scholarly journals Integrative Taxonomy of Two Peruvian Strains of Brachionus plicatilis Complex with Potential in Aquaculture

Diversity ◽  
2021 ◽  
Vol 13 (12) ◽  
pp. 671
Author(s):  
Pedro Pablo Alonso Sánchez-Dávila ◽  
Giovanna Sotil ◽  
Araceli Adabache-Ortiz ◽  
Deivis Cueva ◽  
Marcelo Silva-Briano
Keyword(s):  
Egg Production ◽  
Brachionus Plicatilis ◽  
Taxonomic Status ◽  
Morphological Characters ◽  
Integrative Taxonomy ◽  
Reproductive Age ◽  
Coi Gene ◽  
Phylogenetic Position ◽  
Mtdna Coi ◽  
The Relationship

Two Peruvian strains of the genus Brachionus were isolated from impacted coastal wetlands. With an integrative taxonomic view, we described their taxonomic status, morphological characters, productive parameters, and phylogenetic position. In the case of both strains, the relationship between biometrics and productive parameters obtained with Principal Components Analysis indicated that the lorica length was associated with longevity, progeny, egg production, and reproductive age, while the lorica width and aperture were associated with the maximum number of eggs carried. Maximum Likelihood and Bayesian Inference analysis carried out with mtDNA COI gene and rDNA ITS1 region showed that both strains were clustered in two clades with distinct phylogenetic positioning from what is currently known for Brachionus plicatilis s.l. One of the strains, Z010-VL, is proposed to be a subspecies of L4 (B. paranguensis), and the other strain, Z018-SD, is proposed as a sub species of SM2 (B. koreanus). In addition, 33 and 31 aquaculture production lineages are proposed, delimited by COI and concatenated COI+ITS1 sequences, respectively. Finally, this study provides new tools that enhance the traceability of the origin of each sub-species throughout the world.

scholarly journals Defining species boundaries in the Merodon avidus complex (Diptera, Syrphidae) using integrative taxonomy, with the description of a new species

2016 ◽  
Author(s):  
Jelena Ačanski ◽  
Ante Vujić ◽  
Mihajla Djan ◽  
Dragana Obreht Vidaković ◽  
Gunilla Ståhls ◽  
...  
Keyword(s):  
Sibling Species ◽  
Morphological Characters ◽  
Integrative Taxonomy ◽  
Coi Gene ◽  
Species Boundaries ◽  
Geometric Morphometric ◽  
Molecular Analyses ◽  
Mtdna Coi ◽  
The Status ◽  
Coi Sequences

Several recent studies have detected and described complexes of cryptic and sibling species in the genus Merodon (Diptera, Syrphidae). One representative of these complexes is the Merodon avidus complex that contains four sibling species, which have proven difficult to distinguish using traditional morphological characters. In the present study, we use two geometric morphometric approaches, as well as molecular characters of the 5’-end of the mtDNA COI gene, to delimit sibling taxa. Analyses based on these data were used to strengthen species boundaries within the complex, and to validate the status of a previously-recognized cryptic taxon from Lesvos Island (Greece), here described as Merodon megavidus Vujić & Radenković sp. nov. Geometric morphometric results of both wing and surstylus shape confirm the present classification for three sibling species－M. avidus (Rossi, 1790), M. moenium Wiedemann in Meigen, 1822 and M. ibericus Vujić, 2015－and, importantly, clearly discriminate the newly-described taxon Merodon megavidus sp. nov. In addition to our geometric morphometric results, supporting characters were obtained from molecular analyses of mtDNA COI sequences, which clearly differentiated M. megavidus sp. nov. from the other members of the M. avidus complex. Molecular analyses revealed that the earliest divergence of M. ibericus occurred around 800 ky BP, while the most recent separation happened between M. avidus and M. moenium around 87 ky BP.

