stronger than that in the North region. Furthermore, the sensitivity to climate change of maize per hectare yield was stronger than that of rice and wheat in the North region, and that of rice was the highest of the three crop yields in the South region. Finally, the economy–climate sensitivity zones of different crops were determined by the output elasticity of the CCF to help adapt to climate change and prevent food production risks.


2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Michelle Seiler ◽  
Georg Staubli ◽  
Julia Hoeffe ◽  
Gianluca Gualco ◽  
Sergio Manzano ◽  
...  

Abstract Background We aimed to document the impact of the coronavirus disease 2019 (COVID-19) pandemic on regions within a European country. Methods Parents arriving at two pediatric emergency departments (EDs) in North of Switzerland and two in South of Switzerland completed an online survey during the first peak of the pandemic (April–June 2020). They were asked to rate their concern about their children or themselves having COVID-19. Results A total of 662 respondents completed the survey. Parents in the South were significantly more exposed to someone tested positive for COVID-19 than in the North (13.9 and 4.7%, respectively; P <  0.001). Parents in the South were much more concerned than in the North that they (mean 4.61 and 3.32, respectively; P <  0.001) or their child (mean 4.79 and 3.17, respectively; P <  0.001) had COVID-19. Parents reported their children wore facemasks significantly more often in the South than in the North (71.5 and 23.5%, respectively; P <  0.001). Conclusion The COVID-19 pandemic resulted in significant regional differences among families arriving at EDs in Switzerland. Public health agencies should consider regional strategies, rather than country-wide guidelines, in future pandemics and for vaccination against COVID-19 for children.


2021 ◽  
Author(s):  
Matthew Howse

<p><b>Social wasps are considered among the most successful and impactful invasive species in the world. One species, Polistes dominula has spread from its native Mediterranean range to every continent except Antarctica. This wasp reached New Zealand in the last decade where it has established in the north of the South Island, however, reports of its presence are increasing throughout the country. Due to its recent arrival in New Zealand, little is known about where this species is likely to establish or what impacts it may have on local insect communities. In this thesis, I conducted two studies to investigate these questions, providing valuable information that may inform future management of this invasive species. </b></p><p>In chapter 2, I used two bioclimatic modelling methods to predict areas of suitable habitat across four regions in the southern hemisphere. These models were informed by global temperature and precipitation data as well as global distribution occurrence data of P. dominula. These data were used to estimate conditions most highly correlated with the presence of this wasp. The models identified large areas across the target regions that were climatically suitable for the establishment of P. dominula. Many of these areas are not known to currently contain populations of this species, representing habitat potentially vulnerable to further invasion by P. dominula. Areas across South America, South Africa and Australia were predicted to be climatically suitable. In New Zealand, much of the North Island and eastern parts of the South Island were predicted to be suitable habitat for this wasp. These results suggest that P. dominula could potentially establish across more of the country and expand its invaded range. Information provided by these models may guide conservation and biosecurity management by highlighting key areas where prevention and mitigation should be prioritized. </p><p>In chapter 3, I used molecular diet analysis to investigate the range of prey being utilised by P. dominula in New Zealand. Using DNA barcoding, larval gut contents of P. dominula and another closely related species, Polistes chinensis, were analysed to identify what species were present in the diet of both wasps. Butterflies and moths (Lepidoptera) were found to be the most highly represented order in both species’ diets. True bugs (Hemiptera) and flies (Diptera) were also abundant. Both wasps were shown to consume a range of native and introduced species including a number of agricultural pests. P. dominula was found to utilise a wider range of prey than P. chinensis. This more diverse prey range, combined with known differences in nesting behaviour, suggest that P. dominula may represent a more significant threat to invertebrate diversity than the already well-established P. chinensis. These results may inform conservation and biosecurity managers on which species are most at risk where this new invasive wasp becomes established. </p><p>This thesis provides insights into the potential impacts of a new invasive species to New Zealand. Both chapters represent the first time that these methods have been used to study P. dominula. This work highlights the need for continued monitoring of wasp populations throughout New Zealand, especially in regions highlighted as vulnerable to P. dominula establishment. We also suggest the need to prioritise the conservation of ‘at-risk’ species in coastal and human-altered habitats. Increased public engagement through the citizen-science initiatives should be encouraged while more research into management and control methods is recommended.</p>


Author(s):  
Paul D. Escott

This chapter emphasizes the analysis of the wartime forces in both sections that affected unity or division. It raises questions about the roots of the large amount of internal violence or irregular warfare in the South. For the North, it probes the nature of nationalism and asks about that section’s social, political, and religious divisions. Factors affecting both the Republican and the Democratic Parties of the North deserve new attention, as do the role of women in both sections, ethnic groups in the North especially, and the impact of emancipation and racism.


