scholarly journals Multivariate Analysis of Seed Chemical Diversity among Jatropha curcas in Botswana

Agronomy ◽  
2021 ◽  
Vol 11 (8) ◽  
pp. 1570
Author(s):  
Shota Tadano ◽  
Gwafila Chiyapo ◽  
Yudai Ishimoto ◽  
Takafumi Konaka ◽  
Charles Mazereku ◽  
...  
Keyword(s):  
Jatropha Curcas ◽  
Seed Weight ◽  
Phorbol Esters ◽  
Chemical Properties ◽  
Principal Component ◽  
Chemical Diversity ◽  
Chemical Compositions ◽  
Severe Drought ◽  
Bioenergy Feedstock ◽  
Specific Chemical

Jatropha (Jatropha curcas L.) has been identified as a potential bioenergy feedstock in arid regions, but knowledge of the diversity of its chemical characteristics is limited. In this study, 61 Jatropha accessions growing in Botswana, where both severe drought and winter frosts frequently occur, were analyzed for their seed chemical properties. Histogram analyses and meta-analysis comparisons with seeds from other countries/continents showed that the median/mean dry seed weight, toxic compound phorbol esters, and C18:0 fatty acid levels in the Botswanan accessions were lower than those from other countries/continents. A clustered heat map analysis indicated five clades for the Botswanan accessions, and their physicochemical traits were also categorized into five groups. Many positive and negative correlations were observed among the chemical traits, including negative correlations between the C18:3 (linolenic acid) content and yield-related traits (lipid content and dry seed weight). Principal component analysis highlighted the existence of accessions with highly deviated seed chemical compositions, such as those enriched in C18:0/C18:1 and C16:0/C16:1/C18:3 fatty acids. Overall, the present study suggests considerable diversity in the seed chemical compositions of Botswanan Jatropha accessions. Various accessions could be useful as feedstock for specific industrial products, as well as for breeding materials for the fortification of specific chemical ingredients.

scholarly journals Genetic variability and divergence analyses in Jatropha curcas based on floral and yield traits

Genetika ◽  
2013 ◽  
Vol 45 (3) ◽  
pp. 655-666 ◽  
Author(s):  
Ramanuj Maurya ◽  
Saurabh Verma ◽  
Astha Gupta ◽  
Bajrang Singh ◽  
Hemant Yadav
Keyword(s):  
Genetic Variability ◽  
Total Variation ◽  
Principal Components ◽  
Jatropha Curcas ◽  
Seed Weight ◽  
Oil Content ◽  
Principal Component ◽  
Mean Value ◽  
Cluster Distance ◽  
Seed Width

Genetic variability of 80 accessions of Jatropha curcas showed that oil content varied between 20.8-36.1% (X=26.2?0.38). Thirty seven accessions showed seed weight/plant above average mean value (180.2g) and 26 accessions showed oil content above average mean (26.2%). The hierarchical clustering grouped all the accessions into 4 clusters. Clustering showed that majority of accessions i.e. 56 (70%) were genetically close to each other and grouped in two clusters. The maximum intra cluster distance was recorded in cluster IV (30.15). The inter cluster distance varied from 47.59 (between cluster I and cluster II) to 211.27 (between cluster III and cluster I). The cluster III showed maximum genetic distance with cluster I, followed by cluster IV and cluster II suggesting comparatively wider genetic diversity among them. The Principal Component Analysis (PCA) showed that first four principal components (PCs) accounted for more than 93% of the total variation. The first principal components accounted for 42.5% of the total variation mainly due to seed length, seed width, seed weight/plant and number of seeds/plant which had maximum and positive weight on this component. Oil content had negative weight on PC1. Thus, PC1 related to the accessions with thick seeds, moderate to high seed yielder with low oil content.

scholarly journals EXPRESS: Exploration of Principal Component Analysis: Deriving PCA Visually Using Spectra

2021 ◽  
pp. 000370282098784
Author(s):  
James Renwick Beattie ◽  
Francis Esmonde-White
Keyword(s):  
Principal Components ◽  
Principal Component ◽  
Original Data ◽  
Specific Chemical ◽  
Successive Refinement ◽  
Minimal Loss ◽  
Components Analysis ◽  
The Mathematical Model ◽  
Application Specific ◽  
Reconstructed Data