Uncovering Neotropical treefrog diversity: integrative taxonomy reveal paraphyly in Boana atlantica (Amphibia, Anura, Hylidae)

2019 ◽  
Vol 40 (4) ◽  
pp. 511-521
Author(s):  
Luana Rodrigues Lima ◽  
Marcos Jorge Matias Dubeux ◽  
Filipe Augusto Cavalcanti do Nascimento ◽  
Daniel Pacheco Bruschi ◽  
Tamí Mott
Keyword(s):  
Strong Support ◽  
Taxonomic Status ◽  
Nucleolar Organizer ◽  
Morphological Characters ◽  
Integrative Taxonomy ◽  
Morphological Data ◽  
Valid Species ◽  
Nucleolar Organizer Regions ◽  
Candidate Species ◽  
Species Being

Abstract Boana atlantica was described based on morphological characters to acommodate populations from Bahia state, Brazil, previously referred to as B. punctata. However, its taxonomic validity is questionable due to inconsistencies in bioacoustic data. Here, we integrate molecular, cytogenetic and morphological data to re-evaluate the taxonomic status of B. atlantica. Molecular analyses provided strong support for the hypothesis that B. atlantica is a valid species, being, however, nominal populations from Bahia state paraphyletic with respect to individuals of B. atlantica collected in Alagoas and Pernambuco states. These populations shown high genetic divergence in the 16S rRNA mitochondrial fragment, and we consider populations from Alagoas and Pernambuco as a putative new candidate species of Boana punctata group. The external and internal morphology of the tadpoles of these lineages were similar, but Nucleolar Organizer Regions (NOR) was sited in different chromosomes. Our results indicate that B. atlantica is paraphyletic and may be a complex of species. Morphological of adult and/or bioacoustical data should be further assessed to find diagnostic characters to tease these lineages apart and name them properly.

Variability, host range, delimitation and neotypification of Amanita simulans (Amanita section Vaginatae): collections associated with Helianthemum grasslands, and epitypification of A. lividopallescens

Phytotaxa ◽  
2016 ◽  
Vol 280 (1) ◽  
pp. 1 ◽  
Author(s):  
ALFREDO VIZZINI ◽  
MIRCA ZOTTI ◽  
MIDO TRAVERSO ◽  
ENRICO ERCOLE ◽  
PIERRE-ARTHUR MOREAU ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Morphological Variability ◽  
Taxonomic Status ◽  
Morphological Characters ◽  
Molecular Data ◽  
Phylogenetic Position ◽  
Extensive Discussion ◽  
Closely Related Species ◽  
Colour Form ◽  
Morphological And Molecular Data

Several collections of Amanita species from section Vaginatae have been reported to be strictly associated with Helianthemum plants growing in grasslands, a still largely under-explored ectomycorrhizal habitat. The main aim of this study was to investigate the taxonomic status and phylogenetic position of strictly Helianthemum-associated Amanita sect. Vaginatae taxa, informally named Amanita “helianthemicola”. Collections from Italy, England and France were included in this study. The morphologically closely related species complex A. lividopallescens was also examined. Analyses were carried out based on both morphological and molecular data (phylogenetic analysis of the nrITS sequences). All investigated Amanita collections, which are strictly associated with Helianthemum nummularium, turned out to be conspecific with A. simulans. Amanita simulans was recently described from Sardinia (Italy) from Populus nigra habitats based on morphological characters only. As the holotype of A. simulans was lost, a neotype is designated here based on a voucher from the original collecting area. Amanita simulans is re-described, and an extensive discussion on the morphological variability, host species range, distribution and related taxa is provided. Amanita lividopallescens was confirmed as a good species, and re-delimited based on our phylogenetic analysis; moreover, it was epitypified with a recent and well-documented collection from Corse (France). Amanita stenospora is a synonym of A. lividopallescens, being a colour form of the latter without taxonomic value.

scholarly journals Remarks on Mastigodiaptomus (Calanoida: Diaptomidae) from Mexico using integrative taxonomy, with a key of identification and three new species

PeerJ ◽  
2020 ◽  
Vol 8 ◽  
pp. e8416 ◽  
Author(s):  
Martha A. Gutiérrez-Aguirre ◽  
Adrián Cervantes-Martínez ◽  
Manuel Elías-Gutiérrez ◽  
Alfonso Lugo-Vázquez
Keyword(s):  
New Species ◽  
Taxonomic Status ◽  
Integrative Taxonomy ◽  
Coi Gene ◽  
Calanoid Copepods ◽  
Caribbean Islands ◽  
Ephemeral Ponds ◽  
New Findings ◽  
The Caribbean ◽  
Three New Species