2009 ◽  
Vol 22 (3) ◽  
pp. 143 ◽  
Author(s):  
A. D. Mitchell ◽  
P. B. Heenan ◽  
B. G. Murray ◽  
B. P. J. Molloy ◽  
P. J. de Lange

Phylogenetic analyses of nuclear DNA external transcribed spacer (ETS) and chloroplast DNA trnL–trnF markers were undertaken to reconstruct the evolutionary history of the South Pacific genus Melicytus. Bayesian analyses of the ETS sequence data produced a phylogenetic tree with several well supported groups, including clades comprising: (1) species from Australia, Tasmania and Lord Howe Island; (2) the Norfolk Island M. latifolius and New Zealand off-shore island M. novae-zelandiae subsp. novae-zelandiae; (3) the large-leaved M. ramiflorus complex; (4) M. fasciger and M. micranthus; and (5) M. obovatus and allies from the Cook Strait region. Phylogenetic analysis of trnL–trnF sequence data also retrieved some of these groups although, in general, was not as well resolved. The relationships of M. lanceolatus are equivocal, as in the ETS phylogeny it is sister to a clade comprising the large-leaved tree species M. fasciger and M. ramiflorus complex and the small-leaved M. micranthus, whereas in the trnL–trnF phylogeny it is sister to a clade of small-leaved shrub species such as M. alpinus and M. crassifolius. Several biogeographic patterns are evident, with dispersal to the west from New Zealand, to Australia, involving small-leaved shrub species. Dispersal to the north from New Zealand, to Norfolk Island and Fiji, involves large-leaved tree species. The sex expression is documented for all named species and undescribed entities, with these being either hermaphroditic or dioecious. When sex expression is mapped onto the phylogeny, the hermaphroditic system is inferred to have evolved from the dioecious system. New chromosome counts are presented for M. angustifolius (2n = 64) and M. dentatus (2n = 32), and earlier counts of 2n = 64 are confirmed for M. crassifolius and M. alpinus. An additional 17 counts are provided for two natural hybrids and several undescribed entities from Australia and New Zealand. The polyploid chromosome number of 2n = 64 occurs most frequently in small-leaved divariate plants with hermaphroditic flowers. When chromosome numbers are plotted onto the phylogeny it is inferred that high polyploids (e.g. 2n = 64) and small-leaved shrubs have evolved from large-leaved trees with functional diploid (e.g. 2n = 32) chromosome numbers.


2008 ◽  
Vol 48 (1) ◽  
pp. 53 ◽  
Author(s):  
Chris Uruski ◽  
Callum Kennedy ◽  
Rupert Sutherland ◽  
Vaughan Stagpoole ◽  
Stuart Henrys

The East Coast of North Island, New Zealand, is the site of subduction of the Pacific below the Australian plate, and, consequently, much of the basin is highly deformed. An exception is the Raukumara Sub-basin, which forms the northern end of the East Coast Basin and is relatively undeformed. It occupies a marine plain that extends to the north-northeast from the northern coast of the Raukumara Peninsula, reaching water depths of about 3,000 m, although much of the sub-basin lies within the 2,000 m isobath. The sub-basin is about 100 km across and has a roughly triangular plan, bounded by an east-west fault system in the south. It extends about 300 km to the northeast and is bounded to the east by the East Cape subduction ridge and to the west by the volcanic Kermadec Ridge. The northern seismic lines reveal a thickness of around 8 km increasing to 12–13 km in the south. Its stratigraphy consists of a fairly uniformly bedded basal section and an upper, more variable unit separated by a wedge of chaotically bedded material. In the absence of direct evidence from wells and samples, analogies are drawn with onshore geology, where older marine Cretaceous and Paleogene units are separated from a Neogene succession by an allochthonous series of thrust slices emplaced around the time of initiation of the modern plate boundary. The Raukumara Sub-basin is not easily classified. Its location is apparently that of a fore-arc basin along an ocean-to-ocean collision zone, although its sedimentary fill must have been derived chiefly from erosion of the New Zealand land mass. Its relative lack of deformation introduces questions about basin formation and petroleum potential. Although no commercial discoveries have been made in the East Coast Basin, known source rocks are of marine origin and are commonly oil prone, so there is good potential for oil as well as gas in the basin. New seismic data confirm the extent of the sub-basin and its considerable sedimentary thickness. The presence of potential trapping structures and direct hydrocarbon indicators suggest that the Raukumara Sub-basin may contain large volumes of oil and gas.


Sign in / Sign up

Export Citation Format

Share Document