Spectroscopy rapidly captures a large amount of data that is not directly interpretable. Principal Components Analysis (PCA) is widely used to simplify complex spectral datasets into comprehensible information by identifying recurring patterns in the data with minimal loss of information. The linear algebra underpinning PCA is not well understood by many applied analytical scientists and spectroscopists who use PCA. The meaning of features identified through PCA are often unclear. This manuscript traces the journey of the spectra themselves through the operations behind PCA, with each step illustrated by simulated spectra. PCA relies solely on the information within the spectra, consequently the mathematical model is dependent on the nature of the data itself. The direct links between model and spectra allow concrete spectroscopic explanation of PCA, such the scores representing ‘concentration’ or ‘weights’. The principal components (loadings) are by definition hidden, repeated and uncorrelated spectral shapes that linearly combine to generate the observed spectra. They can be visualized as subtraction spectra between extreme differences within the dataset. Each PC is shown to be a successive refinement of the estimated spectra, improving the fit between PC reconstructed data and the original data. Understanding the data-led development of a PCA model shows how to interpret application specific chemical meaning of the PCA loadings and how to analyze scores. A critical benefit of PCA is its simplicity and the succinctness of its description of a dataset, making it powerful and flexible.

scholarly journals Untargeted Metabolomics Approach for the Discovery of Environment-Related Pyran-2-ones Chemodiversity in a Marine-Sourced Penicillium restrictum

Marine Drugs ◽  
2021 ◽  
Vol 19 (7) ◽  
pp. 378
Author(s):  
Van-Tuyen Le ◽  
Samuel Bertrand ◽  
Thibaut Robiou du Pont ◽  
Fabrice Fleury ◽  
Nathalie Caroff ◽  
...  
Keyword(s):  
Culture Medium ◽  
Blue Mussel ◽  
Culture Media ◽  
Principal Component ◽  
Chemical Diversity ◽  
Untargeted Metabolomics ◽  
High Chemical ◽  
Medium Mass ◽  
Metabolomics Study ◽  
Penicillium Restrictum

Very little is known about chemical interactions between fungi and their mollusc host within marine environments. Here, we investigated the metabolome of a Penicillium restrictum MMS417 strain isolated from the blue mussel Mytilus edulis collected on the Loire estuary, France. Following the OSMAC approach with the use of 14 culture media, the effect of salinity and of a mussel-derived medium on the metabolic expression were analysed using HPLC-UV/DAD-HRMS/MS. An untargeted metabolomics study was performed using principal component analysis (PCA), orthogonal projection to latent structure discriminant analysis (O-PLSDA) and molecular networking (MN). It highlighted some compounds belonging to sterols, macrolides and pyran-2-ones, which were specifically induced in marine conditions. In particular, a high chemical diversity of pyran-2-ones was found to be related to the presence of mussel extract in the culture medium. Mass spectrometry (MS)- and UV-guided purification resulted in the isolation of five new natural fungal pyran-2-one derivatives—5,6-dihydro-6S-hydroxymethyl-4-methoxy-2H-pyran-2-one (1), (6S, 1’R, 2’S)-LL-P880β (3), 5,6-dihydro-4-methoxy-6S-(1’S, 2’S-dihydroxy pent-3’(E)-enyl)-2H-pyran-2-one (4), 4-methoxy-6-(1’R, 2’S-dihydroxy pent-3’(E)-enyl)-2H-pyran-2-one (6) and 4-methoxy-2H-pyran-2-one (7)—together with the known (6S, 1’S, 2’S)-LL-P880β (2), (1’R, 2’S)-LL-P880γ (5), 5,6-dihydro-4-methoxy-2H-pyran-2-one (8), (6S, 1’S, 2’R)-LL-P880β (9), (6S, 1’S)-pestalotin (10), 1’R-dehydropestalotin (11) and 6-pentyl-4-methoxy-2H-pyran-2-one (12) from the mussel-derived culture medium extract. The structures of 1-12 were determined by 1D- and 2D-MMR experiments as well as high-resolution tandem MS, ECD and DP4 calculations. Some of these compounds were evaluated for their cytotoxic, antibacterial, antileishmanial and in-silico PTP1B inhibitory activities. These results illustrate the utility in using host-derived media for the discovery of new natural products.