Background In Mexico, species of four families of free-living calanoid copepods have been recorded as inhabitants of several freshwater systems. These families are Centropagidae, Temoridae, Pseudodiaptomidae and Diaptomidae. The genera Leptodiaptomus and Mastigodiaptomus are the most speciose diaptomid genera in Mexico, and they inhabit natural and artificial lakes, ephemeral ponds, springs, and caverns. Leptodiaptomus is considered as an endemic Nearctic genus, whereas Mastigodiaptomus is a widely distributed Neotropical genus in the southern USA, Mexico, the Caribbean Islands and Central America. Based on new and recent evidence, Mastigodiaptomus diversity has been underestimated: six species of the genus were known before 2000. In this work three new Mastigodiaptomus species have been described from different regions of Mexico by using integrative taxonomy. We also gave amended diagnosis of M. nesus Bowman (1986) and M. patzcuarensis s. str. (Kiefer, 1938). Methods In this work, the taxonomic status of the species was clarified using modern, integrative method based on the COI gene as a DNA marker, plus micro-structural analysis (based on SEM and ligth microscopy). Results Three new species of Mastigodiaptomus were described based on genetic and morphological analyses: M. alexei sp. n., M. ha sp. n. and M. cihuatlan sp. n. Also amended description of M. nesus, morphological variation of M. patzcuarensis s. str., and a comparison of them with all known sequences within the genus are provided. These new findings show that in Mastigodiaptomus differences in several cuticular microstructures of several appendages (such as the antennules, the fifth legs, or the urosomites of these copepods) agree with the interspecific genetic divergence >3% observed in sequences of the COI gene, and the integration of this information is a powerful tool in species delineation.

scholarly journals Taxonomy confirmation of Puntius cf. binotatus from Gunung Tujuh Lake, Jambi, Indonesia based on Cytochrome Oxidase-I (COI) gene

2018 ◽  
Vol 20 (1) ◽  
pp. 54-60
Author(s):  
DEWI IMELDA ROESMA ◽  
DJONG HON TJONG ◽  
WILA KARLINA ◽  
DYTA RABBANI AIDIL
Keyword(s):  
Cytochrome Oxidase ◽  
Black Spot ◽  
Taxonomic Status ◽  
Molecular Study ◽  
Morphological Characters ◽  
Cytochrome Oxidase I ◽  
Coi Gene ◽  
Phenotypic Characters ◽  
Subspecies Level ◽  
West Sumatra

Roesma D. I, Tjong D. H, Karlina W, Aidil D. R. 2019. Taxonomy confirmation of Puntius cf. binotatus from Gunung Tujuh Lake based on Cytochrome Oxidase-I (COI) gene. Biodiversitas 20: 54-60. The population of Puntius cf. binotatus Gunung Tujuh Lake in considered as an isolated population which found in the 20-30 meters depth under the water Gunung Tujuh Lake, Sumatra Island. The species often exhibit different phenotypic characters and may genetic characters may also different due to their response to habitat/ecological conditions. Previous study on P. binotatus from several locations in West Sumatra showed the complexity of the genetic and morphological characters. A molecular study using COI gene of P. cf. binotatus from Gunung Tujuh Lake in Sumatera has been conducted to determine the taxonomic status of the fish. The distinct morphological characters of Puntius cf. binotatus is one black spot in the middle of the caudal and the absent of black spot on the base of the anterior dorsal ray. The analysis on COI gene showed that the range of sequence divergences between P. cf. binotatus Gunung Tujuh Lake and other Sumatra P. cf. binotatus is 3.1-7.6% and 4.1% to Barbodes banksi. This value represents the differences at the subspecies level of Barbodes banksi. Therefore Barbodes banksi gunungtujuh is proposed as an appropriate name to P. cf. binotatus Gunung Tujuh Lake.

scholarly journals Integrative taxonomy confirms the species status of the Himalayan langurs, Semnopithecus schistaceus Hodgson 1840

2019 ◽  
Author(s):  
Kunal Arekar ◽  
S. Sathyakumar ◽  
K. Praveen Karanth
Keyword(s):  
Taxonomic Status ◽  
Single Species ◽  
Distinct Species ◽  
Morphological Characters ◽  
Integrative Taxonomy ◽  
Multiple Sources ◽  
Species Status ◽  
Species Identity ◽  
Hanuman Langur ◽  
As Species