Removing phorbol esters from the biomass to add extra value to the byproduct from deoiling seeds of Jatropha curcas in the biodiesel industry

2021 ◽  
Author(s):  
Dayana A. Rodrigues ◽  
Antonio J. Demuner ◽  
Luiz C. A. Barbosa ◽  
Gustavo A. M. Pereira ◽  
José D. Fabris ◽  
...  
Keyword(s):  
Jatropha Curcas ◽  
Phorbol Esters ◽  
Biodiesel Industry

scholarly journals Mineralogical and chemical properties inversed from 21-lunar-day VNIS observations taken during the Chang’E-4 mission

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Qinghong Zeng ◽  
Shengbo Chen ◽  
Yuanzhi Zhang ◽  
Yongling Mu ◽  
Rui Dai ◽  
...  
Keyword(s):  
Impact Crater ◽  
Near Infrared ◽  
Infrared Imaging ◽  
Chemical Properties ◽  
Landing Site ◽  
Radiative Transfer Model ◽  
Transfer Model ◽  
Chemical Compositions ◽  
Impact Melt ◽  
And Chemical Properties

AbstractWe report on the mineralogical and chemical properties of materials investigated by the lunar rover Yutu-2, which landed on the Von Kármán crater in the pre-Nectarian South Pole–Aitken (SPA) basin. Yutu-2 carried several scientific payloads, including the Visible and Near-infrared Imaging Spectrometer (VNIS), which is used for mineral identification, offering insights into lunar evolution. We used 86 valid VNIS data for 21 lunar days, with mineral abundance obtained using the Hapke radiative transfer model and sparse unmixing algorithm and chemical compositions empirically estimated. The mineralogical properties of the materials at the Chang’E-4 (CE-4) site referred to as norite/gabbro, based on findings of mineral abundance, indicate that they may be SPA impact melt components excavated by a surrounding impact crater. We find that CE-4 materials are dominated by plagioclase and pyroxene and feature little olivine, with 50 of 86 observations showing higher LCP than HCP in pyroxene. In view of the effects of space weathering, olivine content may be underestimated, with FeO and TiO2 content estimated using the maturity-corrected method. Estimates of chemical content are 7.42–18.82 wt% FeO and 1.48–2.1 wt% TiO2, with a low-medium Mg number (Mg # ~ 55). Olivine-rich materials are not present at the CE-4 landing site, based on the low-medium Mg #. Multi-origin materials at the CE-4 landing site were analyzed with regard to concentrations of FeO and TiO2 content, supporting our conclusion that the materials at CE-4 do not have a single source but rather are likely a mixture of SPA impact melt components excavated by surrounding impact crater and volcanic product ejecta.

The Extraction of Main Chemical Compositions in Rumex Root

2011 ◽  
Vol 382 ◽  
pp. 372-374
Author(s):  
Yong Jiang ◽  
Zhi Bin Jiang ◽  
Guo Jie Shao ◽  
Dong Cheng Guo ◽  
Yu Tian ◽  
...  
Keyword(s):  
Molecular Structure ◽  
Chemical Properties ◽  
Ethanol Extract ◽  
Chemical Compositions ◽  
Physical And Chemical Properties ◽  
Experimental Basis ◽  
Development And Utilization ◽  
Physical And Chemical ◽  
Root Methods ◽  
And Chemical Properties

Purpose: The purpose of this study was to study the compositions of the polygonaceae medicinal plants called rumex root. Methods: Solvent method and chromatography was used to purificate the chemical compositions of Rumex, and the molecular structure of the compound was identified by physical and chemical properties and spectral data. Results: Two compounds were obtained from the ethanol extract of rumex root, which were identified as Chrysophanol and Physcione. Conclusions: Experimental basis was provided for the further study of the active ingredients of rumex root and the development and utilization of medical resources.

scholarly journals Characteristic Volatile Composition of Seven Seaweeds from the Yellow Sea of China

Marine Drugs ◽  
2021 ◽  
Vol 19 (4) ◽  
pp. 192
Author(s):  
Pengrui Wang ◽  
Jiapeng Chen ◽  
Lujing Chen ◽  
Li Shi ◽  
Hongbing Liu
Keyword(s):  
Yellow Sea ◽  
Solid Phase ◽  
Principal Component ◽  
Chemical Diversity ◽  
The Yellow Sea ◽  
Gas Chromatography Mass Spectrometry ◽  
Network Pharmacology ◽  
Receptor Interaction ◽  
Neuropsychiatric Diseases ◽  
Yellow Sea Of China

Plant volatile organic compounds (VOCs) represent a relatively wide class of secondary metabolites. The VOC profiles of seven seaweeds (Grateloupia filicina, Polysiphonia senticulosa, Callithamnion corymbosum, Sargassum thunbergii, Dictyota dichotoma, Enteromorpha prolifera and Ulva lactuca) from the Yellow Sea of China were investigated using multifiber headspace solid phase microextraction coupled with gas chromatography–mass spectrometry (HS-SPME/GC–MS), among them, the VOCs of three red algae Grateloupia filicina, Polysiphonia senticulosa, and Callithamnion corymbosum were first reported. Principal component analysis (PCA) was used to disclose characteristic categories and molecules of VOCs and network pharmacology was performed to predict potential biomedical utilization of candidate seaweeds. Aldehyde was found to be the most abundant VOC category in the present study and (E)-β-ionone was the only compound found to exist in all seven seaweeds. The chemical diversity of aldehydes in E. prolifera suggest its potential application in chemotaxonomy and hinted that divinylbenzene/carboxen/polydimethylsiloxane (DVB/CAR/PDMS) fiber is more suitable for aldehyde extraction. VOCs in D. dichotoma were characterized as sesquiterpenes and diterpenes and the most relevant pharmacological pathway was the neuroactive ligand–receptor interaction pathway, which suggests that D. dichotoma may have certain preventive and therapeutic values in cancer, especially in lung cancer, in addition to neuropsychiatric diseases.

scholarly journals Hazardous Noxious Substance Detection Based on Ground Experiment and Hyperspectral Remote Sensing

2021 ◽  
Vol 13 (2) ◽  
pp. 318
Author(s):  
Jae-Jin Park ◽  
Kyung-Ae Park ◽  
Pierre-Yves Foucher ◽  
Philippe Deliot ◽  
Stephane Le Floch ◽  
...  
Keyword(s):  
Near Infrared ◽  
Spectral Characteristics ◽  
Chemical Properties ◽  
Principal Component ◽  
Component Analysis ◽  
Noise Removal ◽  
Vertex Component Analysis ◽  
Shortwave Infrared ◽  
Spectral Mixture ◽  
Physical And Chemical

With an increase in the overseas maritime transport of hazardous and noxious substances (HNSs), HNS-related spill accidents are on the rise. Thus, there is a need to completely understand the physical and chemical properties of HNSs. This can be achieved through establishing a library of spectral characteristics with respect to wavelengths from visible and near-infrared (VNIR) bands to shortwave infrared (SWIR) wavelengths. In this study, a ground HNS measurement experiment was conducted for artificially spilled HNS by using two hyperspectral cameras at VNIR and SWIR wavelengths. Representative HNSs such as styrene and toluene were spilled into an outdoor pool and their spectral characteristics were obtained. The relative ratio of HNS to seawater decreased and increased at 550 nm and showed different constant ratios at the SWIR wavelength. Noise removal and dimensional compression procedures were conducted by applying principal component analysis on HNS hyperspectral images. Pure HNS and seawater endmember spectra were extracted using four spectral mixture techniques—N-FINDR, pixel purity index (PPI), independent component analysis (ICA), and vertex component analysis (VCA). The accuracy of detection values of styrene and toluene through the comparison of the abundance fraction were 99.42% and 99.56%, respectively. The results of this study are useful for spectrum-based HNS detection in marine HNS accidents.

scholarly journals Genetic worth of multiple sets of cowpea breeding lines destined for advanced yield testing

Euphytica ◽  
2021 ◽  
Vol 217 (2) ◽  
Author(s):  
Patrick Obia Ongom ◽  
Christian Fatokun ◽  
Abou Togola ◽  
Oluwaseye Gideon Oyebode ◽  
Mansur Sani Ahmad ◽  
...  
Keyword(s):  
Seed Weight ◽  
Genetic Variance ◽  
Principal Component ◽  
Performance Tests ◽  
Genetic Advance ◽  
Breeding Lines ◽  
Lattice Design ◽  
Mean And Variance ◽  
Genotypic Coefficient Of Variation ◽  
Location Interaction