AbstractTaxonomy is replete with groups where the species identity and classification remain unresolved. One such group is the widely distributed Hanuman langur (Colobinae: Semnopithecus). For most part of the last century, Hanuman langur was considered to be a single species with multiple subspecies. Nevertheless, recent studies using an integrative taxonomy approach suggested that this taxon is a complex, with at least three species. However, these studies did not include the Himalayan population of the Hanuman langur whose taxonomic status remains unresolved. The Himalayan population of Hanuman langurs have been classified as a distinct species with multiple subspecies or have been subsumed into other species. These classification schemes are wholly based on morphological characters and which are sometimes insufficient to delimit different species. Here, we have integrated data from multiple sources viz. morphology, DNA, and ecology to resolve the taxonomy of the Himalayan langur and to understand its distribution limit. Our results with three lines of evidence corresponding to three different species concepts show that Himalayan langur is a distinct species from S. entellus of the plains. Additionally, these results did not show any support for splitting of the Himalayan langur into multiple subspecies. Our study supports the classification proposed by Hill (1939) and we recommend Semnopithecus schistaceus, Hodgson 1840 as species name for the Himalayan langur and subsume all the known subspecies into it.

scholarly journals New insight into the taxonomic resolution of the genus Bythotrephes Leydig (Crustacea: Cladocera) based on molecular data from Central Europe

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Maciej Karpowicz ◽  
Magdalena Świsłocka ◽  
Joanna Moroz ◽  
Łukasz Sługocki
Keyword(s):  
Genetic Analysis ◽  
Central Europe ◽  
Taxonomic Status ◽  
Molecular Data ◽  
Coi Gene ◽  
Taxonomic Resolution ◽  
Monotypic Genus ◽  
Mtdna Coi ◽  
Xix Century ◽  
Insight Into

AbstractThe taxonomic status of the genus Bythotrephes Leydig (Crustacea: Cladocera) has been debated since the second half of the XIX century. The most widespread view of recent decades has been that Bythotrephes is a monotypic genus, which was support by preliminary molecular data. However, the recent detailed morphological revision of this genus clearly distinguishes at least seven species. Therefore, we performed a multi-lake survey in Central Europe to give new insight into the taxonomic status of Bythotrephes by combining genetic analysis with traditional morphology-based taxonomy. Based on the morphology we identified two species in Central Europe, B. brevimanus and B. lilljeborgi, as well as hybrid forms. For the genetic analysis, we used newly obtained 113 sequences of mtDNA COI gene of the 535-bp length Bythotrephes from Central Europe and sequences downloaded from GenBank. There were no significant differences between all analyzed sequences, which supports the hypothesis that Bythotrephes is a monotypic genus, with only one highly polymorphic species. On the other hand, the results of our work could point out that the COI gene is insufficient to evaluate the taxonomic status of Bythotrephes. Nonetheless, we have identified 29 new haplotypes of mtDNA COI, and one which was the same as the haplotype found in North America and Finland. Furthermore, this haplotype was the source variant from which most other haplotypes were derived.

scholarly journals Toward a Natural Classification of Botryosphaeriaceae: A Study of the Type Specimens of Botryosphaeria sensu lato

2021 ◽  
Vol 12 ◽  
Author(s):  
Ying Zhang ◽  
Yupei Zhou ◽  
Wei Sun ◽  
Lili Zhao ◽  
D. Pavlic-Zupanc ◽  
...  
Keyword(s):  
Dna Sequence ◽  
Dna Sequences ◽  
Sequence Data ◽  
Morphological Characteristics ◽  
Taxonomic Status ◽  
Morphological Characters ◽  
Phylogenetic Position ◽  
Type Specimens ◽  
Natural Classification ◽  
Dna Sequence Data

The genus Botryosphaeria includes more than 200 epithets, but only the type species, Botryosphaeria dothidea and a dozen or more other species have been identified based on DNA sequence data. The taxonomic status of the other species remains unconfirmed because they lack either morphological information or DNA sequence data. In this study, types or authentic specimens of 16 “Botryosphaeria” species are reassessed to clarify their identity and phylogenetic position. nuDNA sequences of four regions, ITS, LSU, tef1-α and tub2, are analyzed and considered in combination with morphological characteristics. Based on the multigene phylogeny and morphological characters, Botryosphaeria cruenta and Botryosphaeria hamamelidis are transferred to Neofusicoccum. The generic status of Botryosphaeria aterrima and Botryosphaeria mirabile is confirmed in Botryosphaeria. Botryosphaeria berengeriana var. weigeliae and B. berengeriana var. acerina are treated synonyms of B. dothidea. Botryosphaeria mucosa is transferred to Neodeightonia as Neodeightonia mucosa, and Botryosphaeria ferruginea to Nothophoma as Nothophoma ferruginea. Botryosphaeria foliicola is reduced to synonymy with Phyllachorella micheliae. Botryosphaeria abuensis, Botryosphaeria aesculi, Botryosphaeria dasylirii, and Botryosphaeria wisteriae are tentatively kept in Botryosphaeria sensu stricto until further phylogenetic analysis is carried out on verified specimens. The ordinal status of Botryosphaeria apocyni, Botryosphaeria gaubae, and Botryosphaeria smilacinina cannot be determined, and tentatively accommodate these species in Dothideomycetes incertae sedis. The study demonstrates the significance of a polyphasic approach in characterizing type specimens, including the importance of using of DNA sequence data.