AbstractThe objective of this study was to determine genetic potentials in eight sets of cowpea lines for grain yield (GY), hundred seed weight (HSDWT) and days to 50% flowering (DT50FL). A total of 614 F6 genotypes constituting the sets, grouped by maturity, were evaluated across two locations in Northern Nigeria, in an alpha lattice design, two replications each. Data were recorded on GY, HSDWT and DT50FL.Variance components, genotypic coefficient of variation (GCV), and genetic advance (GA) were used to decode the magnitude of genetic variance within and among sets. Genetic usefulness (Up) which depends on mean and variance to score the genetic merits in historically bi-parental populations was applied to groups of breeding lines with mixed parentage. Principal component analysis (PCA) was used to depict contribution of traits to observed variations. GY and DT50FL explained the variance within and between sets respectively. Genotypes were significantly different, although genotype-by-location and set-by-location interaction effects were also prominent. Genetic variance (δ2G) and GCV were high for GY in Prelim2 (δ2G = 45,897; GCV = 19.58%), HSDWT in Prelim11 (δ2G = 7.137; GCV = 17.07%) and DT50F in Prelim5 (δ2G = 4.54; GCV = 4.4%). Heritability varied among sets for GY (H = 0.21 to 0.57), HSDWT (H = 0.76 to 0.93) and DT50FL (H = 0.20 to 0.81). GA and percentage GA (GAPM) were high for GY in Prelim2 (GAPM = 24.59%; GA = 269.05Kg/ha), HSDWT in Prelim11 (GAPM = 28.54%; GA = 4.47 g), and DT50F in Prelim10 (GAPM = 6.49%; GA = 3.01 days). These sets also registered high values of genetic usefulness, suggesting potential application in non-full sib populations. These approaches can be used during preliminary performance tests to reinforce decisions in extracting promising lines and choose among defined groups of lines.

scholarly journals Global metabolomic and lipidomic analysis reveals the potential mechanisms of hemolysis effect of Ophiopogonin D and Ophiopogonin D' in vivo

2021 ◽  
Vol 16 (1) ◽  
Author(s):  
Huan-Hua Xu ◽  
Zhen-Hong Jiang ◽  
Cong-Shu Huang ◽  
Yu-Ting Sun ◽  
Long-Long Xu ◽  
...  
Keyword(s):  
Chemical Properties ◽  
Principal Component ◽  
Partial Least Square ◽  
Least Square ◽  
Practical Significance ◽  
Plasma Metabolites ◽  
Active Components ◽  
The Difference

Abstract Background OPD and OPD' are the two main active components of Ophiopogon japonicas in Shenmai injection (SMI). Being isomers of each other, they are supposed to have similar pharmacological activities, but the actual situation is complicated. The difference of hemolytic behavior between OPD and OPD' in vivo and in vitro was discovered and reported by our group for the first time. In vitro, only OPD' showed hemolysis reaction, while in vivo, both OPD and OPD' caused hemolysis. In vitro, the primary cause of hemolysis has been confirmed to be related to the difference between physical and chemical properties of OPD and OPD'. In vivo, although there is a possible explanation for this phenomenon, the one is that OPD is bio-transformed into OPD' or its analogues in vivo, the other one is that both OPD and OPD' were metabolized into more activated forms for hemolysis. However, the mechanism of hemolysis in vivo is still unclear, especially the existing literature are still difficult to explain why OPD shows the inconsistent hemolysis behavior in vivo and in vitro. Therefore, the study of hemolysis of OPD and OPD' in vivo is of great practical significance in response to the increase of adverse events of SMI. Methods Aiming at the hemolysis in vivo, this manuscript adopted untargeted metabolomics and lipidomics technology to preliminarily explore the changes of plasma metabolites and lipids of OPD- and OPD'-treated rats. Metabolomics and lipidomics analyses were performed on ultra-high performance liquid chromatography (UPLC) system tandem with different mass spectrometers (MS) and different columns respectively. Multivariate statistical approaches such as principal component analysis (PCA) and orthogonal partial least square-discriminant analysis (OPLS-DA) were applied to screen the differential metabolites and lipids. Results Both OPD and OPD' groups experienced hemolysis, Changes in endogenous differential metabolites and differential lipids, enrichment of differential metabolic pathways, and correlation analysis of differential metabolites and lipids all indicated that the causes of hemolysis by OPD and OPD' were closely related to the interference of phospholipid metabolism. Conclusions This study provided a comprehensive description of metabolomics and lipidomics changes between OPD- and OPD'-treated rats, it would add to the knowledge base of the field, which also provided scientific guidance for the subsequent mechanism research. However, the underlying mechanism require further research.

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