scholarly journals Ultrastructure characters and partial mtDNA-COI haplotypes of Asian corn borer, Ostrinia furnacalis (Guenée) (Lepidoptera: Crambidae) from Indonesia

2020 ◽  
Vol 21 (7) ◽  
Author(s):  
Ahmad Taufiq Arminudin ◽  
Suputa ◽  
Arman Wijonarko ◽  
Y. Andi Trisyono
Keyword(s):  
The Philippines ◽  
Coi Gene ◽  
Ostrinia Furnacalis ◽  
High Similarity ◽  
Microscopy Observation ◽  
Corn Borer ◽  
Mtdna Coi ◽  
Asian Corn Borer ◽  
Relationship Of ◽  
The Relationship

Abstract. Arminudin AT, Suputa, Wijonarko A, Trisyono YA. 2020. Ultrastructure characters and partial mtDNA-COI haplotypes of Asian corn borer, Ostrinia furnacalis (Guenée) (Lepidoptera: Crambidae) from Indonesia. Biodiversitas 21: 2914-2922. In addition to the confirmation of the species of corn borer, we analyzed the relationship of Ostrinia furnacalis in Indonesia with that in other countries. Moths of O. furnacalis were collected from several areas in Java and Sumatra islands of Indonesia. Forewing and labial palpi scales were investigated under Scanning Electron Microscopy observation. A 658 bp of O. furnacalis partial COI gene sequences of 1480-2138 nucleotides were downloaded from GenBank and BOLD system databases. The ridge lamellae and window characters as unique ultrastructure characters of scale were further supported by the COI gene analysis. High similarity was observed between the Java and the Philippines specimens, but they were a different haplotype compared with Sumatra’s specimen. The results could provide the baseline data on the genetic variation of O. furnacalis in Indonesia.

scholarly journals A new species of sinistral flatfish of the genus Chascanopsetta (Teleostei: Bothidae) from off Papua New Guinea, western Pacific Ocean

Zootaxa ◽  
2018 ◽  
Vol 4476 (1) ◽  
pp. 168
Author(s):  
PAKORN TONGBOONKUA ◽  
MAO-YING LEE ◽  
WEI-JEN CHEN
Keyword(s):  
New Species ◽  
Papua New Guinea ◽  
Dna Sequences ◽  
Taxonomic Status ◽  
New Guinea ◽  
Coi Gene ◽  
Phylogenetic Position ◽  
Nominal Species ◽  
The West ◽  
West Pacific

Left-eyed flounders of the genus Chascanopsetta Alcock 1894 (Bothidae) occur in the Indian, Pacific, and Atlantic oceans at depths ranging from 120 to 1500 meters. They possess some unique features in bothid fishes including a strongly compressed and elongated body and a tremendously large mouth. Currently, nine species of Chascanopsetta are recognized, and three of them (C. micrognatha Amaoka & Yamamoto 1984, C. lugubris Alcock 1894 and C. prognatha Norman 1939) are distributed in the West Pacific. We collected 25 specimens of Chascanopsetta during 11 biodiversity expeditions carried out mainly in the West Pacific. Among them, eight specimens taken off Papua New Guinea present morphological features that differ from those of the three nominal species known in the West Pacific. In this study, we examined these eight specimens of unknown affinity and compared their morphology to that of specimens of other congeneric species. Results of these comparisons showed that these specimens represent an undescribed species of Chascanopsetta, named herein, C. novaeguineae sp. nov.. The new species resembles C. elski Foroshchuk 1991, which is known only from the Saya de Malha Bank in the western Indian Ocean, in having a high number of gill rakers (> 13). However, the combination of the following characters further distinguishes C. novaeguineae sp. nov. from C. elski: longer jaws, narrower interorbital width, and number of pseudobranches (21–25 vs. 26–27). The DNA sequences from the mitochondrial cytochrome oxidase subunit I (COI) gene from C. novaeguineae sp. nov. and other species were obtained and compared to confirm its taxonomic status and to infer its tentative phylogenetic position within the Chascanopsetta.

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